Wall clock time and date at job start Mon Mar 30 2020 04:41:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.53002 * 112.93391 * 2 1
4 4 C 1.53935 * 113.73294 * 228.29275 * 2 1 3
5 5 N 1.47969 * 86.17541 * 221.92164 * 4 2 1
6 6 C 1.47955 * 90.76221 * 24.68999 * 5 4 2
7 7 H 1.09000 * 113.85975 * 89.64630 * 6 5 4
8 8 C 1.50700 * 113.75527 * 220.99061 * 6 5 4
9 9 O 1.21285 * 120.00345 * 7.10704 * 8 6 5
10 10 N 1.34783 * 120.00067 * 186.83089 * 8 6 5
11 11 C 1.46494 * 120.00268 * 184.99867 * 10 8 6
12 12 C 1.50704 * 109.46940 * 90.00062 * 11 10 8
13 13 H 1.08005 * 119.99924 * 0.02562 * 12 11 10
14 14 C 1.37877 * 120.00171 * 179.97438 * 12 11 10
15 15 N 1.31508 * 119.99820 * 0.02562 * 14 12 11
16 16 Si 1.86801 * 120.00010 * 180.02562 * 14 12 11
17 17 H 1.48498 * 109.47296 * 59.99804 * 16 14 12
18 18 H 1.48496 * 109.47146 * 180.02562 * 16 14 12
19 19 H 1.48507 * 109.47066 * 300.00057 * 16 14 12
20 20 C 1.46502 * 119.99737 * 5.00629 * 10 8 6
21 21 C 1.52992 * 109.47133 * 86.56240 * 20 10 8
22 22 C 1.47210 * 109.47128 * 180.02562 * 21 20 10
23 23 N 5.98324 * 56.32260 * 122.70652 * 2 1 3
24 24 H 1.09002 * 109.46989 * 294.99033 * 1 2 3
25 25 H 1.09004 * 109.46793 * 54.99230 * 1 2 3
26 26 H 1.09003 * 109.46900 * 174.98885 * 1 2 3
27 27 H 1.09003 * 109.46322 * 191.56821 * 3 2 1
28 28 H 1.09001 * 109.47133 * 311.56138 * 3 2 1
29 29 H 1.08998 * 109.47319 * 71.56765 * 3 2 1
30 30 H 1.09001 * 113.75837 * 336.23485 * 4 2 1
31 31 H 1.08993 * 113.76022 * 107.60325 * 4 2 1
32 32 H 1.00898 * 110.99465 * 271.79310 * 5 4 2
33 33 H 1.08990 * 109.47384 * 210.00248 * 11 10 8
34 34 H 1.08997 * 109.47480 * 330.00871 * 11 10 8
35 35 H 0.97003 * 120.00057 * 179.97438 * 15 14 12
36 36 H 1.08996 * 109.47083 * 206.56337 * 20 10 8
37 37 H 1.08996 * 109.47075 * 326.55987 * 20 10 8
38 38 H 1.09007 * 109.47614 * 299.99702 * 21 20 10
39 39 H 1.09000 * 109.47544 * 60.00378 * 21 20 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.1263 1.4091 0.0000
4 6 2.1496 -0.9376 -1.0520
5 7 3.1155 -1.3197 0.0018
6 6 2.1496 -0.9349 1.0543
7 1 1.4898 -1.7451 1.3649
8 6 2.7758 -0.2086 2.2168
9 8 3.9417 0.1221 2.1684
10 7 2.0387 0.0785 3.3082
11 6 2.6148 0.8792 4.3913
12 6 2.3445 2.3395 4.1349
13 1 1.7979 2.6408 3.2534
14 6 2.7940 3.2907 5.0260
15 7 3.4591 2.9237 6.0995
16 14 2.4584 5.1006 4.7085
17 1 0.9923 5.3292 4.6490
18 1 3.0423 5.9124 5.8063
19 1 3.0742 5.4992 3.4172
20 6 0.6616 -0.4104 3.4113
21 6 0.6640 -1.8200 4.0061
22 6 -0.7198 -2.3115 4.1091
23 7 -1.7877 -2.6904 4.1897
24 1 -0.3633 0.4342 0.9315
25 1 -0.3633 0.5896 -0.8418
26 1 -0.3633 -1.0238 -0.0898
27 1 3.1951 1.3512 -0.2061
28 1 1.6400 2.0094 -0.7689
29 1 1.9686 1.8703 0.9749
30 1 1.4905 -1.7496 -1.3590
31 1 2.6025 -0.4144 -1.8941
32 1 3.9142 -0.7031 0.0009
33 1 2.1628 0.5870 5.3391
34 1 3.6908 0.7112 4.4347
35 1 3.7758 3.5929 6.7263
36 1 0.0871 0.2549 4.0558
37 1 0.2096 -0.4352 2.4197
38 1 1.2384 -2.4855 3.3616
39 1 1.1159 -1.7952 4.9977
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000710044490.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:41:53
Heat of formation + Delta-G solvation = 19.852124 kcal
Electronic energy + Delta-G solvation = -21011.355261 eV
Core-core repulsion = 17955.116663 eV
Total energy + Delta-G solvation = -3056.238597 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 265.153 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-40.91097 -38.13679 -36.83242 -35.29609 -32.92558 -31.55230 -30.88057 -28.28284
-27.46189 -26.21342 -24.16475 -23.72274 -22.62809 -19.48030 -18.19759 -17.60615
-16.84787 -16.54558 -16.02070 -15.13709 -14.78688 -14.66245 -14.40504 -13.92414
-13.76533 -13.61743 -13.48519 -12.81360 -12.69705 -12.58246 -12.28817 -12.04451
-12.01442 -11.86838 -11.69248 -11.43304 -11.31178 -11.06500 -10.90133 -10.86367
-10.66725 -10.38366 -10.23307 -9.76875 -9.02306 -8.51684 -8.45597 -7.88204
-6.12966 -4.18219 2.70834 2.80766 3.10317 3.25855 3.31355 3.33007
3.58880 4.06456 4.21369 4.35988 4.37246 4.70862 4.90677 5.07920
5.09232 5.13962 5.22295 5.31884 5.41065 5.51925 5.55688 5.67651
5.77497 5.83438 5.92737 5.95265 5.96888 6.05929 6.08745 6.28193
6.42992 6.90341 7.31347 7.37951 7.39942 7.56695 7.82638 8.12385
8.20718 8.76389 8.91686 9.47377 10.95088
Molecular weight = 265.15amu
Principal moments of inertia in cm(-1)
A = 0.014150 B = 0.007601 C = 0.005948
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1978.346651 B = 3682.884311 C = 4706.454856
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.112 4.112
3 C -0.139 4.139
4 C 0.022 3.978
5 N -0.638 5.638
6 C 0.023 3.977
7 H 0.119 0.881
8 C 0.515 3.485
9 O -0.530 6.530
10 N -0.591 5.591
11 C 0.244 3.756
12 C -0.530 4.530
13 H 0.057 0.943
14 C 0.064 3.936
15 N -0.892 5.892
16 Si 0.895 3.105
17 H -0.277 1.277
18 H -0.286 1.286
19 H -0.277 1.277
20 C 0.112 3.888
21 C -0.053 4.053
22 C 0.217 3.783
23 N -0.444 5.444
24 H 0.064 0.936
25 H 0.060 0.940
26 H 0.059 0.941
27 H 0.060 0.940
28 H 0.060 0.940
29 H 0.076 0.924
30 H 0.096 0.904
31 H 0.073 0.927
32 H 0.351 0.649
33 H 0.035 0.965
34 H 0.047 0.953
35 H 0.265 0.735
36 H 0.095 0.905
37 H 0.078 0.922
38 H 0.107 0.893
39 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.250 -6.836 -10.174 13.334
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.113 4.113
3 C -0.196 4.196
4 C -0.108 4.108
5 N -0.268 5.268
6 C -0.091 4.091
7 H 0.137 0.863
8 C 0.301 3.699
9 O -0.406 6.406
10 N -0.323 5.323
11 C 0.125 3.875
12 C -0.569 4.569
13 H 0.075 0.925
14 C -0.139 4.139
15 N -0.530 5.530
16 Si 0.723 3.277
17 H -0.202 1.202
18 H -0.211 1.211
19 H -0.202 1.202
20 C -0.014 4.014
21 C -0.094 4.094
22 C -0.101 4.101
23 N -0.122 5.122
24 H 0.083 0.917
25 H 0.079 0.921
26 H 0.078 0.922
27 H 0.079 0.921
28 H 0.079 0.921
29 H 0.095 0.905
30 H 0.114 0.886
31 H 0.092 0.908
32 H 0.170 0.830
33 H 0.053 0.947
34 H 0.065 0.935
35 H 0.074 0.926
36 H 0.114 0.886
37 H 0.097 0.903
38 H 0.125 0.875
39 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges -6.012 -7.982 -9.878 14.051
hybrid contribution 0.086 2.226 -0.004 2.227
sum -5.926 -5.756 -9.882 12.881
Atomic orbital electron populations
1.21876 0.93824 1.01919 1.02539 1.23415 0.96712 0.96382 0.94830
1.21715 1.00625 0.93703 1.03593 1.23778 0.95315 0.96986 0.94770
1.65231 1.05823 1.54385 1.01404 1.23549 0.95744 0.97539 0.92265
0.86339 1.20147 0.86631 0.79769 0.83375 1.90678 1.16350 1.53365
1.80254 1.48133 1.11983 1.51782 1.20369 1.19370 0.95644 0.89173
0.83287 1.21351 1.36388 0.91136 1.08007 0.92450 1.24906 0.94865
0.99111 0.94983 1.69905 1.37071 1.34272 1.11789 0.86607 0.78472
0.84686 0.77963 1.20226 1.21146 1.20204 1.21442 0.85756 0.92195
1.02056 1.19931 0.84871 0.98626 1.05976 1.29082 0.94904 0.93207
0.92884 1.81206 1.12332 1.09381 1.09249 0.91692 0.92102 0.92235
0.92110 0.92117 0.90504 0.88561 0.90833 0.83015 0.94712 0.93456
0.92559 0.88650 0.90343 0.87458 0.86447
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.47 8.45 37.16 0.31 -1.15 16
2 C -0.11 -1.36 1.34 -153.57 -0.21 -1.57 16
3 C -0.14 -1.98 8.21 37.16 0.31 -1.67 16
4 C 0.02 0.24 8.00 -2.76 -0.02 0.21 16
5 N -0.64 -8.85 8.45 -110.95 -0.94 -9.79 16
6 C 0.02 0.32 3.04 -67.81 -0.21 0.11 16
7 H 0.12 1.40 6.34 -51.93 -0.33 1.07 16
8 C 0.52 9.36 5.60 -10.98 -0.06 9.30 16
9 O -0.53 -11.93 15.43 5.55 0.09 -11.85 16
10 N -0.59 -10.63 2.46 -175.07 -0.43 -11.06 16
11 C 0.24 5.68 5.18 -5.19 -0.03 5.65 16
12 C -0.53 -13.73 9.39 -34.44 -0.32 -14.05 16
13 H 0.06 1.47 7.81 -52.48 -0.41 1.06 16
14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16
15 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16
16 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16
17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16
19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
20 C 0.11 1.50 5.01 -4.04 -0.02 1.48 16
21 C -0.05 -0.56 5.89 -29.52 -0.17 -0.74 16
22 C 0.22 2.64 15.43 -20.76 -0.32 2.32 16
23 N -0.44 -6.50 18.54 42.15 0.78 -5.72 16
24 H 0.06 0.71 6.47 -51.93 -0.34 0.37 16
25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
26 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16
27 H 0.06 0.91 7.38 -51.93 -0.38 0.53 16
28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
29 H 0.08 1.34 7.46 -51.93 -0.39 0.95 16
30 H 0.10 0.91 8.05 -51.93 -0.42 0.50 16
31 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16
32 H 0.35 5.40 6.98 -39.29 -0.27 5.12 16
33 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16
34 H 0.05 1.27 7.36 -51.93 -0.38 0.89 16
35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16
36 H 0.10 1.35 8.05 -51.93 -0.42 0.93 16
37 H 0.08 0.92 4.12 -51.93 -0.21 0.70 16
38 H 0.11 0.99 7.29 -51.93 -0.38 0.61 16
39 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16
LS Contribution 324.31 15.07 4.89 4.89
Total: -1.00 -30.84 324.31 -6.33 -37.17
By element:
Atomic # 1 Polarization: 9.04 SS G_CDS: -5.59 Total: 3.45 kcal
Atomic # 6 Polarization: 2.35 SS G_CDS: -0.84 Total: 1.51 kcal
Atomic # 7 Polarization: -51.10 SS G_CDS: 0.15 Total: -50.95 kcal
Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.85 kcal
Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal
Total LS contribution 4.89 Total: 4.89 kcal
Total: -30.84 -6.33 -37.17 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000710044490.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.021 kcal
(2) G-P(sol) polarization free energy of solvation -30.839 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.181 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.852 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds