Wall clock time and date at job start Mon Mar 30 2020 05:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21288 * 120.00081 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00464 * 180.02562 * 14 13 3 17 17 H 1.09003 * 109.47154 * 39.98991 * 16 14 13 18 18 N 1.46897 * 109.47487 * 159.99732 * 16 14 13 19 19 C 1.53000 * 109.46827 * 279.99413 * 16 14 13 20 20 C 1.50701 * 109.47168 * 174.99515 * 19 16 14 21 21 C 1.34846 * 125.88544 * 85.00198 * 20 19 16 22 22 C 1.40892 * 107.41686 * 179.97438 * 21 20 19 23 23 C 1.34853 * 107.41449 * 0.02562 * 22 21 20 24 24 N 1.36338 * 108.21975 * 359.73144 * 23 22 21 25 25 H 0.96996 * 125.63579 * 180.26775 * 24 23 22 26 26 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 28 28 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 29 29 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 30 30 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 31 31 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 33 33 H 1.00902 * 111.00030 * 59.99723 * 18 16 14 34 34 H 1.00899 * 110.99894 * 183.95155 * 18 16 14 35 35 H 1.08998 * 109.47512 * 294.99902 * 19 16 14 36 36 H 1.09008 * 109.46992 * 54.99909 * 19 16 14 37 37 H 1.08006 * 126.29740 * 359.97438 * 21 20 19 38 38 H 1.08005 * 126.29513 * 180.02562 * 22 21 20 39 39 H 1.08001 * 125.88742 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4946 2.2940 1.3851 11 1 6.3969 0.2326 2.6592 12 1 6.6013 0.1568 0.2442 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3395 2.6321 -0.4344 16 6 0.0365 3.3377 -2.6549 17 1 0.3960 2.7492 -3.4990 18 7 -1.4273 3.4432 -2.7194 19 6 0.6515 4.7375 -2.7103 20 6 0.3556 5.3636 -4.0487 21 6 -0.7675 6.0340 -4.3768 22 6 -0.6342 6.4500 -5.7163 23 6 0.5651 6.0175 -6.1558 24 7 1.1796 5.3549 -5.1350 25 1 2.0570 4.9433 -5.1755 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.8288 -0.0530 2.9544 32 1 2.2721 2.1230 -1.9977 33 1 -1.7853 3.9846 -1.9469 34 1 -1.7232 3.8327 -3.6019 35 1 0.2248 5.3535 -1.9187 36 1 1.7306 4.6660 -2.5732 37 1 -1.6137 6.2182 -3.7315 38 1 -1.3592 7.0120 -6.2864 39 1 0.9706 6.1729 -7.1447 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710073822.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:19 Heat of formation + Delta-G solvation = -26.283469 kcal Electronic energy + Delta-G solvation = -20256.144704 eV Core-core repulsion = 17197.905517 eV Total energy + Delta-G solvation = -3058.239187 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.05874 -40.72098 -37.23564 -36.08941 -34.25864 -32.73656 -31.82451 -31.21824 -29.23695 -27.86554 -25.38463 -24.30109 -21.80173 -21.41077 -21.03915 -20.97493 -19.11146 -18.35474 -17.76338 -17.18986 -16.26701 -16.16605 -15.85758 -15.44581 -15.09047 -14.61747 -14.53269 -14.23203 -14.15096 -14.07846 -13.62239 -13.29732 -13.15721 -13.09205 -12.93356 -12.79551 -12.63514 -12.36527 -12.16923 -12.02444 -11.56027 -11.04375 -10.61825 -10.47585 -9.78197 -9.67176 -9.57444 -8.88991 -8.14407 -6.31928 1.31817 1.45399 1.46770 1.54602 1.89364 2.12426 2.35440 2.49239 2.67052 3.14940 3.69410 3.80479 4.04775 4.11622 4.26778 4.44566 4.51063 4.52142 4.60114 4.61411 4.79452 4.86116 4.89945 5.09524 5.28773 5.38168 5.43876 5.46394 5.57970 5.65059 5.81394 5.93724 6.08592 6.15587 6.18896 6.24315 6.59171 6.76482 6.80510 7.04544 7.35631 7.64148 8.90663 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.024019 B = 0.004688 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.474223 B = 5971.084908 C = 6856.582465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.002 1.002 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.704 5.704 14 C 0.504 3.496 15 O -0.577 6.577 16 C 0.098 3.902 17 H 0.108 0.892 18 N -0.830 5.830 19 C -0.072 4.072 20 C 0.008 3.992 21 C -0.210 4.210 22 C -0.223 4.223 23 C -0.007 4.007 24 N -0.550 5.550 25 H 0.424 0.576 26 H 0.042 0.958 27 H 0.024 0.976 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.347 0.653 34 H 0.357 0.643 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.133 0.867 38 H 0.145 0.855 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.667 9.461 -16.913 19.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.354 5.354 14 C 0.290 3.710 15 O -0.456 6.456 16 C -0.018 4.018 17 H 0.126 0.874 18 N -0.363 5.363 19 C -0.113 4.113 20 C -0.105 4.105 21 C -0.235 4.235 22 C -0.247 4.247 23 C -0.139 4.139 24 N -0.146 5.146 25 H 0.263 0.737 26 H 0.061 0.939 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.236 0.764 33 H 0.161 0.839 34 H 0.173 0.827 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.151 0.849 38 H 0.163 0.837 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.063 8.472 -16.004 18.365 hybrid contribution 1.526 0.730 0.250 1.710 sum -1.537 9.202 -15.754 18.309 Atomic orbital electron populations 1.21669 0.97046 0.98968 1.00321 1.21788 0.93639 0.99417 1.01127 1.18323 0.93551 0.89013 0.81499 0.98438 1.21552 0.91426 1.39059 1.06513 0.90918 1.25765 1.03173 0.94436 0.95081 1.70052 1.37114 1.38411 1.09774 0.85452 0.79270 0.78427 0.77489 1.19620 1.21405 1.18942 1.46218 1.15506 1.56157 1.17471 1.20959 0.81607 0.78623 0.89799 1.90647 1.52051 1.60783 1.42148 1.21196 0.90616 0.95085 0.94880 0.87367 1.58526 1.07090 1.61776 1.08929 1.20709 1.02668 0.95066 0.92821 1.20021 0.93622 1.06881 0.89991 1.20897 0.98877 1.05971 0.97768 1.21173 0.99169 1.08302 0.96058 1.22352 0.95321 1.01546 0.94663 1.42055 1.17610 1.44809 1.10122 0.73732 0.93907 0.95676 0.93612 0.94190 0.91151 0.92670 0.76403 0.83929 0.82663 0.90158 0.89738 0.84926 0.83685 0.78978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.52 71.98 0.61 -5.07 16 2 C -0.12 -5.98 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.12 2.24 44.25 0.10 14.22 16 4 H 0.00 -0.14 7.58 -2.39 -0.02 -0.16 16 5 C -0.55 -28.29 8.73 25.60 0.22 -28.07 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 7 C 0.02 0.83 5.30 84.66 0.45 1.28 16 8 N -0.92 -52.11 11.30 21.45 0.24 -51.87 16 9 Si 0.97 41.36 29.54 68.60 2.03 43.38 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 13 N -0.70 -27.87 5.02 -446.12 -2.24 -30.11 16 14 C 0.50 19.17 5.65 87.66 0.50 19.67 16 15 O -0.58 -26.94 13.39 -3.05 -0.04 -26.98 16 16 C 0.10 2.66 3.20 44.17 0.14 2.80 16 17 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 18 N -0.83 -22.18 8.92 -171.80 -1.53 -23.71 16 19 C -0.07 -1.66 5.38 29.85 0.16 -1.50 16 20 C 0.01 0.16 6.04 41.08 0.25 0.41 16 21 C -0.21 -4.33 9.42 22.14 0.21 -4.12 16 22 C -0.22 -4.01 10.86 22.14 0.24 -3.77 16 23 C -0.01 -0.11 11.94 83.21 0.99 0.89 16 24 N -0.55 -8.73 6.07 -182.77 -1.11 -9.84 16 25 H 0.42 4.75 8.96 -92.71 -0.83 3.92 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.02 1.24 7.85 -2.39 -0.02 1.22 16 28 H 0.04 2.07 5.64 -2.39 -0.01 2.05 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 3.90 5.96 -2.39 -0.01 3.89 16 31 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 32 H 0.40 13.21 8.54 -92.71 -0.79 12.42 16 33 H 0.35 9.70 8.58 -89.69 -0.77 8.93 16 34 H 0.36 7.98 7.26 -89.69 -0.65 7.33 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 36 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 39 H 0.19 1.54 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -66.98 319.58 -0.56 -67.55 By element: Atomic # 1 Polarization: 42.61 SS G_CDS: -1.95 Total: 40.67 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 4.04 Total: -9.07 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -4.64 Total: -115.54 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.04 Total: -26.98 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Total: -66.98 -0.56 -67.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710073822.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.264 kcal (2) G-P(sol) polarization free energy of solvation -66.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds