Wall clock time and date at job start Mon Mar 30 2020 04:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 119.99628 * 2 1 4 4 H 1.48505 * 109.46906 * 269.99822 * 3 2 1 5 5 H 1.48498 * 109.47446 * 29.99732 * 3 2 1 6 6 H 1.48500 * 109.47148 * 150.00304 * 3 2 1 7 7 C 1.37871 * 120.00616 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00371 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99913 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47270 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47120 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47093 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00172 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99500 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00255 * 179.97438 * 13 12 11 16 16 H 1.09004 * 109.47246 * 320.00336 * 15 13 12 17 17 N 1.46896 * 109.47193 * 200.00533 * 15 13 12 18 18 C 1.52999 * 109.47115 * 80.00375 * 15 13 12 19 19 C 1.50699 * 109.46957 * 185.00149 * 18 15 13 20 20 C 1.34854 * 125.89093 * 84.99870 * 19 18 15 21 21 C 1.40891 * 107.41757 * 179.97438 * 20 19 18 22 22 C 1.34855 * 107.41598 * 0.02562 * 21 20 19 23 23 N 1.36335 * 125.88856 * 264.97180 * 19 18 15 24 24 H 0.96994 * 125.64064 * 359.97438 * 23 19 18 25 25 H 0.97000 * 120.00817 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46720 * 59.99893 * 9 7 2 27 27 H 1.08993 * 109.47118 * 300.00113 * 9 7 2 28 28 H 1.09001 * 109.46735 * 59.99763 * 10 9 7 29 29 H 1.09008 * 109.47074 * 300.00495 * 10 9 7 30 30 H 1.08998 * 109.46891 * 60.00342 * 11 10 9 31 31 H 1.09001 * 109.47255 * 299.99825 * 11 10 9 32 32 H 0.96997 * 119.99743 * 359.97438 * 12 11 10 33 33 H 1.00899 * 111.00332 * 176.04518 * 17 15 13 34 34 H 1.00901 * 110.99944 * 299.99789 * 17 15 13 35 35 H 1.08995 * 109.47343 * 64.99728 * 18 15 13 36 36 H 1.09003 * 109.46707 * 304.99752 * 18 15 13 37 37 H 1.07999 * 126.28918 * 359.71709 * 20 19 18 38 38 H 1.08003 * 126.29399 * 179.97438 * 21 20 19 39 39 H 1.07996 * 125.88993 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9870 -0.0001 12 7 2.4327 -6.1005 0.0005 13 6 1.9835 -7.3712 0.0006 14 8 0.7911 -7.5928 -0.0003 15 6 2.9629 -8.5166 0.0007 16 1 3.7974 -8.2812 -0.6599 17 7 2.2920 -9.7345 -0.4730 18 6 3.4847 -8.7414 1.4213 19 6 4.5537 -9.8034 1.4015 20 6 5.8615 -9.6040 1.1398 21 6 6.5042 -10.8548 1.2256 22 6 5.5646 -11.7710 1.5360 23 7 4.3655 -11.1314 1.6457 24 1 3.5186 -11.5518 1.8622 25 1 -0.4851 0.8400 0.0004 26 1 0.6249 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8902 28 1 2.8721 -3.6041 0.8905 29 1 2.8722 -3.6041 -0.8895 30 1 0.8543 -5.0445 -0.8904 31 1 0.8536 -5.0451 0.8897 32 1 3.3863 -5.9231 0.0008 33 1 2.9432 -10.5020 -0.5435 34 1 1.5141 -9.9740 0.1233 35 1 2.6645 -9.0632 2.0629 36 1 3.9035 -7.8114 1.8058 37 1 6.3293 -8.6597 0.9034 38 1 7.5560 -11.0451 1.0705 39 1 5.7331 -12.8287 1.6747 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710078486.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:06 Heat of formation + Delta-G solvation = -13.067265 kcal Electronic energy + Delta-G solvation = -19110.089665 eV Core-core repulsion = 16052.423576 eV Total energy + Delta-G solvation = -3057.666089 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.49982 -39.65764 -35.86819 -35.15712 -33.31050 -31.32086 -31.18160 -30.74570 -27.78853 -26.45152 -24.25578 -22.56866 -20.93550 -20.73192 -20.41634 -19.73821 -18.09093 -17.24793 -16.51187 -15.69460 -15.41728 -15.10138 -14.74923 -14.49270 -14.33843 -14.03995 -13.83739 -13.66012 -13.17759 -12.81614 -12.56881 -12.35201 -12.28256 -11.84337 -11.70775 -11.60579 -10.90324 -10.73283 -10.59888 -9.89496 -9.86820 -9.40508 -9.20303 -9.13395 -9.04726 -8.78366 -8.37389 -8.28854 -6.01889 -4.05091 1.88069 2.64237 2.80545 2.96147 3.30836 3.31163 3.37477 3.40435 4.30125 4.43920 4.49985 4.67702 4.79338 4.87790 4.98033 5.18522 5.22436 5.33930 5.42192 5.51158 5.71980 5.77590 5.93510 6.03609 6.15948 6.47307 6.59649 6.67144 6.73322 6.80830 6.84349 7.00069 7.14787 7.23148 7.63355 7.70102 7.75866 7.96794 8.36037 8.39928 9.01656 9.59217 11.09415 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.033472 B = 0.002904 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.309181 B = 9639.996107 C =10303.985486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.117 3.883 12 N -0.724 5.724 13 C 0.514 3.486 14 O -0.535 6.535 15 C 0.082 3.918 16 H 0.106 0.894 17 N -0.825 5.825 18 C -0.082 4.082 19 C 0.013 3.987 20 C -0.188 4.188 21 C -0.199 4.199 22 C -0.015 4.015 23 N -0.559 5.559 24 H 0.411 0.589 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.398 0.602 33 H 0.344 0.656 34 H 0.348 0.652 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.126 -23.321 3.408 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.375 5.375 13 C 0.299 3.701 14 O -0.411 6.411 15 C -0.034 4.034 16 H 0.124 0.876 17 N -0.356 5.356 18 C -0.122 4.122 19 C -0.099 4.099 20 C -0.213 4.213 21 C -0.224 4.224 22 C -0.146 4.146 23 N -0.154 5.154 24 H 0.247 0.753 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.232 0.768 33 H 0.158 0.842 34 H 0.162 0.838 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.795 -22.999 2.771 25.151 hybrid contribution 0.908 0.417 1.040 1.443 sum 10.703 -22.582 3.812 25.279 Atomic orbital electron populations 1.69960 1.06072 1.26702 1.50576 1.25029 0.94854 0.99316 0.95277 0.86583 0.79799 0.83425 0.78112 1.20644 1.21219 1.19879 1.21206 0.92999 0.90939 1.50918 0.92626 1.19030 0.93859 0.90875 0.97647 1.21888 0.99759 0.93308 1.00909 1.21651 0.91874 0.85087 1.01988 1.46199 1.10846 1.05825 1.74663 1.20329 0.89407 0.83859 0.76524 1.90690 1.16724 1.84629 1.49025 1.21424 0.95942 0.91128 0.94922 0.87563 1.58464 1.13255 1.05692 1.58207 1.20905 0.96135 0.97434 0.97764 1.20163 0.96153 0.84117 1.09489 1.20769 0.92470 0.98764 1.09299 1.20938 0.99172 0.92890 1.09381 1.21843 0.84651 0.98452 1.09620 1.42042 1.09850 1.07245 1.56285 0.75292 0.92919 0.96278 0.96297 0.92710 0.92666 0.91718 0.91828 0.76787 0.84229 0.83760 0.90659 0.88464 0.84540 0.84720 0.81977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 11 C 0.12 2.03 5.67 -4.04 -0.02 2.01 16 12 N -0.72 -9.98 5.56 -60.30 -0.33 -10.31 16 13 C 0.51 7.32 7.08 -10.99 -0.08 7.24 16 14 O -0.53 -9.84 16.25 5.56 0.09 -9.75 16 15 C 0.08 0.83 3.20 -68.87 -0.22 0.61 16 16 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 17 N -0.82 -8.29 8.95 -5.66 -0.05 -8.34 16 18 C -0.08 -0.68 5.38 -27.88 -0.15 -0.83 16 19 C 0.01 0.11 5.63 -81.79 -0.46 -0.35 16 20 C -0.19 -1.69 10.77 -39.78 -0.43 -2.12 16 21 C -0.20 -1.65 10.86 -39.78 -0.43 -2.08 16 22 C -0.01 -0.10 11.94 -16.74 -0.20 -0.30 16 23 N -0.56 -3.66 5.91 -9.12 -0.05 -3.71 16 24 H 0.41 1.78 8.96 -40.82 -0.37 1.42 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.40 4.33 8.47 -40.82 -0.35 3.99 16 33 H 0.34 2.84 8.15 -39.29 -0.32 2.52 16 34 H 0.35 3.49 8.58 -39.29 -0.34 3.15 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 333.82 15.07 5.03 5.03 Total: -1.00 -33.67 333.82 -8.27 -41.94 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.98 Total: 6.01 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -2.68 Total: -11.18 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.30 Total: -48.48 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.67 -8.27 -41.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710078486.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.870 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds