Wall clock time and date at job start Mon Mar 30 2020 04:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46797 * 124.73020 * 3 2 1 5 5 C 1.37097 * 120.00186 * 263.74034 * 4 3 2 6 6 H 1.08005 * 120.00118 * 194.11865 * 5 4 3 7 7 C 1.38949 * 119.99888 * 14.11427 * 5 4 3 8 8 N 1.31409 * 119.99985 * 11.49337 * 7 5 4 9 9 Si 1.86801 * 119.99924 * 191.49486 * 7 5 4 10 10 H 1.48502 * 109.46942 * 90.00191 * 9 7 5 11 11 H 1.48506 * 109.46940 * 209.99665 * 9 7 5 12 12 H 1.48496 * 109.47375 * 329.99895 * 9 7 5 13 13 C 1.34777 * 120.00332 * 83.74441 * 4 3 2 14 14 O 1.21294 * 119.99694 * 3.67402 * 13 4 3 15 15 C 1.50693 * 120.00666 * 183.67861 * 13 4 3 16 16 H 1.09006 * 109.46823 * 307.65087 * 15 13 4 17 17 C 1.53001 * 109.47177 * 67.64290 * 15 13 4 18 18 C 1.52996 * 109.47377 * 180.02562 * 17 15 13 19 19 C 1.53001 * 109.47050 * 300.00567 * 18 17 15 20 20 C 1.52999 * 109.47582 * 59.99884 * 19 18 17 21 21 H 1.09006 * 109.46859 * 59.99705 * 20 19 18 22 22 C 1.53000 * 109.47219 * 180.02562 * 20 19 18 23 23 N 1.46899 * 109.46867 * 294.99825 * 22 20 19 24 24 C 1.52996 * 109.47023 * 300.00133 * 20 19 18 25 25 H 1.08999 * 109.47188 * 4.72691 * 3 2 1 26 26 H 1.09000 * 109.46792 * 244.72641 * 3 2 1 27 27 H 0.96998 * 120.00315 * 180.02562 * 8 7 5 28 28 H 1.09006 * 109.46593 * 60.00657 * 17 15 13 29 29 H 1.09000 * 109.47503 * 300.00684 * 17 15 13 30 30 H 1.09004 * 109.47436 * 180.02562 * 18 17 15 31 31 H 1.09001 * 109.47149 * 60.00148 * 18 17 15 32 32 H 1.09010 * 109.47269 * 180.02562 * 19 18 17 33 33 H 1.09000 * 109.47468 * 299.99451 * 19 18 17 34 34 H 1.08999 * 109.47285 * 54.99922 * 22 20 19 35 35 H 1.09003 * 109.46552 * 174.99902 * 22 20 19 36 36 H 1.00898 * 111.00415 * 56.04563 * 23 22 20 37 37 H 1.00901 * 110.99444 * 180.02562 * 23 22 20 38 38 H 1.08994 * 109.47473 * 179.97438 * 24 20 19 39 39 H 1.09001 * 109.47149 * 299.99961 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0960 0.7877 -1.1351 5 6 3.4468 0.1616 -2.3032 6 1 4.0136 0.6944 -3.0524 7 6 3.0731 -1.1585 -2.5232 8 7 2.2008 -1.7357 -1.7278 9 14 3.8109 -2.1127 -3.9496 10 1 5.0485 -2.7986 -3.4988 11 1 2.8323 -3.1217 -4.4290 12 1 4.1383 -1.1765 -5.0548 13 6 3.2001 2.1275 -1.0312 14 8 2.9536 2.6749 0.0228 15 6 3.6225 2.9453 -2.2243 16 1 4.5489 2.5409 -2.6324 17 6 2.5285 2.8918 -3.2925 18 6 2.9577 3.7217 -4.5041 19 6 3.1809 5.1732 -4.0749 20 6 4.2750 5.2267 -3.0067 21 1 5.2012 4.8219 -3.4147 22 6 4.4977 6.6782 -2.5771 23 7 5.0239 7.4493 -3.7113 24 6 3.8458 4.3969 -1.7951 25 1 2.9719 -1.0233 -0.0847 26 1 2.9712 0.4396 0.9293 27 1 1.9402 -2.6574 -1.8811 28 1 1.6022 3.2963 -2.8844 29 1 2.3698 1.8578 -3.5986 30 1 2.1781 3.6839 -5.2650 31 1 3.8839 3.3169 -4.9121 32 1 3.4863 5.7646 -4.9382 33 1 2.2547 5.5780 -3.6670 34 1 3.5513 7.1102 -2.2519 35 1 5.2124 6.7079 -1.7546 36 1 4.4097 7.3839 -4.5091 37 1 5.1800 8.4120 -3.4526 38 1 4.6254 4.4346 -1.0343 39 1 2.9196 4.8016 -1.3871 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713886596.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:17 Heat of formation + Delta-G solvation = -22.200180 kcal Electronic energy + Delta-G solvation = -20864.388661 eV Core-core repulsion = 17806.326539 eV Total energy + Delta-G solvation = -3058.062122 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.59318 -37.79993 -35.58654 -34.51831 -34.29158 -31.64677 -30.59145 -30.16927 -27.44074 -24.96831 -24.50318 -22.50311 -21.10375 -19.57212 -19.10971 -17.69592 -16.47667 -16.10362 -15.82063 -15.00159 -14.69181 -14.39338 -14.28364 -14.03279 -13.59244 -13.25403 -13.03711 -12.68938 -12.53769 -12.19516 -11.82755 -11.62813 -11.44535 -11.28549 -11.21183 -11.16413 -10.86562 -10.70882 -10.54233 -10.49404 -10.27503 -10.10830 -9.93265 -9.67350 -9.32281 -8.75372 -8.49576 -8.12172 -6.50766 -4.10818 3.03399 3.14266 3.16861 3.59263 3.83204 4.05436 4.21057 4.49537 4.81386 4.86381 4.94918 5.01268 5.20241 5.43865 5.54269 5.55182 5.66254 5.75014 5.82369 5.89320 5.96147 5.98000 6.05535 6.22037 6.31812 6.42322 6.46605 6.59255 6.62066 6.68860 6.87149 6.91498 6.94795 7.08068 7.26307 7.34613 7.49302 8.19127 8.88779 8.91566 9.27441 9.67705 10.49139 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.020568 B = 0.006387 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.983849 B = 4383.062809 C = 5199.132832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.260 3.740 3 C 0.220 3.780 4 N -0.444 5.444 5 C -0.327 4.327 6 H 0.108 0.892 7 C 0.033 3.967 8 N -0.879 5.879 9 Si 0.928 3.072 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.468 3.532 14 O -0.599 6.599 15 C -0.082 4.082 16 H 0.086 0.914 17 C -0.112 4.112 18 C -0.114 4.114 19 C -0.114 4.114 20 C -0.086 4.086 21 H 0.077 0.923 22 C 0.066 3.934 23 N -0.853 5.853 24 C -0.090 4.090 25 H 0.146 0.854 26 H 0.081 0.919 27 H 0.274 0.726 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.025 0.975 35 H 0.071 0.929 36 H 0.339 0.661 37 H 0.336 0.664 38 H 0.063 0.937 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.016 9.173 -5.021 12.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.058 4.058 3 C 0.093 3.907 4 N -0.163 5.163 5 C -0.454 4.454 6 H 0.126 0.874 7 C -0.170 4.170 8 N -0.519 5.519 9 Si 0.754 3.246 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.258 3.742 14 O -0.484 6.484 15 C -0.103 4.103 16 H 0.104 0.896 17 C -0.149 4.149 18 C -0.152 4.152 19 C -0.152 4.152 20 C -0.105 4.105 21 H 0.096 0.904 22 C -0.065 4.065 23 N -0.382 5.382 24 C -0.129 4.129 25 H 0.163 0.837 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.089 0.911 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.082 0.918 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.748 8.721 -4.452 10.882 hybrid contribution -0.241 -0.169 -0.751 0.807 sum 4.507 8.551 -5.204 10.978 Atomic orbital electron populations 1.80861 1.13867 1.11828 1.10721 1.29462 0.95456 0.90119 0.90716 1.18910 0.81154 1.00893 0.89709 1.43649 1.56146 1.04125 1.12380 1.19781 1.33580 0.95932 0.96138 0.87429 1.25268 0.95385 0.97528 0.98847 1.69853 1.29219 1.14526 1.38265 0.85896 0.78659 0.79465 0.80567 1.20090 1.20942 1.19329 1.20317 0.82028 0.82300 0.89604 1.90550 1.56061 1.71267 1.30510 1.20937 1.00042 0.94497 0.94825 0.89556 1.21512 0.97207 1.02047 0.94182 1.21502 1.01205 0.94726 0.97748 1.21611 0.98375 0.97261 0.97951 1.21204 0.99048 0.94038 0.96178 0.90433 1.21846 0.97657 0.93849 0.93152 1.58773 1.54530 1.16301 1.08638 1.21319 1.01881 0.93636 0.96049 0.83682 0.90155 0.91504 0.92739 0.89243 0.92363 0.91893 0.92539 0.92545 0.95668 0.91062 0.84822 0.85185 0.91827 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.77 18.54 42.15 0.78 -11.99 16 2 C 0.26 6.39 14.04 -20.76 -0.29 6.10 16 3 C 0.22 4.92 5.09 -6.83 -0.03 4.88 16 4 N -0.44 -10.14 2.61 -117.94 -0.31 -10.44 16 5 C -0.33 -7.34 7.72 -14.93 -0.12 -7.46 16 6 H 0.11 2.26 5.76 -52.48 -0.30 1.96 16 7 C 0.03 0.75 5.17 -17.47 -0.09 0.66 16 8 N -0.88 -21.18 8.92 55.50 0.50 -20.68 16 9 Si 0.93 18.08 29.57 -169.99 -5.03 13.06 16 10 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 11 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 12 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 13 C 0.47 10.42 6.87 -10.99 -0.08 10.35 16 14 O -0.60 -14.74 15.64 5.55 0.09 -14.65 16 15 C -0.08 -1.48 1.69 -91.77 -0.15 -1.64 16 16 H 0.09 1.51 7.16 -51.93 -0.37 1.14 16 17 C -0.11 -1.94 4.93 -26.73 -0.13 -2.07 16 18 C -0.11 -1.58 5.92 -26.73 -0.16 -1.74 16 19 C -0.11 -1.42 4.97 -26.73 -0.13 -1.55 16 20 C -0.09 -1.12 2.40 -90.62 -0.22 -1.34 16 21 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 22 C 0.07 0.76 6.24 -3.82 -0.02 0.73 16 23 N -0.85 -8.54 9.62 -10.37 -0.10 -8.64 16 24 C -0.09 -1.46 3.81 -26.73 -0.10 -1.56 16 25 H 0.15 3.23 5.79 -51.93 -0.30 2.93 16 26 H 0.08 1.67 7.57 -51.93 -0.39 1.27 16 27 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.09 1.74 6.12 -51.93 -0.32 1.42 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.61 6.68 -51.92 -0.35 0.26 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.34 3.08 7.25 -39.29 -0.28 2.79 16 37 H 0.34 2.74 9.08 -39.29 -0.36 2.38 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.13 8.02 -51.93 -0.42 0.71 16 LS Contribution 311.92 15.07 4.70 4.70 Total: -1.00 -27.63 311.92 -6.50 -34.13 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -5.61 Total: 9.15 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -1.53 Total: 5.37 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.87 Total: -51.75 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.09 Total: -14.65 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.63 -6.50 -34.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713886596.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.934 kcal (2) G-P(sol) polarization free energy of solvation -27.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds