Wall clock time and date at job start Mon Mar 30 2020 04:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 112.93391 * 2 1 4 4 C 1.53935 * 113.73294 * 228.29275 * 2 1 3 5 5 N 1.47969 * 86.17541 * 221.92164 * 4 2 1 6 6 C 1.47955 * 90.76221 * 24.68999 * 5 4 2 7 7 H 1.09000 * 113.85975 * 89.64630 * 6 5 4 8 8 C 1.50700 * 113.75527 * 220.99061 * 6 5 4 9 9 O 1.21285 * 120.00345 * 7.10704 * 8 6 5 10 10 N 1.34783 * 120.00067 * 186.83089 * 8 6 5 11 11 C 1.46494 * 120.00268 * 184.99867 * 10 8 6 12 12 C 1.50704 * 109.46940 * 90.00062 * 11 10 8 13 13 H 1.08005 * 119.99924 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00171 * 179.97438 * 12 11 10 15 15 N 1.31508 * 119.99820 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00010 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47296 * 59.99804 * 16 14 12 18 18 H 1.48496 * 109.47146 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47066 * 300.00057 * 16 14 12 20 20 C 1.46502 * 119.99737 * 5.00629 * 10 8 6 21 21 C 1.52992 * 109.47133 * 86.56240 * 20 10 8 22 22 C 1.47210 * 109.47128 * 180.02562 * 21 20 10 23 23 N 5.98324 * 56.32260 * 122.70652 * 2 1 3 24 24 H 1.09002 * 109.46989 * 294.99033 * 1 2 3 25 25 H 1.09004 * 109.46793 * 54.99230 * 1 2 3 26 26 H 1.09003 * 109.46900 * 174.98885 * 1 2 3 27 27 H 1.09003 * 109.46322 * 191.56821 * 3 2 1 28 28 H 1.09001 * 109.47133 * 311.56138 * 3 2 1 29 29 H 1.08998 * 109.47319 * 71.56765 * 3 2 1 30 30 H 1.09001 * 113.75837 * 336.23485 * 4 2 1 31 31 H 1.08993 * 113.76022 * 107.60325 * 4 2 1 32 32 H 1.00898 * 110.99465 * 271.79310 * 5 4 2 33 33 H 1.08990 * 109.47384 * 210.00248 * 11 10 8 34 34 H 1.08997 * 109.47480 * 330.00871 * 11 10 8 35 35 H 0.97003 * 120.00057 * 179.97438 * 15 14 12 36 36 H 1.08996 * 109.47083 * 206.56337 * 20 10 8 37 37 H 1.08996 * 109.47075 * 326.55987 * 20 10 8 38 38 H 1.09007 * 109.47614 * 299.99702 * 21 20 10 39 39 H 1.09000 * 109.47544 * 60.00378 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1263 1.4091 0.0000 4 6 2.1496 -0.9376 -1.0520 5 7 3.1155 -1.3197 0.0018 6 6 2.1496 -0.9349 1.0543 7 1 1.4898 -1.7451 1.3649 8 6 2.7758 -0.2086 2.2168 9 8 3.9417 0.1221 2.1684 10 7 2.0387 0.0785 3.3082 11 6 2.6148 0.8792 4.3913 12 6 2.3445 2.3395 4.1349 13 1 1.7979 2.6408 3.2534 14 6 2.7940 3.2907 5.0260 15 7 3.4591 2.9237 6.0995 16 14 2.4584 5.1006 4.7085 17 1 0.9923 5.3292 4.6490 18 1 3.0423 5.9124 5.8063 19 1 3.0742 5.4992 3.4172 20 6 0.6616 -0.4104 3.4113 21 6 0.6640 -1.8200 4.0061 22 6 -0.7198 -2.3115 4.1091 23 7 -1.7877 -2.6904 4.1897 24 1 -0.3633 0.4342 0.9315 25 1 -0.3633 0.5896 -0.8418 26 1 -0.3633 -1.0238 -0.0898 27 1 3.1951 1.3512 -0.2061 28 1 1.6400 2.0094 -0.7689 29 1 1.9686 1.8703 0.9749 30 1 1.4905 -1.7496 -1.3590 31 1 2.6025 -0.4144 -1.8941 32 1 3.9142 -0.7031 0.0009 33 1 2.1628 0.5870 5.3391 34 1 3.6908 0.7112 4.4347 35 1 3.7758 3.5929 6.7263 36 1 0.0871 0.2549 4.0558 37 1 0.2096 -0.4352 2.4197 38 1 1.2384 -2.4855 3.3616 39 1 1.1159 -1.7952 4.9977 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710044490.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:53 Heat of formation + Delta-G solvation = 19.852124 kcal Electronic energy + Delta-G solvation = -21011.355261 eV Core-core repulsion = 17955.116663 eV Total energy + Delta-G solvation = -3056.238597 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.91097 -38.13679 -36.83242 -35.29609 -32.92558 -31.55230 -30.88057 -28.28284 -27.46189 -26.21342 -24.16475 -23.72274 -22.62809 -19.48030 -18.19759 -17.60615 -16.84787 -16.54558 -16.02070 -15.13709 -14.78688 -14.66245 -14.40504 -13.92414 -13.76533 -13.61743 -13.48519 -12.81360 -12.69705 -12.58246 -12.28817 -12.04451 -12.01442 -11.86838 -11.69248 -11.43304 -11.31178 -11.06500 -10.90133 -10.86367 -10.66725 -10.38366 -10.23307 -9.76875 -9.02306 -8.51684 -8.45597 -7.88204 -6.12966 -4.18219 2.70834 2.80766 3.10317 3.25855 3.31355 3.33007 3.58880 4.06456 4.21369 4.35988 4.37246 4.70862 4.90677 5.07920 5.09232 5.13962 5.22295 5.31884 5.41065 5.51925 5.55688 5.67651 5.77497 5.83438 5.92737 5.95265 5.96888 6.05929 6.08745 6.28193 6.42992 6.90341 7.31347 7.37951 7.39942 7.56695 7.82638 8.12385 8.20718 8.76389 8.91686 9.47377 10.95088 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.007601 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.346651 B = 3682.884311 C = 4706.454856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.139 4.139 4 C 0.022 3.978 5 N -0.638 5.638 6 C 0.023 3.977 7 H 0.119 0.881 8 C 0.515 3.485 9 O -0.530 6.530 10 N -0.591 5.591 11 C 0.244 3.756 12 C -0.530 4.530 13 H 0.057 0.943 14 C 0.064 3.936 15 N -0.892 5.892 16 Si 0.895 3.105 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.277 1.277 20 C 0.112 3.888 21 C -0.053 4.053 22 C 0.217 3.783 23 N -0.444 5.444 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.351 0.649 33 H 0.035 0.965 34 H 0.047 0.953 35 H 0.265 0.735 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.250 -6.836 -10.174 13.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.196 4.196 4 C -0.108 4.108 5 N -0.268 5.268 6 C -0.091 4.091 7 H 0.137 0.863 8 C 0.301 3.699 9 O -0.406 6.406 10 N -0.323 5.323 11 C 0.125 3.875 12 C -0.569 4.569 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.014 4.014 21 C -0.094 4.094 22 C -0.101 4.101 23 N -0.122 5.122 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.170 0.830 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.012 -7.982 -9.878 14.051 hybrid contribution 0.086 2.226 -0.004 2.227 sum -5.926 -5.756 -9.882 12.881 Atomic orbital electron populations 1.21876 0.93824 1.01919 1.02539 1.23415 0.96712 0.96382 0.94830 1.21715 1.00625 0.93703 1.03593 1.23778 0.95315 0.96986 0.94770 1.65231 1.05823 1.54385 1.01404 1.23549 0.95744 0.97539 0.92265 0.86339 1.20147 0.86631 0.79769 0.83375 1.90678 1.16350 1.53365 1.80254 1.48133 1.11983 1.51782 1.20369 1.19370 0.95644 0.89173 0.83287 1.21351 1.36388 0.91136 1.08007 0.92450 1.24906 0.94865 0.99111 0.94983 1.69905 1.37071 1.34272 1.11789 0.86607 0.78472 0.84686 0.77963 1.20226 1.21146 1.20204 1.21442 0.85756 0.92195 1.02056 1.19931 0.84871 0.98626 1.05976 1.29082 0.94904 0.93207 0.92884 1.81206 1.12332 1.09381 1.09249 0.91692 0.92102 0.92235 0.92110 0.92117 0.90504 0.88561 0.90833 0.83015 0.94712 0.93456 0.92559 0.88650 0.90343 0.87458 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.45 37.16 0.31 -1.15 16 2 C -0.11 -1.36 1.34 -153.57 -0.21 -1.57 16 3 C -0.14 -1.98 8.21 37.16 0.31 -1.67 16 4 C 0.02 0.24 8.00 -2.76 -0.02 0.21 16 5 N -0.64 -8.85 8.45 -110.95 -0.94 -9.79 16 6 C 0.02 0.32 3.04 -67.81 -0.21 0.11 16 7 H 0.12 1.40 6.34 -51.93 -0.33 1.07 16 8 C 0.52 9.36 5.60 -10.98 -0.06 9.30 16 9 O -0.53 -11.93 15.43 5.55 0.09 -11.85 16 10 N -0.59 -10.63 2.46 -175.07 -0.43 -11.06 16 11 C 0.24 5.68 5.18 -5.19 -0.03 5.65 16 12 C -0.53 -13.73 9.39 -34.44 -0.32 -14.05 16 13 H 0.06 1.47 7.81 -52.48 -0.41 1.06 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 16 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.11 1.50 5.01 -4.04 -0.02 1.48 16 21 C -0.05 -0.56 5.89 -29.52 -0.17 -0.74 16 22 C 0.22 2.64 15.43 -20.76 -0.32 2.32 16 23 N -0.44 -6.50 18.54 42.15 0.78 -5.72 16 24 H 0.06 0.71 6.47 -51.93 -0.34 0.37 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 27 H 0.06 0.91 7.38 -51.93 -0.38 0.53 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.34 7.46 -51.93 -0.39 0.95 16 30 H 0.10 0.91 8.05 -51.93 -0.42 0.50 16 31 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.35 5.40 6.98 -39.29 -0.27 5.12 16 33 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.05 1.27 7.36 -51.93 -0.38 0.89 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.10 1.35 8.05 -51.93 -0.42 0.93 16 37 H 0.08 0.92 4.12 -51.93 -0.21 0.70 16 38 H 0.11 0.99 7.29 -51.93 -0.38 0.61 16 39 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 324.31 15.07 4.89 4.89 Total: -1.00 -30.84 324.31 -6.33 -37.17 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.59 Total: 3.45 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -0.84 Total: 1.51 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 0.15 Total: -50.95 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.84 -6.33 -37.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710044490.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.021 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds