Wall clock time and date at job start Mon Mar 30 2020 04:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46797 * 124.73020 * 3 2 1 5 5 C 1.37097 * 120.00186 * 263.74034 * 4 3 2 6 6 H 1.08005 * 120.00118 * 194.11865 * 5 4 3 7 7 C 1.38949 * 119.99888 * 14.11427 * 5 4 3 8 8 N 1.31409 * 119.99985 * 11.49337 * 7 5 4 9 9 Si 1.86801 * 119.99924 * 191.49486 * 7 5 4 10 10 H 1.48502 * 109.46942 * 90.00191 * 9 7 5 11 11 H 1.48506 * 109.46940 * 209.99665 * 9 7 5 12 12 H 1.48496 * 109.47375 * 329.99895 * 9 7 5 13 13 C 1.34777 * 120.00332 * 83.74441 * 4 3 2 14 14 O 1.21294 * 119.99694 * 3.67402 * 13 4 3 15 15 C 1.50693 * 120.00666 * 183.67861 * 13 4 3 16 16 H 1.09006 * 109.46823 * 307.65087 * 15 13 4 17 17 C 1.53001 * 109.47177 * 67.64290 * 15 13 4 18 18 C 1.52996 * 109.47377 * 180.02562 * 17 15 13 19 19 C 1.53001 * 109.47050 * 300.00567 * 18 17 15 20 20 C 1.52999 * 109.47582 * 59.99884 * 19 18 17 21 21 H 1.09006 * 109.46859 * 59.99705 * 20 19 18 22 22 C 1.53000 * 109.47219 * 180.02562 * 20 19 18 23 23 N 1.46899 * 109.46867 * 294.99825 * 22 20 19 24 24 C 1.52996 * 109.47023 * 300.00133 * 20 19 18 25 25 H 1.08999 * 109.47188 * 4.72691 * 3 2 1 26 26 H 1.09000 * 109.46792 * 244.72641 * 3 2 1 27 27 H 0.96998 * 120.00315 * 180.02562 * 8 7 5 28 28 H 1.09006 * 109.46593 * 60.00657 * 17 15 13 29 29 H 1.09000 * 109.47503 * 300.00684 * 17 15 13 30 30 H 1.09004 * 109.47436 * 180.02562 * 18 17 15 31 31 H 1.09001 * 109.47149 * 60.00148 * 18 17 15 32 32 H 1.09010 * 109.47269 * 180.02562 * 19 18 17 33 33 H 1.09000 * 109.47468 * 299.99451 * 19 18 17 34 34 H 1.08999 * 109.47285 * 54.99922 * 22 20 19 35 35 H 1.09003 * 109.46552 * 174.99902 * 22 20 19 36 36 H 1.00898 * 111.00415 * 56.04563 * 23 22 20 37 37 H 1.00901 * 110.99444 * 180.02562 * 23 22 20 38 38 H 1.08994 * 109.47473 * 179.97438 * 24 20 19 39 39 H 1.09001 * 109.47149 * 299.99961 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0960 0.7877 -1.1351 5 6 3.4468 0.1616 -2.3032 6 1 4.0136 0.6944 -3.0524 7 6 3.0731 -1.1585 -2.5232 8 7 2.2008 -1.7357 -1.7278 9 14 3.8109 -2.1127 -3.9496 10 1 5.0485 -2.7986 -3.4988 11 1 2.8323 -3.1217 -4.4290 12 1 4.1383 -1.1765 -5.0548 13 6 3.2001 2.1275 -1.0312 14 8 2.9536 2.6749 0.0228 15 6 3.6225 2.9453 -2.2243 16 1 4.5489 2.5409 -2.6324 17 6 2.5285 2.8918 -3.2925 18 6 2.9577 3.7217 -4.5041 19 6 3.1809 5.1732 -4.0749 20 6 4.2750 5.2267 -3.0067 21 1 5.2012 4.8219 -3.4147 22 6 4.4977 6.6782 -2.5771 23 7 5.0239 7.4493 -3.7113 24 6 3.8458 4.3969 -1.7951 25 1 2.9719 -1.0233 -0.0847 26 1 2.9712 0.4396 0.9293 27 1 1.9402 -2.6574 -1.8811 28 1 1.6022 3.2963 -2.8844 29 1 2.3698 1.8578 -3.5986 30 1 2.1781 3.6839 -5.2650 31 1 3.8839 3.3169 -4.9121 32 1 3.4863 5.7646 -4.9382 33 1 2.2547 5.5780 -3.6670 34 1 3.5513 7.1102 -2.2519 35 1 5.2124 6.7079 -1.7546 36 1 4.4097 7.3839 -4.5091 37 1 5.1800 8.4120 -3.4526 38 1 4.6254 4.4346 -1.0343 39 1 2.9196 4.8016 -1.3871 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713886596.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:16 Heat of formation + Delta-G solvation = -39.137512 kcal Electronic energy + Delta-G solvation = -20865.123119 eV Core-core repulsion = 17806.326539 eV Total energy + Delta-G solvation = -3058.796580 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17236 -39.17347 -37.44091 -36.38899 -35.41344 -33.42872 -31.89429 -31.32611 -29.16455 -26.69476 -25.59180 -23.87608 -22.32971 -20.92038 -20.62915 -19.44652 -18.09362 -17.88856 -16.82974 -16.32687 -16.13807 -15.90591 -15.61950 -15.52260 -14.89799 -14.75994 -14.41783 -14.26682 -13.90317 -13.68569 -13.52915 -13.27305 -13.06276 -12.91924 -12.70261 -12.44558 -12.39374 -12.11808 -12.07254 -11.92862 -11.83955 -11.36077 -11.28073 -11.10568 -10.84727 -10.24028 -9.94227 -9.53910 -8.26849 -5.91709 1.46727 1.55743 1.64879 1.78910 2.04134 2.23499 2.37655 3.06357 3.11629 3.64565 3.69515 3.85147 3.90310 4.00628 4.28092 4.39109 4.44600 4.50373 4.61968 4.63701 4.70015 4.75347 4.83516 4.90246 5.03077 5.08942 5.18862 5.26936 5.34582 5.37069 5.46094 5.49179 5.54398 5.64533 5.73082 6.29616 6.40579 6.67922 6.93293 7.11798 7.49876 7.89781 8.72934 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.020568 B = 0.006387 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.983849 B = 4383.062809 C = 5199.132832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C 0.268 3.732 3 C 0.220 3.780 4 N -0.452 5.452 5 C -0.332 4.332 6 H 0.122 0.878 7 C -0.005 4.005 8 N -0.907 5.907 9 Si 0.990 3.010 10 H -0.270 1.270 11 H -0.296 1.296 12 H -0.256 1.256 13 C 0.456 3.544 14 O -0.628 6.628 15 C -0.077 4.077 16 H 0.098 0.902 17 C -0.105 4.105 18 C -0.108 4.108 19 C -0.110 4.110 20 C -0.077 4.077 21 H 0.079 0.921 22 C 0.070 3.930 23 N -0.854 5.854 24 C -0.083 4.083 25 H 0.149 0.851 26 H 0.094 0.906 27 H 0.271 0.729 28 H 0.033 0.967 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.025 0.975 35 H 0.067 0.933 36 H 0.346 0.654 37 H 0.349 0.651 38 H 0.056 0.944 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.494 10.219 -7.022 14.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.204 5.204 2 C -0.049 4.049 3 C 0.093 3.907 4 N -0.171 5.171 5 C -0.459 4.459 6 H 0.140 0.860 7 C -0.205 4.205 8 N -0.548 5.548 9 Si 0.814 3.186 10 H -0.195 1.195 11 H -0.223 1.223 12 H -0.180 1.180 13 C 0.247 3.753 14 O -0.515 6.515 15 C -0.098 4.098 16 H 0.116 0.884 17 C -0.144 4.144 18 C -0.146 4.146 19 C -0.147 4.147 20 C -0.096 4.096 21 H 0.098 0.902 22 C -0.061 4.061 23 N -0.385 5.385 24 C -0.122 4.122 25 H 0.166 0.834 26 H 0.112 0.888 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.075 0.925 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.242 9.790 -6.465 13.289 hybrid contribution -0.723 -0.489 -0.073 0.876 sum 5.519 9.301 -6.538 12.638 Atomic orbital electron populations 1.80841 1.14785 1.12932 1.11797 1.29950 0.95954 0.89184 0.89806 1.19041 0.79879 1.01272 0.90513 1.43891 1.55991 1.04568 1.12667 1.20129 1.33441 0.96119 0.96205 0.86019 1.26010 0.95443 0.98141 1.00910 1.69961 1.30444 1.14544 1.39839 0.84937 0.77532 0.77925 0.78163 1.19534 1.22293 1.18008 1.21132 0.81363 0.82333 0.90452 1.90521 1.57277 1.71753 1.31959 1.20977 1.00515 0.95011 0.93291 0.88429 1.21433 0.96151 1.01377 0.95397 1.21476 1.02028 0.94935 0.96124 1.21587 0.97951 0.96577 0.98593 1.21107 0.99202 0.94490 0.94790 0.90230 1.21706 0.97691 0.93009 0.93648 1.58723 1.54460 1.17106 1.08246 1.21246 1.00768 0.92766 0.97387 0.83439 0.88792 0.91871 0.94771 0.91428 0.91085 0.90808 0.89838 0.92981 0.95697 0.91410 0.84017 0.83821 0.92531 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -27.58 18.54 20.01 0.37 -27.21 16 2 C 0.27 13.39 14.04 89.44 1.26 14.64 16 3 C 0.22 9.92 5.09 84.58 0.43 10.35 16 4 N -0.45 -20.70 2.61 -645.42 -1.68 -22.39 16 5 C -0.33 -14.67 7.72 84.04 0.65 -14.02 16 6 H 0.12 4.93 5.76 -2.91 -0.02 4.91 16 7 C 0.00 -0.21 5.17 84.93 0.44 0.22 16 8 N -0.91 -43.83 8.92 21.66 0.19 -43.63 16 9 Si 0.99 36.13 29.57 68.60 2.03 38.16 16 10 H -0.27 -9.59 7.11 99.48 0.71 -8.89 16 11 H -0.30 -11.40 7.11 99.48 0.71 -10.69 16 12 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 13 C 0.46 20.43 6.87 87.65 0.60 21.03 16 14 O -0.63 -31.38 15.64 -3.07 -0.05 -31.43 16 15 C -0.08 -2.74 1.69 -11.54 -0.02 -2.76 16 16 H 0.10 3.25 7.16 -2.38 -0.02 3.24 16 17 C -0.11 -3.59 4.93 30.59 0.15 -3.44 16 18 C -0.11 -2.71 5.92 30.59 0.18 -2.53 16 19 C -0.11 -2.40 4.97 30.59 0.15 -2.25 16 20 C -0.08 -1.84 2.40 -10.80 -0.03 -1.87 16 21 H 0.08 1.92 8.14 -2.38 -0.02 1.91 16 22 C 0.07 1.47 6.24 86.30 0.54 2.00 16 23 N -0.85 -14.48 9.62 -186.72 -1.80 -16.27 16 24 C -0.08 -2.62 3.81 30.59 0.12 -2.50 16 25 H 0.15 6.64 5.79 -2.39 -0.01 6.62 16 26 H 0.09 3.94 7.57 -2.39 -0.02 3.93 16 27 H 0.27 12.79 8.31 -92.71 -0.77 12.02 16 28 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.07 2.59 6.12 -2.39 -0.01 2.57 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 1.44 6.68 -2.38 -0.02 1.42 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.35 5.05 7.25 -89.70 -0.65 4.40 16 37 H 0.35 4.66 9.08 -89.69 -0.81 3.84 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.04 1.60 8.02 -2.39 -0.02 1.58 16 Total: -1.00 -58.74 311.92 3.15 -55.59 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: -0.38 Total: 28.31 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 4.47 Total: 18.88 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -2.91 Total: -109.50 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.05 Total: -31.43 kcal Atomic # 14 Polarization: 36.13 SS G_CDS: 2.03 Total: 38.16 kcal Total: -58.74 3.15 -55.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713886596.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.449 kcal (2) G-P(sol) polarization free energy of solvation -58.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds