Wall clock time and date at job start Mon Mar 30 2020 05:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47121 * 2 1 4 4 C 1.52993 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47176 * 304.99869 * 4 3 2 6 6 C 1.53004 * 109.47244 * 184.99805 * 4 3 2 7 7 C 1.50700 * 109.46725 * 65.00008 * 6 4 3 8 8 O 1.21295 * 120.00181 * 0.02562 * 7 6 4 9 9 N 1.34771 * 119.99721 * 179.97438 * 7 6 4 10 10 C 1.46498 * 120.00388 * 0.02562 * 9 7 6 11 11 C 1.37100 * 120.00143 * 180.02562 * 9 7 6 12 12 H 1.08006 * 119.99757 * 24.39637 * 11 9 7 13 13 C 1.38948 * 120.00213 * 204.39681 * 11 9 7 14 14 N 1.31409 * 120.00017 * 12.64397 * 13 11 9 15 15 Si 1.86803 * 120.00045 * 192.63970 * 13 11 9 16 16 H 1.48499 * 109.46945 * 60.00128 * 15 13 11 17 17 H 1.48505 * 109.47227 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47094 * 299.99965 * 15 13 11 19 19 N 1.46499 * 109.47259 * 64.99979 * 4 3 2 20 20 C 1.36878 * 126.39919 * 240.00503 * 19 4 3 21 21 C 1.34674 * 106.81980 * 179.73625 * 20 19 4 22 22 N 1.34126 * 108.01794 * 359.97438 * 21 20 19 23 23 C 1.30496 * 109.25725 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.46926 * 59.99908 * 1 2 3 25 25 H 1.08998 * 109.46869 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46877 * 300.00020 * 1 2 3 27 27 H 1.09000 * 109.46734 * 240.00335 * 2 1 3 28 28 H 1.08997 * 109.46926 * 120.00092 * 2 1 3 29 29 H 1.09000 * 109.47110 * 59.99562 * 3 2 1 30 30 H 1.09002 * 109.47174 * 300.00575 * 3 2 1 31 31 H 1.08996 * 109.46827 * 184.99741 * 6 4 3 32 32 H 1.08993 * 109.47117 * 305.00254 * 6 4 3 33 33 H 1.09001 * 109.47617 * 85.85849 * 10 9 7 34 34 H 1.08999 * 109.47229 * 205.86487 * 10 9 7 35 35 H 1.09008 * 109.46737 * 325.85651 * 10 9 7 36 36 H 0.96999 * 120.00293 * 180.02562 * 14 13 11 37 37 H 1.08001 * 126.59410 * 359.76370 * 20 19 4 38 38 H 1.08003 * 125.99169 * 180.02562 * 21 20 19 39 39 H 1.08008 * 125.64973 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8533 0.8427 6 6 4.0799 2.8796 0.1263 7 6 3.6806 3.4387 1.4676 8 8 3.0506 2.7549 2.2465 9 7 4.0245 4.6982 1.8020 10 6 4.7859 5.5240 0.8615 11 6 3.6617 5.2068 3.0224 12 1 3.4678 4.5397 3.8494 13 6 3.5435 6.5804 3.1954 14 7 3.5325 7.3758 2.1494 15 14 3.4001 7.2963 4.9148 16 1 4.6071 6.9381 5.7023 17 1 3.2860 8.7744 4.8276 18 1 2.1927 6.7456 5.5812 19 7 4.0589 0.8587 -1.2508 20 6 4.8490 -0.2522 -1.3747 21 6 5.0550 -0.4389 -2.6924 22 7 4.4078 0.5312 -3.3551 23 6 3.8082 1.3115 -2.4981 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 1.9564 -0.8899 31 1 5.1663 2.8887 0.0377 32 1 3.6456 3.4898 -0.6655 33 1 4.0995 6.0194 0.1747 34 1 5.3526 6.2741 1.4129 35 1 5.4722 4.8927 0.2969 36 1 3.4504 8.3347 2.2701 37 1 5.2331 -0.8620 -0.5704 38 1 5.6383 -1.2313 -3.1376 39 1 3.2109 2.1768 -2.7454 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701319458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:26 Heat of formation + Delta-G solvation = 6.588222 kcal Electronic energy + Delta-G solvation = -20516.364206 eV Core-core repulsion = 17459.550442 eV Total energy + Delta-G solvation = -3056.813763 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.01537 -40.54951 -37.64941 -36.43604 -34.22190 -33.63663 -31.64192 -30.12121 -28.66940 -27.83987 -26.21712 -24.28267 -22.68528 -22.06298 -21.38285 -20.33307 -18.91235 -18.50993 -17.36831 -16.62816 -16.52526 -16.24747 -16.07900 -15.51900 -15.15543 -14.82116 -14.57562 -14.34756 -14.18943 -13.88904 -13.82194 -13.48904 -13.25456 -13.13320 -12.77520 -12.65895 -12.56685 -12.36284 -12.15414 -12.00264 -11.78032 -11.59925 -10.99624 -10.88280 -10.52442 -10.30194 -9.66987 -9.36713 -8.35059 -5.99874 1.22759 1.38720 1.41795 1.51293 1.81598 2.00318 2.28674 2.29875 3.07825 3.08757 3.44972 3.77694 3.89679 3.93038 4.04754 4.08842 4.20432 4.34988 4.38269 4.56177 4.58258 4.67559 4.72083 4.82022 4.88035 4.89514 4.99512 5.00647 5.17720 5.30799 5.34778 5.40221 5.44760 5.50407 5.91115 6.09139 6.32202 6.45728 7.15350 7.20917 7.45722 8.00169 8.67844 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025348 B = 0.004976 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.348720 B = 5625.369611 C = 6287.323488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.127 4.127 4 C 0.167 3.833 5 H 0.099 0.901 6 C -0.126 4.126 7 C 0.446 3.554 8 O -0.617 6.617 9 N -0.461 5.461 10 C 0.119 3.881 11 C -0.343 4.343 12 H 0.074 0.926 13 C -0.001 4.001 14 N -0.896 5.896 15 Si 0.986 3.014 16 H -0.268 1.268 17 H -0.273 1.273 18 H -0.276 1.276 19 N -0.444 5.444 20 C -0.055 4.055 21 C -0.050 4.050 22 N -0.530 5.530 23 C 0.175 3.825 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.273 0.727 37 H 0.192 0.808 38 H 0.185 0.815 39 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.145 -9.734 -6.433 11.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.165 4.165 4 C 0.064 3.936 5 H 0.117 0.883 6 C -0.167 4.167 7 C 0.235 3.765 8 O -0.505 6.505 9 N -0.179 5.179 10 C -0.024 4.024 11 C -0.471 4.471 12 H 0.092 0.908 13 C -0.203 4.203 14 N -0.535 5.535 15 Si 0.810 3.190 16 H -0.193 1.193 17 H -0.197 1.197 18 H -0.202 1.202 19 N -0.125 5.125 20 C -0.188 4.188 21 C -0.198 4.198 22 N -0.249 5.249 23 C -0.107 4.107 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.209 0.791 38 H 0.202 0.798 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 0.782 -9.660 -6.820 11.850 hybrid contribution -0.049 0.680 1.709 1.840 sum 0.733 -8.980 -5.111 10.359 Atomic orbital electron populations 1.21720 0.94938 1.02138 1.01724 1.21386 0.96767 0.95376 1.01369 1.22032 0.92290 0.98690 1.03492 1.21005 0.95619 0.93279 0.83731 0.88327 1.21749 1.03134 0.95880 0.95913 1.20499 0.83234 0.83355 0.89419 1.90482 1.45510 1.60134 1.54353 1.43796 1.46879 1.11712 1.15531 1.21437 0.94659 0.94133 0.92149 1.19563 1.47567 0.91357 0.88582 0.90769 1.26047 0.95503 0.96188 1.02526 1.70044 1.47886 1.04975 1.30571 0.85107 0.78932 0.77176 0.77822 1.19270 1.19742 1.20154 1.45761 1.37266 1.22022 1.07487 1.23163 1.01849 0.93485 1.00340 1.22638 1.05329 1.01161 0.90644 1.70280 1.13710 1.06869 1.34001 1.25175 1.03829 1.02289 0.79413 0.92425 0.91570 0.93396 0.92364 0.92450 0.90354 0.91130 0.88395 0.88035 0.93674 0.92517 0.91820 0.91733 0.79062 0.79777 0.76965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.91 71.98 0.71 -2.67 16 2 C -0.11 -2.80 5.82 30.60 0.18 -2.62 16 3 C -0.13 -3.67 4.46 30.59 0.14 -3.54 16 4 C 0.17 4.72 2.09 44.99 0.09 4.81 16 5 H 0.10 2.97 7.90 -2.39 -0.02 2.95 16 6 C -0.13 -3.99 3.79 29.85 0.11 -3.88 16 7 C 0.45 19.70 7.31 87.66 0.64 20.34 16 8 O -0.62 -30.97 13.70 -3.08 -0.04 -31.02 16 9 N -0.46 -22.42 3.01 -658.88 -1.98 -24.40 16 10 C 0.12 5.01 8.44 127.77 1.08 6.08 16 11 C -0.34 -18.64 9.24 84.04 0.78 -17.87 16 12 H 0.07 4.29 7.45 -2.91 -0.02 4.27 16 13 C 0.00 -0.03 5.04 84.93 0.43 0.40 16 14 N -0.90 -46.26 10.83 21.66 0.23 -46.03 16 15 Si 0.99 41.24 29.57 68.60 2.03 43.27 16 16 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 17 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 18 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 19 N -0.44 -11.20 2.07 -506.54 -1.05 -12.25 16 20 C -0.06 -1.27 11.54 83.09 0.96 -0.31 16 21 C -0.05 -1.24 11.87 83.52 0.99 -0.25 16 22 N -0.53 -15.28 11.25 -200.30 -2.25 -17.53 16 23 C 0.18 4.56 11.55 180.26 2.08 6.64 16 24 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 1.44 7.75 -2.39 -0.02 1.42 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 2.87 5.88 -2.39 -0.01 2.85 16 30 H 0.07 1.87 7.79 -2.39 -0.02 1.86 16 31 H 0.10 2.86 7.41 -2.39 -0.02 2.84 16 32 H 0.10 2.95 8.05 -2.39 -0.02 2.93 16 33 H 0.04 1.94 7.83 -2.39 -0.02 1.92 16 34 H 0.06 2.57 6.80 -2.39 -0.02 2.55 16 35 H 0.06 2.13 6.61 -2.38 -0.02 2.11 16 36 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16 37 H 0.19 3.36 8.06 -2.91 -0.02 3.34 16 38 H 0.19 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.21 4.58 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -63.50 321.34 6.15 -57.35 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 1.02 Total: 23.46 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 8.19 Total: 7.15 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -5.05 Total: -100.21 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.04 Total: -31.02 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -63.50 6.15 -57.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701319458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.942 kcal (2) G-P(sol) polarization free energy of solvation -63.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds