Wall clock time and date at job start Mon Mar 30 2020 04:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47371 * 2 1 4 4 C 1.52991 * 109.47523 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47272 * 60.00137 * 4 3 2 6 6 N 1.46495 * 109.47159 * 59.99617 * 5 4 3 7 7 C 1.34779 * 119.99988 * 155.00041 * 6 5 4 8 8 O 1.21580 * 120.00112 * 359.73349 * 7 6 5 9 9 N 1.34776 * 120.00192 * 180.02562 * 7 6 5 10 10 C 1.37188 * 120.00265 * 179.72596 * 9 7 6 11 11 H 1.08002 * 120.00181 * 20.29462 * 10 9 7 12 12 C 1.38878 * 120.00330 * 200.28575 * 10 9 7 13 13 N 1.31478 * 119.99506 * 21.37917 * 12 10 9 14 14 Si 1.86797 * 120.00251 * 201.37554 * 12 10 9 15 15 H 1.48506 * 109.46784 * 90.00534 * 14 12 10 16 16 H 1.48502 * 109.47179 * 210.00059 * 14 12 10 17 17 H 1.48493 * 109.47235 * 330.00570 * 14 12 10 18 18 C 1.46501 * 119.99908 * 359.72614 * 9 7 6 19 19 C 1.47202 * 109.47266 * 83.86206 * 18 9 7 20 20 N 6.55370 * 104.31823 * 323.83640 * 2 1 3 21 21 C 1.53008 * 109.46575 * 300.00064 * 5 4 3 22 22 C 1.52997 * 109.47228 * 60.00289 * 21 5 4 23 23 H 1.09006 * 109.47081 * 60.00459 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47341 * 299.99953 * 1 2 3 26 26 H 1.09006 * 109.47103 * 120.00329 * 2 1 3 27 27 H 1.09006 * 109.46773 * 59.99592 * 3 2 1 28 28 H 1.09006 * 109.47276 * 300.00223 * 3 2 1 29 29 H 1.09004 * 109.47596 * 300.00108 * 4 3 2 30 30 H 1.08999 * 109.47358 * 179.97438 * 4 3 2 31 31 H 1.08994 * 109.47374 * 180.02562 * 5 4 3 32 32 H 0.97006 * 120.00393 * 335.00838 * 6 5 4 33 33 H 0.97002 * 119.99786 * 179.97438 * 13 12 10 34 34 H 1.09004 * 109.47435 * 203.85978 * 18 9 7 35 35 H 1.09005 * 109.47293 * 323.86224 * 18 9 7 36 36 H 1.09006 * 109.46614 * 179.97438 * 21 5 4 37 37 H 1.08995 * 109.47164 * 299.99400 * 21 5 4 38 38 H 1.08999 * 109.47213 * 179.97438 * 22 21 5 39 39 H 1.08997 * 109.47425 * 59.99082 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0805 0.7211 -1.2483 6 7 3.5926 1.4114 -2.4447 7 6 4.2700 1.3085 -3.6054 8 8 5.2885 0.6468 -3.6583 9 7 3.8214 1.9441 -4.7060 10 6 4.5139 1.8439 -5.8861 11 1 5.2050 1.0282 -6.0392 12 6 4.3261 2.7914 -6.8840 13 7 3.8429 3.9764 -6.5828 14 14 4.7602 2.3821 -8.6542 15 1 3.5755 1.7966 -9.3316 16 1 5.1731 3.6207 -9.3617 17 1 5.8769 1.4036 -8.6764 18 6 2.5943 2.7419 -4.6423 19 6 2.9099 4.0879 -4.1367 20 7 3.1508 5.1267 -3.7472 21 6 3.5705 -0.7215 -1.2482 22 6 2.0405 -0.7215 -1.2490 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 3.9330 0.9288 0.8909 30 1 3.9333 2.4701 0.0002 31 1 5.1705 0.7207 -1.2476 32 1 2.7822 1.9427 -2.4016 33 1 3.7120 4.6383 -7.2797 34 1 2.1600 2.8208 -5.6389 35 1 1.8820 2.2600 -3.9725 36 1 3.9339 -1.2353 -2.1383 37 1 3.9335 -1.2352 -0.3581 38 1 1.6772 -1.7491 -1.2494 39 1 1.6776 -0.2077 -2.1391 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705706018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:50 Heat of formation + Delta-G solvation = -26.675451 kcal Electronic energy + Delta-G solvation = -21046.966605 eV Core-core repulsion = 17988.710420 eV Total energy + Delta-G solvation = -3058.256184 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.33275 -39.48910 -37.58407 -36.16975 -35.07499 -33.67231 -31.65139 -31.62009 -29.15726 -27.23104 -26.20656 -23.50557 -22.39728 -21.70608 -19.95145 -19.61385 -19.32312 -18.03880 -16.85361 -16.47895 -16.25442 -15.75563 -15.49054 -15.06842 -14.93637 -14.72014 -14.58878 -14.16205 -13.80963 -13.69363 -13.42061 -13.14482 -13.09898 -12.85304 -12.76878 -12.35661 -12.31755 -12.26347 -12.14074 -12.08257 -11.97661 -11.30366 -11.08528 -11.02163 -10.86790 -10.82665 -9.97932 -9.66242 -8.32162 -5.88119 1.46448 1.49491 1.59632 1.83946 2.20728 2.34975 2.43526 2.62130 3.08639 3.50125 3.67443 3.84176 3.90576 3.91795 4.25722 4.35272 4.48865 4.55564 4.59493 4.67386 4.75481 4.80782 4.83318 4.96643 5.09420 5.15460 5.18805 5.25138 5.30147 5.39017 5.48879 5.54899 5.55317 5.67712 5.79344 5.90547 6.38053 6.88653 7.01152 7.22679 7.59338 8.15438 8.74146 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025552 B = 0.005898 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.526235 B = 4746.564247 C = 5108.772905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.113 4.113 4 C -0.119 4.119 5 C 0.160 3.840 6 N -0.734 5.734 7 C 0.667 3.333 8 O -0.652 6.652 9 N -0.482 5.482 10 C -0.320 4.320 11 H 0.079 0.921 12 C -0.002 4.002 13 N -0.903 5.903 14 Si 0.989 3.011 15 H -0.260 1.260 16 H -0.289 1.289 17 H -0.278 1.278 18 C 0.230 3.770 19 C 0.254 3.746 20 N -0.504 5.504 21 C -0.124 4.124 22 C -0.107 4.107 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.396 0.604 33 H 0.270 0.730 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.036 0.964 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.237 -7.615 11.572 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 C -0.151 4.151 4 C -0.157 4.157 5 C 0.055 3.945 6 N -0.392 5.392 7 C 0.369 3.631 8 O -0.536 6.536 9 N -0.207 5.207 10 C -0.448 4.448 11 H 0.097 0.903 12 C -0.203 4.203 13 N -0.543 5.543 14 Si 0.814 3.186 15 H -0.185 1.185 16 H -0.215 1.215 17 H -0.203 1.203 18 C 0.102 3.898 19 C -0.064 4.064 20 N -0.185 5.185 21 C -0.162 4.162 22 C -0.145 4.145 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.233 0.767 33 H 0.080 0.920 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.054 0.946 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.201 -6.393 11.995 16.414 hybrid contribution 0.366 0.101 -1.447 1.496 sum -8.835 -6.292 10.549 15.130 Atomic orbital electron populations 1.21813 0.94413 1.02031 1.02014 1.21109 0.95970 0.95234 0.98010 1.21604 0.94021 0.97170 1.02280 1.21783 0.97126 1.00275 0.96474 1.20789 0.97651 0.92248 0.83807 1.45197 1.30145 1.55739 1.08157 1.16315 0.83020 0.82874 0.80848 1.90709 1.28177 1.49722 1.84984 1.42918 1.23472 1.46351 1.07923 1.19451 1.25161 1.10169 0.90059 0.90303 1.25847 0.97658 0.93306 1.03474 1.69959 1.46736 1.03322 1.34293 0.84987 0.78811 0.77090 0.77745 1.18520 1.21530 1.20347 1.18823 0.87462 0.79904 1.03568 1.29836 0.91760 0.95300 0.89521 1.80842 1.09290 1.13522 1.14828 1.21855 0.97157 0.95659 1.01563 1.21516 0.93956 1.00725 0.98291 0.93008 0.92274 0.91894 0.90106 0.90100 0.92910 0.88506 0.92493 0.93069 0.76683 0.92035 0.85924 0.85853 0.94552 0.89692 0.91363 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.19 71.98 0.66 -1.41 16 2 C -0.08 -1.41 2.72 -10.79 -0.03 -1.44 16 3 C -0.11 -2.07 5.03 30.59 0.15 -1.92 16 4 C -0.12 -2.61 5.61 30.59 0.17 -2.44 16 5 C 0.16 4.83 2.79 45.00 0.13 4.96 16 6 N -0.73 -25.90 4.10 -457.82 -1.88 -27.77 16 7 C 0.67 31.33 8.13 179.05 1.46 32.78 16 8 O -0.65 -36.20 15.68 -3.97 -0.06 -36.26 16 9 N -0.48 -22.99 2.60 -662.33 -1.72 -24.71 16 10 C -0.32 -17.12 9.27 84.01 0.78 -16.34 16 11 H 0.08 4.56 7.43 -2.91 -0.02 4.54 16 12 C 0.00 -0.12 4.84 84.90 0.41 0.30 16 13 N -0.90 -46.59 9.59 21.65 0.21 -46.39 16 14 Si 0.99 41.30 29.60 68.60 2.03 43.33 16 15 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 16 H -0.29 -12.12 7.11 99.48 0.71 -11.42 16 17 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 18 C 0.23 8.98 4.81 84.57 0.41 9.39 16 19 C 0.25 11.15 13.32 89.45 1.19 12.34 16 20 N -0.50 -23.99 18.53 20.00 0.37 -23.62 16 21 C -0.12 -3.25 5.60 30.60 0.17 -3.08 16 22 C -0.11 -2.28 5.05 30.60 0.15 -2.13 16 23 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.05 1.06 6.51 -2.38 -0.02 1.04 16 29 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.86 7.57 -2.39 -0.02 1.84 16 32 H 0.40 12.15 4.59 -92.70 -0.43 11.73 16 33 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 34 H 0.12 4.92 6.63 -2.38 -0.02 4.90 16 35 H 0.12 3.53 6.71 -2.38 -0.02 3.51 16 36 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.05 1.24 7.60 -2.39 -0.02 1.22 16 Total: -1.00 -68.16 314.54 5.23 -62.93 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.63 Total: 21.47 kcal Atomic # 6 Polarization: 25.35 SS G_CDS: 5.65 Total: 31.01 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -3.02 Total: -122.49 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -0.06 Total: -36.26 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -68.16 5.23 -62.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705706018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.259 kcal (2) G-P(sol) polarization free energy of solvation -68.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds