Wall clock time and date at job start Mon Mar 30 2020 04:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 119.99628 * 2 1 4 4 H 1.48505 * 109.46906 * 269.99822 * 3 2 1 5 5 H 1.48498 * 109.47446 * 29.99732 * 3 2 1 6 6 H 1.48500 * 109.47148 * 150.00304 * 3 2 1 7 7 C 1.37871 * 120.00616 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00371 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99913 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47270 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47120 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47093 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00172 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99500 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00255 * 179.97438 * 13 12 11 16 16 H 1.09004 * 109.47246 * 320.00336 * 15 13 12 17 17 N 1.46896 * 109.47193 * 200.00533 * 15 13 12 18 18 C 1.52999 * 109.47115 * 80.00375 * 15 13 12 19 19 C 1.50699 * 109.46957 * 185.00149 * 18 15 13 20 20 C 1.34854 * 125.89093 * 84.99870 * 19 18 15 21 21 C 1.40891 * 107.41757 * 179.97438 * 20 19 18 22 22 C 1.34855 * 107.41598 * 0.02562 * 21 20 19 23 23 N 1.36335 * 125.88856 * 264.97180 * 19 18 15 24 24 H 0.96994 * 125.64064 * 359.97438 * 23 19 18 25 25 H 0.97000 * 120.00817 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46720 * 59.99893 * 9 7 2 27 27 H 1.08993 * 109.47118 * 300.00113 * 9 7 2 28 28 H 1.09001 * 109.46735 * 59.99763 * 10 9 7 29 29 H 1.09008 * 109.47074 * 300.00495 * 10 9 7 30 30 H 1.08998 * 109.46891 * 60.00342 * 11 10 9 31 31 H 1.09001 * 109.47255 * 299.99825 * 11 10 9 32 32 H 0.96997 * 119.99743 * 359.97438 * 12 11 10 33 33 H 1.00899 * 111.00332 * 176.04518 * 17 15 13 34 34 H 1.00901 * 110.99944 * 299.99789 * 17 15 13 35 35 H 1.08995 * 109.47343 * 64.99728 * 18 15 13 36 36 H 1.09003 * 109.46707 * 304.99752 * 18 15 13 37 37 H 1.07999 * 126.28918 * 359.71709 * 20 19 18 38 38 H 1.08003 * 126.29399 * 179.97438 * 21 20 19 39 39 H 1.07996 * 125.88993 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9870 -0.0001 12 7 2.4327 -6.1005 0.0005 13 6 1.9835 -7.3712 0.0006 14 8 0.7911 -7.5928 -0.0003 15 6 2.9629 -8.5166 0.0007 16 1 3.7974 -8.2812 -0.6599 17 7 2.2920 -9.7345 -0.4730 18 6 3.4847 -8.7414 1.4213 19 6 4.5537 -9.8034 1.4015 20 6 5.8615 -9.6040 1.1398 21 6 6.5042 -10.8548 1.2256 22 6 5.5646 -11.7710 1.5360 23 7 4.3655 -11.1314 1.6457 24 1 3.5186 -11.5518 1.8622 25 1 -0.4851 0.8400 0.0004 26 1 0.6249 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8902 28 1 2.8721 -3.6041 0.8905 29 1 2.8722 -3.6041 -0.8895 30 1 0.8543 -5.0445 -0.8904 31 1 0.8536 -5.0451 0.8897 32 1 3.3863 -5.9231 0.0008 33 1 2.9432 -10.5020 -0.5435 34 1 1.5141 -9.9740 0.1233 35 1 2.6645 -9.0632 2.0629 36 1 3.9035 -7.8114 1.8058 37 1 6.3293 -8.6597 0.9034 38 1 7.5560 -11.0451 1.0705 39 1 5.7331 -12.8287 1.6747 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710078486.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:06 Heat of formation + Delta-G solvation = -38.407746 kcal Electronic energy + Delta-G solvation = -19111.188510 eV Core-core repulsion = 16052.423576 eV Total energy + Delta-G solvation = -3058.764935 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.07804 -40.80537 -37.13680 -36.29668 -35.18754 -33.01286 -31.82224 -31.42778 -29.13013 -27.68092 -25.55307 -24.03016 -22.30529 -21.47338 -21.17906 -20.83429 -18.87234 -18.53459 -18.07561 -17.01745 -16.64627 -16.46154 -16.07456 -15.71206 -15.23736 -15.05375 -14.67664 -14.37325 -14.27788 -14.05562 -13.74842 -13.65487 -13.46917 -13.13976 -12.97304 -12.73458 -12.54310 -12.38870 -12.34388 -11.66242 -11.57540 -11.23436 -10.83663 -10.55025 -10.09752 -9.88513 -9.71547 -8.89123 -8.19050 -6.30571 1.27461 1.42358 1.43637 1.54620 1.63524 2.09205 2.17364 2.42791 2.50192 3.14807 3.54058 3.67934 3.95715 4.01113 4.13391 4.22146 4.23954 4.44901 4.54737 4.56581 4.62061 4.79166 4.91125 4.95435 5.00356 5.18090 5.38267 5.44088 5.45955 5.53697 5.71596 5.84924 5.97962 6.09881 6.22793 6.23423 6.43536 6.59341 6.77212 6.87261 7.25754 7.39200 8.93113 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.033472 B = 0.002904 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.309181 B = 9639.996107 C =10303.985486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.102 4.102 11 C 0.130 3.870 12 N -0.712 5.712 13 C 0.512 3.488 14 O -0.579 6.579 15 C 0.096 3.904 16 H 0.120 0.880 17 N -0.833 5.833 18 C -0.071 4.071 19 C 0.005 3.995 20 C -0.206 4.206 21 C -0.225 4.225 22 C -0.007 4.007 23 N -0.552 5.552 24 H 0.422 0.578 25 H 0.263 0.737 26 H -0.010 1.010 27 H -0.008 1.008 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.416 0.584 33 H 0.355 0.645 34 H 0.348 0.652 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.358 -24.158 3.671 27.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.139 4.139 11 C 0.006 3.994 12 N -0.365 5.365 13 C 0.299 3.701 14 O -0.458 6.458 15 C -0.020 4.020 16 H 0.138 0.862 17 N -0.366 5.366 18 C -0.112 4.112 19 C -0.108 4.108 20 C -0.231 4.231 21 C -0.250 4.250 22 C -0.139 4.139 23 N -0.149 5.149 24 H 0.260 0.740 25 H 0.072 0.928 26 H 0.009 0.991 27 H 0.011 0.989 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.253 0.747 33 H 0.171 0.829 34 H 0.162 0.838 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.156 0.844 38 H 0.160 0.840 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 12.074 -23.861 3.036 26.914 hybrid contribution 0.196 0.612 0.955 1.151 sum 12.270 -23.249 3.991 26.590 Atomic orbital electron populations 1.70108 1.07971 1.27793 1.51766 1.26028 0.95739 1.03587 0.94809 0.85417 0.78720 0.78275 0.78447 1.19863 1.21080 1.18329 1.21693 0.93782 0.91999 1.50352 0.91464 1.18948 0.94475 0.93052 0.95002 1.21595 0.98401 0.91723 1.02219 1.21218 0.92001 0.85634 1.00558 1.45970 1.11200 1.04984 1.74302 1.21078 0.89499 0.84532 0.75005 1.90674 1.18933 1.85259 1.50975 1.21307 0.94725 0.89460 0.96505 0.86227 1.58436 1.13702 1.06060 1.58438 1.20762 0.96169 0.97936 0.96321 1.20039 0.95743 0.84717 1.10300 1.20991 0.93025 0.99346 1.09751 1.21194 1.00058 0.93125 1.10607 1.22312 0.84196 0.99561 1.07798 1.42070 1.10462 1.06738 1.55580 0.74018 0.92826 0.99127 0.98940 0.91134 0.91393 0.93556 0.93141 0.74711 0.82914 0.83780 0.90700 0.88009 0.84359 0.84042 0.79232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.35 13.29 21.44 0.28 -57.07 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 7 C -0.54 -30.09 9.11 25.60 0.23 -29.86 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.10 -3.86 5.27 30.59 0.16 -3.70 16 11 C 0.13 4.55 5.67 86.38 0.49 5.04 16 12 N -0.71 -18.82 5.56 -463.06 -2.57 -21.39 16 13 C 0.51 14.16 7.08 87.66 0.62 14.78 16 14 O -0.58 -21.42 16.25 -3.04 -0.05 -21.47 16 15 C 0.10 1.78 3.20 44.17 0.14 1.92 16 16 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 17 N -0.83 -15.55 8.95 -171.81 -1.54 -17.09 16 18 C -0.07 -1.07 5.38 29.85 0.16 -0.91 16 19 C 0.00 0.07 5.63 41.08 0.23 0.30 16 20 C -0.21 -3.36 10.77 22.14 0.24 -3.12 16 21 C -0.23 -3.33 10.86 22.14 0.24 -3.09 16 22 C -0.01 -0.08 11.94 83.21 0.99 0.91 16 23 N -0.55 -5.98 5.91 -182.77 -1.08 -7.06 16 24 H 0.42 2.67 8.96 -92.71 -0.83 1.84 16 25 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 26 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 27 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.42 8.12 8.47 -92.71 -0.79 7.34 16 33 H 0.36 5.18 8.15 -89.69 -0.73 4.45 16 34 H 0.35 6.62 8.58 -89.69 -0.77 5.85 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 39 H 0.19 0.93 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -73.25 333.82 -0.84 -74.09 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -2.04 Total: 20.36 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 4.12 Total: -16.16 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -4.91 Total: -102.61 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.05 Total: -21.47 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -73.25 -0.84 -74.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710078486.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.683 kcal (2) G-P(sol) polarization free energy of solvation -73.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds