Wall clock time and date at job start Mon Mar 30 2020 05:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21288 * 120.00081 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00464 * 180.02562 * 14 13 3 17 17 H 1.09003 * 109.47154 * 39.98991 * 16 14 13 18 18 N 1.46897 * 109.47487 * 159.99732 * 16 14 13 19 19 C 1.53000 * 109.46827 * 279.99413 * 16 14 13 20 20 C 1.50701 * 109.47168 * 174.99515 * 19 16 14 21 21 C 1.34846 * 125.88544 * 85.00198 * 20 19 16 22 22 C 1.40892 * 107.41686 * 179.97438 * 21 20 19 23 23 C 1.34853 * 107.41449 * 0.02562 * 22 21 20 24 24 N 1.36338 * 108.21975 * 359.73144 * 23 22 21 25 25 H 0.96996 * 125.63579 * 180.26775 * 24 23 22 26 26 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 28 28 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 29 29 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 30 30 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 31 31 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 33 33 H 1.00902 * 111.00030 * 59.99723 * 18 16 14 34 34 H 1.00899 * 110.99894 * 183.95155 * 18 16 14 35 35 H 1.08998 * 109.47512 * 294.99902 * 19 16 14 36 36 H 1.09008 * 109.46992 * 54.99909 * 19 16 14 37 37 H 1.08006 * 126.29740 * 359.97438 * 21 20 19 38 38 H 1.08005 * 126.29513 * 180.02562 * 22 21 20 39 39 H 1.08001 * 125.88742 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4946 2.2940 1.3851 11 1 6.3969 0.2326 2.6592 12 1 6.6013 0.1568 0.2442 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3395 2.6321 -0.4344 16 6 0.0365 3.3377 -2.6549 17 1 0.3960 2.7492 -3.4990 18 7 -1.4273 3.4432 -2.7194 19 6 0.6515 4.7375 -2.7103 20 6 0.3556 5.3636 -4.0487 21 6 -0.7675 6.0340 -4.3768 22 6 -0.6342 6.4500 -5.7163 23 6 0.5651 6.0175 -6.1558 24 7 1.1796 5.3549 -5.1350 25 1 2.0570 4.9433 -5.1755 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.8288 -0.0530 2.9544 32 1 2.2721 2.1230 -1.9977 33 1 -1.7853 3.9846 -1.9469 34 1 -1.7232 3.8327 -3.6019 35 1 0.2248 5.3535 -1.9187 36 1 1.7306 4.6660 -2.5732 37 1 -1.6137 6.2182 -3.7315 38 1 -1.3592 7.0120 -6.2864 39 1 0.9706 6.1729 -7.1447 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710073822.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:19 Heat of formation + Delta-G solvation = -3.709590 kcal Electronic energy + Delta-G solvation = -20255.165827 eV Core-core repulsion = 17197.905517 eV Total energy + Delta-G solvation = -3057.260310 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.27558 -39.16162 -35.65826 -34.59745 -32.36035 -31.09955 -30.84258 -30.27493 -27.58250 -26.55958 -23.86456 -22.64352 -20.70551 -20.26425 -19.99758 -19.28223 -17.82251 -17.17760 -16.15963 -15.39469 -14.87526 -14.63647 -14.45956 -14.17006 -13.87088 -13.64574 -13.29259 -13.11097 -12.76897 -12.64117 -12.38394 -11.94376 -11.73550 -11.48827 -11.28808 -11.22494 -10.99655 -10.81512 -10.32594 -10.14065 -9.58844 -9.06533 -9.02476 -8.97696 -8.59959 -8.49405 -8.06589 -7.79251 -6.13063 -4.22895 2.11517 2.87815 3.17263 3.23188 3.29127 3.29624 3.45410 4.01846 4.34980 4.73973 4.86597 5.04914 5.11831 5.18237 5.20721 5.36247 5.45271 5.60424 5.69172 5.87739 6.11416 6.20971 6.44809 6.52959 6.72062 6.86855 7.00859 7.09408 7.19440 7.27678 7.40520 7.45633 7.48031 7.61757 7.64212 7.75396 7.90870 8.19208 8.67966 8.77737 9.16330 9.44780 10.92090 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.024019 B = 0.004688 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.474223 B = 5971.084908 C = 6856.582465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.709 5.709 14 C 0.508 3.492 15 O -0.536 6.536 16 C 0.082 3.918 17 H 0.091 0.909 18 N -0.824 5.824 19 C -0.084 4.084 20 C 0.024 3.976 21 C -0.200 4.200 22 C -0.200 4.200 23 C -0.018 4.018 24 N -0.555 5.555 25 H 0.414 0.586 26 H 0.021 0.979 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.030 0.970 30 H 0.097 0.903 31 H 0.265 0.735 32 H 0.385 0.615 33 H 0.349 0.651 34 H 0.344 0.656 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.804 8.917 -14.372 17.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.574 4.574 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.357 5.357 14 C 0.291 3.709 15 O -0.413 6.413 16 C -0.034 4.034 17 H 0.109 0.891 18 N -0.356 5.356 19 C -0.125 4.125 20 C -0.089 4.089 21 C -0.225 4.225 22 C -0.225 4.225 23 C -0.149 4.149 24 N -0.150 5.150 25 H 0.250 0.750 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.217 0.783 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.214 7.915 -13.407 16.129 hybrid contribution 1.943 0.858 -0.514 2.185 sum -2.271 8.773 -13.922 16.611 Atomic orbital electron populations 1.21842 0.98153 0.98049 1.01476 1.21928 0.92769 0.99772 1.02114 1.18758 0.94027 0.89221 0.80999 0.93368 1.21186 0.90773 1.39330 1.06106 0.92291 1.24882 0.98499 0.94828 0.95410 1.69890 1.35191 1.37503 1.09228 0.86537 0.84974 0.78252 0.77478 1.20253 1.21104 1.20210 1.46478 1.14546 1.56237 1.18470 1.20102 0.82654 0.79537 0.88562 1.90662 1.50998 1.59487 1.40162 1.21381 0.90154 0.94185 0.97725 0.89069 1.58548 1.07325 1.61418 1.08266 1.20935 1.02808 0.96671 0.92073 1.20282 0.92908 1.05724 0.90018 1.20706 0.98770 1.05962 0.97049 1.20889 0.98024 1.07349 0.96214 1.21810 0.95921 1.03342 0.93824 1.42017 1.17292 1.45055 1.10615 0.75004 0.95979 0.93263 0.93827 0.95158 0.88436 0.92496 0.78317 0.83642 0.84133 0.89093 0.90132 0.84915 0.84886 0.82095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.52 37.16 0.32 -2.84 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.73 2.24 -69.09 -0.15 6.57 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.86 8.73 -34.44 -0.30 -14.16 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 8 N -0.88 -24.51 11.30 55.43 0.63 -23.89 16 9 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.71 -14.13 5.02 -54.94 -0.28 -14.41 16 14 C 0.51 9.68 5.65 -10.99 -0.06 9.62 16 15 O -0.54 -12.22 13.39 5.55 0.07 -12.14 16 16 C 0.08 1.16 3.20 -68.87 -0.22 0.94 16 17 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 18 N -0.82 -11.40 8.92 -5.65 -0.05 -11.45 16 19 C -0.08 -1.02 5.38 -27.88 -0.15 -1.17 16 20 C 0.02 0.26 6.04 -81.79 -0.49 -0.23 16 21 C -0.20 -2.22 9.42 -39.78 -0.37 -2.59 16 22 C -0.20 -2.03 10.86 -39.78 -0.43 -2.47 16 23 C -0.02 -0.16 11.94 -16.75 -0.20 -0.36 16 24 N -0.55 -5.19 6.07 -9.12 -0.06 -5.25 16 25 H 0.41 2.95 8.96 -40.82 -0.37 2.59 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 28 H 0.04 0.99 5.64 -51.93 -0.29 0.69 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.10 2.63 5.96 -51.93 -0.31 2.32 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 32 H 0.39 6.62 8.54 -40.82 -0.35 6.27 16 33 H 0.35 4.91 8.58 -39.29 -0.34 4.57 16 34 H 0.34 4.10 7.26 -39.29 -0.29 3.82 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 37 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 319.58 15.07 4.82 4.82 Total: -1.00 -30.64 319.58 -7.86 -38.50 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -5.66 Total: 16.77 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -2.31 Total: -8.26 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.24 Total: -54.99 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.07 Total: -12.14 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.64 -7.86 -38.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710073822.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.794 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds