Wall clock time and date at job start Mon Mar 30 2020 04:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 112.93391 * 2 1 4 4 C 1.53935 * 113.73294 * 228.29275 * 2 1 3 5 5 N 1.47969 * 86.17541 * 221.92164 * 4 2 1 6 6 C 1.47955 * 90.76221 * 24.68999 * 5 4 2 7 7 H 1.09000 * 113.85975 * 89.64630 * 6 5 4 8 8 C 1.50700 * 113.75527 * 220.99061 * 6 5 4 9 9 O 1.21285 * 120.00345 * 7.10704 * 8 6 5 10 10 N 1.34783 * 120.00067 * 186.83089 * 8 6 5 11 11 C 1.46494 * 120.00268 * 184.99867 * 10 8 6 12 12 C 1.50704 * 109.46940 * 90.00062 * 11 10 8 13 13 H 1.08005 * 119.99924 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00171 * 179.97438 * 12 11 10 15 15 N 1.31508 * 119.99820 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00010 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47296 * 59.99804 * 16 14 12 18 18 H 1.48496 * 109.47146 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47066 * 300.00057 * 16 14 12 20 20 C 1.46502 * 119.99737 * 5.00629 * 10 8 6 21 21 C 1.52992 * 109.47133 * 86.56240 * 20 10 8 22 22 C 1.47210 * 109.47128 * 180.02562 * 21 20 10 23 23 N 5.98324 * 56.32260 * 122.70652 * 2 1 3 24 24 H 1.09002 * 109.46989 * 294.99033 * 1 2 3 25 25 H 1.09004 * 109.46793 * 54.99230 * 1 2 3 26 26 H 1.09003 * 109.46900 * 174.98885 * 1 2 3 27 27 H 1.09003 * 109.46322 * 191.56821 * 3 2 1 28 28 H 1.09001 * 109.47133 * 311.56138 * 3 2 1 29 29 H 1.08998 * 109.47319 * 71.56765 * 3 2 1 30 30 H 1.09001 * 113.75837 * 336.23485 * 4 2 1 31 31 H 1.08993 * 113.76022 * 107.60325 * 4 2 1 32 32 H 1.00898 * 110.99465 * 271.79310 * 5 4 2 33 33 H 1.08990 * 109.47384 * 210.00248 * 11 10 8 34 34 H 1.08997 * 109.47480 * 330.00871 * 11 10 8 35 35 H 0.97003 * 120.00057 * 179.97438 * 15 14 12 36 36 H 1.08996 * 109.47083 * 206.56337 * 20 10 8 37 37 H 1.08996 * 109.47075 * 326.55987 * 20 10 8 38 38 H 1.09007 * 109.47614 * 299.99702 * 21 20 10 39 39 H 1.09000 * 109.47544 * 60.00378 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1263 1.4091 0.0000 4 6 2.1496 -0.9376 -1.0520 5 7 3.1155 -1.3197 0.0018 6 6 2.1496 -0.9349 1.0543 7 1 1.4898 -1.7451 1.3649 8 6 2.7758 -0.2086 2.2168 9 8 3.9417 0.1221 2.1684 10 7 2.0387 0.0785 3.3082 11 6 2.6148 0.8792 4.3913 12 6 2.3445 2.3395 4.1349 13 1 1.7979 2.6408 3.2534 14 6 2.7940 3.2907 5.0260 15 7 3.4591 2.9237 6.0995 16 14 2.4584 5.1006 4.7085 17 1 0.9923 5.3292 4.6490 18 1 3.0423 5.9124 5.8063 19 1 3.0742 5.4992 3.4172 20 6 0.6616 -0.4104 3.4113 21 6 0.6640 -1.8200 4.0061 22 6 -0.7198 -2.3115 4.1091 23 7 -1.7877 -2.6904 4.1897 24 1 -0.3633 0.4342 0.9315 25 1 -0.3633 0.5896 -0.8418 26 1 -0.3633 -1.0238 -0.0898 27 1 3.1951 1.3512 -0.2061 28 1 1.6400 2.0094 -0.7689 29 1 1.9686 1.8703 0.9749 30 1 1.4905 -1.7496 -1.3590 31 1 2.6025 -0.4144 -1.8941 32 1 3.9142 -0.7031 0.0009 33 1 2.1628 0.5870 5.3391 34 1 3.6908 0.7112 4.4347 35 1 3.7758 3.5929 6.7263 36 1 0.0871 0.2549 4.0558 37 1 0.2096 -0.4352 2.4197 38 1 1.2384 -2.4855 3.3616 39 1 1.1159 -1.7952 4.9977 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710044490.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:52 Heat of formation + Delta-G solvation = -2.035203 kcal Electronic energy + Delta-G solvation = -21012.304366 eV Core-core repulsion = 17955.116663 eV Total energy + Delta-G solvation = -3057.187703 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.07691 -39.45322 -37.98642 -36.71360 -34.86070 -32.53137 -32.21346 -29.87279 -28.46725 -27.66155 -25.34856 -24.98660 -24.11515 -20.76417 -19.32418 -18.80727 -18.37126 -18.12482 -17.42041 -16.50050 -16.35671 -15.74411 -15.46262 -15.34853 -14.98420 -14.68713 -14.55722 -14.22390 -13.85716 -13.82958 -13.63753 -13.45238 -13.19900 -13.04780 -12.94686 -12.92038 -12.69341 -12.52801 -12.31455 -12.17945 -11.96103 -11.83062 -11.69779 -11.38092 -10.59196 -10.48912 -9.55906 -9.41669 -8.18495 -6.30821 1.38976 1.41327 1.48082 1.60868 1.80837 1.83118 2.23145 2.43381 3.03526 3.12929 3.15597 3.31104 3.63926 3.83246 4.02421 4.09707 4.11060 4.35505 4.47100 4.58088 4.68716 4.71641 4.79054 4.83393 4.94877 5.00909 5.03407 5.04528 5.14826 5.16340 5.25537 5.34100 5.43917 5.61075 5.86454 6.11631 6.23268 6.58782 6.71421 6.79944 7.31622 7.46950 8.88282 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.007601 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.346651 B = 3682.884311 C = 4706.454856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 C -0.136 4.136 4 C 0.033 3.967 5 N -0.650 5.650 6 C 0.027 3.973 7 H 0.149 0.851 8 C 0.511 3.489 9 O -0.583 6.583 10 N -0.591 5.591 11 C 0.259 3.741 12 C -0.537 4.537 13 H 0.056 0.944 14 C 0.012 3.988 15 N -0.926 5.926 16 Si 0.955 3.045 17 H -0.262 1.262 18 H -0.283 1.283 19 H -0.279 1.279 20 C 0.109 3.891 21 C -0.041 4.041 22 C 0.245 3.755 23 N -0.483 5.483 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.339 0.661 33 H 0.033 0.967 34 H 0.003 0.997 35 H 0.265 0.735 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.133 0.867 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.178 -7.566 -12.005 15.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.193 4.193 4 C -0.096 4.096 5 N -0.279 5.279 6 C -0.087 4.087 7 H 0.166 0.834 8 C 0.299 3.701 9 O -0.463 6.463 10 N -0.321 5.321 11 C 0.138 3.862 12 C -0.575 4.575 13 H 0.074 0.926 14 C -0.187 4.187 15 N -0.566 5.566 16 Si 0.780 3.220 17 H -0.187 1.187 18 H -0.209 1.209 19 H -0.204 1.204 20 C -0.016 4.016 21 C -0.082 4.082 22 C -0.072 4.072 23 N -0.161 5.161 24 H 0.074 0.926 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.141 0.859 31 H 0.103 0.897 32 H 0.156 0.844 33 H 0.051 0.949 34 H 0.021 0.979 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.150 0.850 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.999 -8.739 -11.724 16.667 hybrid contribution 0.728 2.448 0.539 2.611 sum -7.271 -6.290 -11.185 14.749 Atomic orbital electron populations 1.21886 0.91667 1.03630 1.02714 1.23370 0.98236 0.94784 0.94525 1.21652 1.00087 0.95570 1.02010 1.23912 0.94417 0.97237 0.94063 1.65303 1.06034 1.54124 1.02466 1.23685 0.96070 0.98441 0.90482 0.83352 1.20968 0.85990 0.79102 0.84018 1.90649 1.18879 1.55582 1.81219 1.47991 1.13721 1.51212 1.19224 1.18819 0.93320 0.89046 0.84976 1.21684 1.35679 0.92609 1.07576 0.92571 1.25714 0.94825 1.03299 0.94898 1.70020 1.38313 1.35501 1.12744 0.85655 0.78985 0.79813 0.77516 1.18707 1.20864 1.20419 1.21635 0.82944 0.93380 1.03624 1.19846 0.84451 0.97215 1.06673 1.29032 0.94484 0.92096 0.91606 1.81249 1.13427 1.10731 1.10651 0.92581 0.90743 0.89945 0.93834 0.89932 0.94287 0.85871 0.89748 0.84403 0.94938 0.97895 0.92594 0.89452 0.87935 0.84961 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.45 71.98 0.61 -1.71 16 2 C -0.11 -2.33 1.34 -51.53 -0.07 -2.40 16 3 C -0.14 -3.76 8.21 71.98 0.59 -3.17 16 4 C 0.03 0.61 8.00 86.40 0.69 1.30 16 5 N -0.65 -16.82 8.45 -504.94 -4.26 -21.09 16 6 C 0.03 0.68 3.04 44.27 0.13 0.81 16 7 H 0.15 2.89 6.34 -2.39 -0.02 2.87 16 8 C 0.51 18.64 5.60 87.66 0.49 19.13 16 9 O -0.58 -27.38 15.43 -3.04 -0.05 -27.43 16 10 N -0.59 -21.32 2.46 -826.18 -2.03 -23.35 16 11 C 0.26 12.52 5.18 85.64 0.44 12.96 16 12 C -0.54 -28.48 9.39 25.60 0.24 -28.24 16 13 H 0.06 2.93 7.81 -2.91 -0.02 2.90 16 14 C 0.01 0.65 5.46 84.66 0.46 1.11 16 15 N -0.93 -53.55 13.29 21.45 0.28 -53.26 16 16 Si 0.95 43.07 29.54 68.60 2.03 45.09 16 17 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 C 0.11 2.73 5.01 86.38 0.43 3.17 16 21 C -0.04 -0.78 5.89 28.79 0.17 -0.61 16 22 C 0.25 5.34 15.43 89.44 1.38 6.72 16 23 N -0.48 -13.15 18.54 20.01 0.37 -12.78 16 24 H 0.06 1.03 6.47 -2.39 -0.02 1.02 16 25 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 27 H 0.04 1.33 7.38 -2.39 -0.02 1.31 16 28 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.04 1.36 7.46 -2.39 -0.02 1.35 16 30 H 0.12 1.68 8.05 -2.39 -0.02 1.67 16 31 H 0.08 1.41 8.10 -2.39 -0.02 1.39 16 32 H 0.34 10.36 6.98 -89.70 -0.63 9.73 16 33 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 34 H 0.00 0.17 7.36 -2.39 -0.02 0.15 16 35 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 36 H 0.09 2.37 8.05 -2.39 -0.02 2.35 16 37 H 0.10 2.10 4.12 -2.39 -0.01 2.09 16 38 H 0.13 1.96 7.29 -2.38 -0.02 1.94 16 39 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -69.93 324.31 2.35 -67.58 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.44 Total: 16.16 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 5.58 Total: 9.08 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -5.64 Total: -110.49 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.05 Total: -27.43 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -69.93 2.35 -67.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710044490.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.548 kcal (2) G-P(sol) polarization free energy of solvation -69.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds