Wall clock time and date at job start Mon Mar 30 2020 04:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47426 * 290.81923 * 3 2 1 5 5 C 1.37108 * 119.99884 * 268.71926 * 4 3 2 6 6 H 1.08000 * 119.99480 * 201.98753 * 5 4 3 7 7 C 1.38948 * 119.99893 * 21.98004 * 5 4 3 8 8 N 1.31407 * 119.99984 * 23.97253 * 7 5 4 9 9 Si 1.86797 * 119.99740 * 203.96976 * 7 5 4 10 10 H 1.48503 * 109.47231 * 90.00209 * 9 7 5 11 11 H 1.48509 * 109.47052 * 210.00257 * 9 7 5 12 12 H 1.48500 * 109.47415 * 330.00131 * 9 7 5 13 13 C 1.34769 * 120.00072 * 88.70961 * 4 3 2 14 14 O 1.21294 * 120.00212 * 185.12862 * 13 4 3 15 15 C 1.50700 * 119.99996 * 5.13117 * 13 4 3 16 16 H 1.08995 * 109.47271 * 325.59912 * 15 13 4 17 17 C 1.53006 * 109.46948 * 205.59913 * 15 13 4 18 18 C 1.53003 * 109.47071 * 179.97438 * 17 15 13 19 19 C 1.53005 * 109.46508 * 60.00438 * 18 17 15 20 20 C 1.53006 * 109.47097 * 299.99546 * 19 18 17 21 21 H 1.08995 * 109.47134 * 300.00385 * 20 19 18 22 22 C 1.53009 * 109.46776 * 180.02562 * 20 19 18 23 23 N 1.46897 * 109.46865 * 65.00185 * 22 20 19 24 24 C 1.52992 * 109.47062 * 85.60293 * 15 13 4 25 25 H 1.09000 * 109.47280 * 170.82099 * 3 2 1 26 26 H 1.08996 * 109.47319 * 50.81751 * 3 2 1 27 27 H 0.97008 * 119.99707 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47082 * 60.00672 * 17 15 13 29 29 H 1.08995 * 109.47134 * 300.00083 * 17 15 13 30 30 H 1.08997 * 109.47213 * 179.97438 * 18 17 15 31 31 H 1.09001 * 109.47118 * 300.00797 * 18 17 15 32 32 H 1.08995 * 109.47443 * 59.99741 * 19 18 17 33 33 H 1.09005 * 109.47003 * 180.02562 * 19 18 17 34 34 H 1.08994 * 109.46688 * 185.00419 * 22 20 19 35 35 H 1.08998 * 109.46847 * 305.00364 * 22 20 19 36 36 H 1.00905 * 110.99617 * 179.97438 * 23 22 20 37 37 H 1.00893 * 111.00676 * 303.95491 * 23 22 20 38 38 H 1.09007 * 109.47688 * 59.99984 * 24 15 13 39 39 H 1.08998 * 109.47614 * 299.99737 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0966 -0.4900 1.2910 5 6 3.3498 0.3931 2.3088 6 1 4.0211 0.1172 3.1085 7 6 2.7428 1.6430 2.3111 8 7 1.6159 1.8273 1.6608 9 14 3.5287 3.0612 3.2387 10 1 4.4570 3.7889 2.3365 11 1 2.4707 3.9890 3.7133 12 1 4.2831 2.5332 4.4037 13 6 3.2971 -1.8095 1.4783 14 8 3.6119 -2.2257 2.5733 15 6 3.1302 -2.7679 0.3273 16 1 2.3296 -2.4175 -0.3240 17 6 2.7786 -4.1560 0.8664 18 6 2.6085 -5.1289 -0.3022 19 6 3.9143 -5.2057 -1.0958 20 6 4.2660 -3.8176 -1.6349 21 1 3.4652 -3.4671 -2.2859 22 6 5.5715 -3.8946 -2.4291 23 7 5.3726 -4.7343 -3.6179 24 6 4.4362 -2.8446 -0.4658 25 1 2.9709 1.0153 -0.1639 26 1 2.9717 -0.6484 -0.7965 27 1 1.1919 2.6998 1.6628 28 1 1.8481 -4.1013 1.4315 29 1 3.5792 -4.5063 1.5178 30 1 2.3584 -6.1178 0.0818 31 1 1.8077 -4.7782 -0.9533 32 1 4.7152 -5.5562 -0.4448 33 1 3.7931 -5.8985 -1.9287 34 1 5.8687 -2.8924 -2.7376 35 1 6.3519 -4.3288 -1.8041 36 1 6.2212 -4.8006 -4.1598 37 1 5.0344 -5.6497 -3.3617 38 1 5.2370 -3.1951 0.1856 39 1 4.6868 -1.8558 -0.8499 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713886599.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:21 Heat of formation + Delta-G solvation = -22.570113 kcal Electronic energy + Delta-G solvation = -20851.101441 eV Core-core repulsion = 17793.023278 eV Total energy + Delta-G solvation = -3058.078164 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.68600 -37.79177 -35.72887 -34.49359 -34.08043 -31.98710 -30.65709 -30.09254 -27.38037 -25.28221 -24.51838 -22.76054 -21.28326 -19.72794 -18.63798 -17.85459 -16.53260 -16.15813 -15.98105 -15.17381 -14.98388 -14.62123 -14.20187 -13.90498 -13.60102 -13.33005 -12.98932 -12.84375 -12.74182 -12.27347 -12.08048 -11.64540 -11.54244 -11.36275 -11.21673 -11.12178 -10.92264 -10.82386 -10.51516 -10.39521 -10.37700 -10.24278 -10.14451 -9.83959 -9.22259 -8.81491 -8.43431 -7.98466 -6.46983 -3.99211 3.10842 3.23110 3.27317 3.59311 3.86433 4.08209 4.17736 4.45399 4.73872 4.78842 4.84079 4.94113 5.09147 5.26531 5.30631 5.41139 5.49887 5.59174 5.62665 5.70206 5.73717 5.81293 5.90669 5.98336 6.10359 6.13346 6.27265 6.30512 6.40164 6.44678 6.47422 6.60803 6.74494 7.00961 7.28242 7.49644 7.96639 8.31323 8.89635 9.03986 9.23078 9.79403 10.57818 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.024245 B = 0.005552 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.579966 B = 5041.779569 C = 5116.295239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.246 3.754 3 C 0.222 3.778 4 N -0.444 5.444 5 C -0.317 4.317 6 H 0.105 0.895 7 C 0.033 3.967 8 N -0.869 5.869 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.464 3.536 14 O -0.572 6.572 15 C -0.101 4.101 16 H 0.079 0.921 17 C -0.097 4.097 18 C -0.117 4.117 19 C -0.114 4.114 20 C -0.086 4.086 21 H 0.080 0.920 22 C 0.065 3.935 23 N -0.853 5.853 24 C -0.101 4.101 25 H 0.112 0.888 26 H 0.088 0.912 27 H 0.273 0.727 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.026 0.974 36 H 0.338 0.662 37 H 0.339 0.661 38 H 0.068 0.932 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.672 -9.310 -9.737 15.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.073 4.073 3 C 0.094 3.906 4 N -0.165 5.165 5 C -0.444 4.444 6 H 0.123 0.877 7 C -0.171 4.171 8 N -0.507 5.507 9 Si 0.751 3.249 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.193 1.193 13 C 0.252 3.748 14 O -0.454 6.454 15 C -0.123 4.123 16 H 0.097 0.903 17 C -0.135 4.135 18 C -0.155 4.155 19 C -0.151 4.151 20 C -0.105 4.105 21 H 0.098 0.902 22 C -0.066 4.066 23 N -0.382 5.382 24 C -0.139 4.139 25 H 0.130 0.870 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.044 0.956 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.086 0.914 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.498 -8.784 -9.403 13.993 hybrid contribution 1.265 0.423 0.928 1.625 sum 6.763 -8.361 -8.475 13.692 Atomic orbital electron populations 1.80847 1.13572 1.10999 1.09673 1.29059 0.95231 0.91249 0.91729 1.18622 0.82138 1.02430 0.87365 1.43637 1.57428 1.04918 1.10478 1.19654 1.25950 0.93552 1.05216 0.87689 1.25302 0.94212 0.99697 0.97906 1.69777 1.13469 1.24339 1.43109 0.85951 0.78786 0.80440 0.79742 1.20165 1.21169 1.19345 1.20177 0.82944 0.82333 0.89321 1.90530 1.51763 1.76624 1.26467 1.21234 0.98566 0.95940 0.96588 0.90274 1.21305 1.02292 0.92964 0.96963 1.21538 0.97345 0.99235 0.97388 1.21596 0.97973 0.96568 0.98996 1.21214 0.97502 0.95715 0.96030 0.90160 1.21851 0.96404 0.97879 0.90433 1.58756 1.36957 1.19136 1.23394 1.21500 0.97002 0.99386 0.96039 0.86999 0.89430 0.91634 0.92049 0.91033 0.92170 0.92039 0.92260 0.92312 0.90857 0.95580 0.85042 0.84818 0.91374 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.52 18.54 42.16 0.78 -10.74 16 2 C 0.25 5.56 12.55 -20.76 -0.26 5.29 16 3 C 0.22 4.40 4.82 -6.83 -0.03 4.37 16 4 N -0.44 -10.34 2.58 -117.94 -0.30 -10.64 16 5 C -0.32 -8.19 9.18 -14.93 -0.14 -8.33 16 6 H 0.11 2.87 7.53 -52.49 -0.40 2.48 16 7 C 0.03 0.83 4.79 -17.47 -0.08 0.75 16 8 N -0.87 -22.53 9.55 55.50 0.53 -22.00 16 9 Si 0.92 19.78 29.61 -169.99 -5.03 14.75 16 10 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 13 C 0.46 10.42 6.71 -10.99 -0.07 10.35 16 14 O -0.57 -15.01 15.83 5.54 0.09 -14.92 16 15 C -0.10 -1.72 1.68 -91.77 -0.15 -1.87 16 16 H 0.08 1.32 6.35 -51.93 -0.33 0.99 16 17 C -0.10 -1.55 4.74 -26.73 -0.13 -1.68 16 18 C -0.12 -1.45 5.92 -26.73 -0.16 -1.60 16 19 C -0.11 -1.22 4.98 -26.73 -0.13 -1.36 16 20 C -0.09 -0.97 2.40 -90.59 -0.22 -1.19 16 21 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 22 C 0.06 0.64 6.25 -3.82 -0.02 0.62 16 23 N -0.85 -7.51 9.62 -10.37 -0.10 -7.61 16 24 C -0.10 -1.39 4.29 -26.71 -0.11 -1.50 16 25 H 0.11 2.21 7.14 -51.93 -0.37 1.84 16 26 H 0.09 1.35 5.45 -51.93 -0.28 1.07 16 27 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.21 7.87 -51.93 -0.41 0.80 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.54 6.68 -51.93 -0.35 0.20 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.34 2.39 9.08 -39.29 -0.36 2.03 16 37 H 0.34 2.67 7.24 -39.30 -0.28 2.39 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.91 7.26 -51.93 -0.38 0.53 16 LS Contribution 313.40 15.07 4.72 4.72 Total: -1.00 -31.06 313.40 -6.50 -37.56 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.67 Total: 5.03 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -1.52 Total: 3.84 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.91 Total: -50.98 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.09 Total: -14.92 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.06 -6.50 -37.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713886599.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.992 kcal (2) G-P(sol) polarization free energy of solvation -31.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds