Wall clock time and date at job start Mon Mar 30 2020 04:41:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.53002 * 112.93391 * 2 1
4 4 C 1.53935 * 113.73294 * 228.29275 * 2 1 3
5 5 N 1.47969 * 86.17541 * 221.92164 * 4 2 1
6 6 C 1.47955 * 90.76221 * 24.68999 * 5 4 2
7 7 H 1.09000 * 113.85975 * 89.64630 * 6 5 4
8 8 C 1.50700 * 113.75527 * 220.99061 * 6 5 4
9 9 O 1.21285 * 120.00345 * 7.10704 * 8 6 5
10 10 N 1.34783 * 120.00067 * 186.83089 * 8 6 5
11 11 C 1.46494 * 120.00268 * 184.99867 * 10 8 6
12 12 C 1.50704 * 109.46940 * 90.00062 * 11 10 8
13 13 H 1.08005 * 119.99924 * 0.02562 * 12 11 10
14 14 C 1.37877 * 120.00171 * 179.97438 * 12 11 10
15 15 N 1.31508 * 119.99820 * 0.02562 * 14 12 11
16 16 Si 1.86801 * 120.00010 * 180.02562 * 14 12 11
17 17 H 1.48498 * 109.47296 * 59.99804 * 16 14 12
18 18 H 1.48496 * 109.47146 * 180.02562 * 16 14 12
19 19 H 1.48507 * 109.47066 * 300.00057 * 16 14 12
20 20 C 1.46502 * 119.99737 * 5.00629 * 10 8 6
21 21 C 1.52992 * 109.47133 * 86.56240 * 20 10 8
22 22 C 1.47210 * 109.47128 * 180.02562 * 21 20 10
23 23 N 5.98324 * 56.32260 * 122.70652 * 2 1 3
24 24 H 1.09002 * 109.46989 * 294.99033 * 1 2 3
25 25 H 1.09004 * 109.46793 * 54.99230 * 1 2 3
26 26 H 1.09003 * 109.46900 * 174.98885 * 1 2 3
27 27 H 1.09003 * 109.46322 * 191.56821 * 3 2 1
28 28 H 1.09001 * 109.47133 * 311.56138 * 3 2 1
29 29 H 1.08998 * 109.47319 * 71.56765 * 3 2 1
30 30 H 1.09001 * 113.75837 * 336.23485 * 4 2 1
31 31 H 1.08993 * 113.76022 * 107.60325 * 4 2 1
32 32 H 1.00898 * 110.99465 * 271.79310 * 5 4 2
33 33 H 1.08990 * 109.47384 * 210.00248 * 11 10 8
34 34 H 1.08997 * 109.47480 * 330.00871 * 11 10 8
35 35 H 0.97003 * 120.00057 * 179.97438 * 15 14 12
36 36 H 1.08996 * 109.47083 * 206.56337 * 20 10 8
37 37 H 1.08996 * 109.47075 * 326.55987 * 20 10 8
38 38 H 1.09007 * 109.47614 * 299.99702 * 21 20 10
39 39 H 1.09000 * 109.47544 * 60.00378 * 21 20 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.1263 1.4091 0.0000
4 6 2.1496 -0.9376 -1.0520
5 7 3.1155 -1.3197 0.0018
6 6 2.1496 -0.9349 1.0543
7 1 1.4898 -1.7451 1.3649
8 6 2.7758 -0.2086 2.2168
9 8 3.9417 0.1221 2.1684
10 7 2.0387 0.0785 3.3082
11 6 2.6148 0.8792 4.3913
12 6 2.3445 2.3395 4.1349
13 1 1.7979 2.6408 3.2534
14 6 2.7940 3.2907 5.0260
15 7 3.4591 2.9237 6.0995
16 14 2.4584 5.1006 4.7085
17 1 0.9923 5.3292 4.6490
18 1 3.0423 5.9124 5.8063
19 1 3.0742 5.4992 3.4172
20 6 0.6616 -0.4104 3.4113
21 6 0.6640 -1.8200 4.0061
22 6 -0.7198 -2.3115 4.1091
23 7 -1.7877 -2.6904 4.1897
24 1 -0.3633 0.4342 0.9315
25 1 -0.3633 0.5896 -0.8418
26 1 -0.3633 -1.0238 -0.0898
27 1 3.1951 1.3512 -0.2061
28 1 1.6400 2.0094 -0.7689
29 1 1.9686 1.8703 0.9749
30 1 1.4905 -1.7496 -1.3590
31 1 2.6025 -0.4144 -1.8941
32 1 3.9142 -0.7031 0.0009
33 1 2.1628 0.5870 5.3391
34 1 3.6908 0.7112 4.4347
35 1 3.7758 3.5929 6.7263
36 1 0.0871 0.2549 4.0558
37 1 0.2096 -0.4352 2.4197
38 1 1.2384 -2.4855 3.3616
39 1 1.1159 -1.7952 4.9977
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000710044490.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:41:52
Heat of formation + Delta-G solvation = -2.035203 kcal
Electronic energy + Delta-G solvation = -21012.304366 eV
Core-core repulsion = 17955.116663 eV
Total energy + Delta-G solvation = -3057.187703 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 265.153 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-42.07691 -39.45322 -37.98642 -36.71360 -34.86070 -32.53137 -32.21346 -29.87279
-28.46725 -27.66155 -25.34856 -24.98660 -24.11515 -20.76417 -19.32418 -18.80727
-18.37126 -18.12482 -17.42041 -16.50050 -16.35671 -15.74411 -15.46262 -15.34853
-14.98420 -14.68713 -14.55722 -14.22390 -13.85716 -13.82958 -13.63753 -13.45238
-13.19900 -13.04780 -12.94686 -12.92038 -12.69341 -12.52801 -12.31455 -12.17945
-11.96103 -11.83062 -11.69779 -11.38092 -10.59196 -10.48912 -9.55906 -9.41669
-8.18495 -6.30821 1.38976 1.41327 1.48082 1.60868 1.80837 1.83118
2.23145 2.43381 3.03526 3.12929 3.15597 3.31104 3.63926 3.83246
4.02421 4.09707 4.11060 4.35505 4.47100 4.58088 4.68716 4.71641
4.79054 4.83393 4.94877 5.00909 5.03407 5.04528 5.14826 5.16340
5.25537 5.34100 5.43917 5.61075 5.86454 6.11631 6.23268 6.58782
6.71421 6.79944 7.31622 7.46950 8.88282
Molecular weight = 265.15amu
Principal moments of inertia in cm(-1)
A = 0.014150 B = 0.007601 C = 0.005948
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1978.346651 B = 3682.884311 C = 4706.454856
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.108 4.108
3 C -0.136 4.136
4 C 0.033 3.967
5 N -0.650 5.650
6 C 0.027 3.973
7 H 0.149 0.851
8 C 0.511 3.489
9 O -0.583 6.583
10 N -0.591 5.591
11 C 0.259 3.741
12 C -0.537 4.537
13 H 0.056 0.944
14 C 0.012 3.988
15 N -0.926 5.926
16 Si 0.955 3.045
17 H -0.262 1.262
18 H -0.283 1.283
19 H -0.279 1.279
20 C 0.109 3.891
21 C -0.041 4.041
22 C 0.245 3.755
23 N -0.483 5.483
24 H 0.055 0.945
25 H 0.074 0.926
26 H 0.082 0.918
27 H 0.043 0.957
28 H 0.082 0.918
29 H 0.038 0.962
30 H 0.123 0.877
31 H 0.084 0.916
32 H 0.339 0.661
33 H 0.033 0.967
34 H 0.003 0.997
35 H 0.265 0.735
36 H 0.087 0.913
37 H 0.103 0.897
38 H 0.133 0.867
39 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.178 -7.566 -12.005 15.902
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.109 4.109
3 C -0.193 4.193
4 C -0.096 4.096
5 N -0.279 5.279
6 C -0.087 4.087
7 H 0.166 0.834
8 C 0.299 3.701
9 O -0.463 6.463
10 N -0.321 5.321
11 C 0.138 3.862
12 C -0.575 4.575
13 H 0.074 0.926
14 C -0.187 4.187
15 N -0.566 5.566
16 Si 0.780 3.220
17 H -0.187 1.187
18 H -0.209 1.209
19 H -0.204 1.204
20 C -0.016 4.016
21 C -0.082 4.082
22 C -0.072 4.072
23 N -0.161 5.161
24 H 0.074 0.926
25 H 0.093 0.907
26 H 0.101 0.899
27 H 0.062 0.938
28 H 0.101 0.899
29 H 0.057 0.943
30 H 0.141 0.859
31 H 0.103 0.897
32 H 0.156 0.844
33 H 0.051 0.949
34 H 0.021 0.979
35 H 0.074 0.926
36 H 0.105 0.895
37 H 0.121 0.879
38 H 0.150 0.850
39 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -7.999 -8.739 -11.724 16.667
hybrid contribution 0.728 2.448 0.539 2.611
sum -7.271 -6.290 -11.185 14.749
Atomic orbital electron populations
1.21886 0.91667 1.03630 1.02714 1.23370 0.98236 0.94784 0.94525
1.21652 1.00087 0.95570 1.02010 1.23912 0.94417 0.97237 0.94063
1.65303 1.06034 1.54124 1.02466 1.23685 0.96070 0.98441 0.90482
0.83352 1.20968 0.85990 0.79102 0.84018 1.90649 1.18879 1.55582
1.81219 1.47991 1.13721 1.51212 1.19224 1.18819 0.93320 0.89046
0.84976 1.21684 1.35679 0.92609 1.07576 0.92571 1.25714 0.94825
1.03299 0.94898 1.70020 1.38313 1.35501 1.12744 0.85655 0.78985
0.79813 0.77516 1.18707 1.20864 1.20419 1.21635 0.82944 0.93380
1.03624 1.19846 0.84451 0.97215 1.06673 1.29032 0.94484 0.92096
0.91606 1.81249 1.13427 1.10731 1.10651 0.92581 0.90743 0.89945
0.93834 0.89932 0.94287 0.85871 0.89748 0.84403 0.94938 0.97895
0.92594 0.89452 0.87935 0.84961 0.86009
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.32 8.45 71.98 0.61 -1.71 16
2 C -0.11 -2.33 1.34 -51.53 -0.07 -2.40 16
3 C -0.14 -3.76 8.21 71.98 0.59 -3.17 16
4 C 0.03 0.61 8.00 86.40 0.69 1.30 16
5 N -0.65 -16.82 8.45 -504.94 -4.26 -21.09 16
6 C 0.03 0.68 3.04 44.27 0.13 0.81 16
7 H 0.15 2.89 6.34 -2.39 -0.02 2.87 16
8 C 0.51 18.64 5.60 87.66 0.49 19.13 16
9 O -0.58 -27.38 15.43 -3.04 -0.05 -27.43 16
10 N -0.59 -21.32 2.46 -826.18 -2.03 -23.35 16
11 C 0.26 12.52 5.18 85.64 0.44 12.96 16
12 C -0.54 -28.48 9.39 25.60 0.24 -28.24 16
13 H 0.06 2.93 7.81 -2.91 -0.02 2.90 16
14 C 0.01 0.65 5.46 84.66 0.46 1.11 16
15 N -0.93 -53.55 13.29 21.45 0.28 -53.26 16
16 Si 0.95 43.07 29.54 68.60 2.03 45.09 16
17 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16
18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
20 C 0.11 2.73 5.01 86.38 0.43 3.17 16
21 C -0.04 -0.78 5.89 28.79 0.17 -0.61 16
22 C 0.25 5.34 15.43 89.44 1.38 6.72 16
23 N -0.48 -13.15 18.54 20.01 0.37 -12.78 16
24 H 0.06 1.03 6.47 -2.39 -0.02 1.02 16
25 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16
26 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16
27 H 0.04 1.33 7.38 -2.39 -0.02 1.31 16
28 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16
29 H 0.04 1.36 7.46 -2.39 -0.02 1.35 16
30 H 0.12 1.68 8.05 -2.39 -0.02 1.67 16
31 H 0.08 1.41 8.10 -2.39 -0.02 1.39 16
32 H 0.34 10.36 6.98 -89.70 -0.63 9.73 16
33 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16
34 H 0.00 0.17 7.36 -2.39 -0.02 0.15 16
35 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16
36 H 0.09 2.37 8.05 -2.39 -0.02 2.35 16
37 H 0.10 2.10 4.12 -2.39 -0.01 2.09 16
38 H 0.13 1.96 7.29 -2.38 -0.02 1.94 16
39 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16
Total: -1.00 -69.93 324.31 2.35 -67.58
By element:
Atomic # 1 Polarization: 15.72 SS G_CDS: 0.44 Total: 16.16 kcal
Atomic # 6 Polarization: 3.51 SS G_CDS: 5.58 Total: 9.08 kcal
Atomic # 7 Polarization: -104.85 SS G_CDS: -5.64 Total: -110.49 kcal
Atomic # 8 Polarization: -27.38 SS G_CDS: -0.05 Total: -27.43 kcal
Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal
Total: -69.93 2.35 -67.58 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000710044490.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.548 kcal
(2) G-P(sol) polarization free energy of solvation -69.934 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.385 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.584 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.035 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds