Wall clock time and date at job start Mon Mar 30 2020 04:23:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13605 * 1
3 3 C 1.47195 * 179.97438 * 2 1
4 4 N 1.46502 * 109.47426 * 290.81923 * 3 2 1
5 5 C 1.37108 * 119.99884 * 268.71926 * 4 3 2
6 6 H 1.08000 * 119.99480 * 201.98753 * 5 4 3
7 7 C 1.38948 * 119.99893 * 21.98004 * 5 4 3
8 8 N 1.31407 * 119.99984 * 23.97253 * 7 5 4
9 9 Si 1.86797 * 119.99740 * 203.96976 * 7 5 4
10 10 H 1.48503 * 109.47231 * 90.00209 * 9 7 5
11 11 H 1.48509 * 109.47052 * 210.00257 * 9 7 5
12 12 H 1.48500 * 109.47415 * 330.00131 * 9 7 5
13 13 C 1.34769 * 120.00072 * 88.70961 * 4 3 2
14 14 O 1.21294 * 120.00212 * 185.12862 * 13 4 3
15 15 C 1.50700 * 119.99996 * 5.13117 * 13 4 3
16 16 H 1.08995 * 109.47271 * 325.59912 * 15 13 4
17 17 C 1.53006 * 109.46948 * 205.59913 * 15 13 4
18 18 C 1.53003 * 109.47071 * 179.97438 * 17 15 13
19 19 C 1.53005 * 109.46508 * 60.00438 * 18 17 15
20 20 C 1.53006 * 109.47097 * 299.99546 * 19 18 17
21 21 H 1.08995 * 109.47134 * 300.00385 * 20 19 18
22 22 C 1.53009 * 109.46776 * 180.02562 * 20 19 18
23 23 N 1.46897 * 109.46865 * 65.00185 * 22 20 19
24 24 C 1.52992 * 109.47062 * 85.60293 * 15 13 4
25 25 H 1.09000 * 109.47280 * 170.82099 * 3 2 1
26 26 H 1.08996 * 109.47319 * 50.81751 * 3 2 1
27 27 H 0.97008 * 119.99707 * 179.97438 * 8 7 5
28 28 H 1.09001 * 109.47082 * 60.00672 * 17 15 13
29 29 H 1.08995 * 109.47134 * 300.00083 * 17 15 13
30 30 H 1.08997 * 109.47213 * 179.97438 * 18 17 15
31 31 H 1.09001 * 109.47118 * 300.00797 * 18 17 15
32 32 H 1.08995 * 109.47443 * 59.99741 * 19 18 17
33 33 H 1.09005 * 109.47003 * 180.02562 * 19 18 17
34 34 H 1.08994 * 109.46688 * 185.00419 * 22 20 19
35 35 H 1.08998 * 109.46847 * 305.00364 * 22 20 19
36 36 H 1.00905 * 110.99617 * 179.97438 * 23 22 20
37 37 H 1.00893 * 111.00676 * 303.95491 * 23 22 20
38 38 H 1.09007 * 109.47688 * 59.99984 * 24 15 13
39 39 H 1.08998 * 109.47614 * 299.99737 * 24 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1361 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 7 3.0966 -0.4900 1.2910
5 6 3.3498 0.3931 2.3088
6 1 4.0211 0.1172 3.1085
7 6 2.7428 1.6430 2.3111
8 7 1.6159 1.8273 1.6608
9 14 3.5287 3.0612 3.2387
10 1 4.4570 3.7889 2.3365
11 1 2.4707 3.9890 3.7133
12 1 4.2831 2.5332 4.4037
13 6 3.2971 -1.8095 1.4783
14 8 3.6119 -2.2257 2.5733
15 6 3.1302 -2.7679 0.3273
16 1 2.3296 -2.4175 -0.3240
17 6 2.7786 -4.1560 0.8664
18 6 2.6085 -5.1289 -0.3022
19 6 3.9143 -5.2057 -1.0958
20 6 4.2660 -3.8176 -1.6349
21 1 3.4652 -3.4671 -2.2859
22 6 5.5715 -3.8946 -2.4291
23 7 5.3726 -4.7343 -3.6179
24 6 4.4362 -2.8446 -0.4658
25 1 2.9709 1.0153 -0.1639
26 1 2.9717 -0.6484 -0.7965
27 1 1.1919 2.6998 1.6628
28 1 1.8481 -4.1013 1.4315
29 1 3.5792 -4.5063 1.5178
30 1 2.3584 -6.1178 0.0818
31 1 1.8077 -4.7782 -0.9533
32 1 4.7152 -5.5562 -0.4448
33 1 3.7931 -5.8985 -1.9287
34 1 5.8687 -2.8924 -2.7376
35 1 6.3519 -4.3288 -1.8041
36 1 6.2212 -4.8006 -4.1598
37 1 5.0344 -5.6497 -3.3617
38 1 5.2370 -3.1951 0.1856
39 1 4.6868 -1.8558 -0.8499
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000713886599.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:23:21
Heat of formation + Delta-G solvation = -22.570113 kcal
Electronic energy + Delta-G solvation = -20851.101441 eV
Core-core repulsion = 17793.023278 eV
Total energy + Delta-G solvation = -3058.078164 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 265.153 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-39.68600 -37.79177 -35.72887 -34.49359 -34.08043 -31.98710 -30.65709 -30.09254
-27.38037 -25.28221 -24.51838 -22.76054 -21.28326 -19.72794 -18.63798 -17.85459
-16.53260 -16.15813 -15.98105 -15.17381 -14.98388 -14.62123 -14.20187 -13.90498
-13.60102 -13.33005 -12.98932 -12.84375 -12.74182 -12.27347 -12.08048 -11.64540
-11.54244 -11.36275 -11.21673 -11.12178 -10.92264 -10.82386 -10.51516 -10.39521
-10.37700 -10.24278 -10.14451 -9.83959 -9.22259 -8.81491 -8.43431 -7.98466
-6.46983 -3.99211 3.10842 3.23110 3.27317 3.59311 3.86433 4.08209
4.17736 4.45399 4.73872 4.78842 4.84079 4.94113 5.09147 5.26531
5.30631 5.41139 5.49887 5.59174 5.62665 5.70206 5.73717 5.81293
5.90669 5.98336 6.10359 6.13346 6.27265 6.30512 6.40164 6.44678
6.47422 6.60803 6.74494 7.00961 7.28242 7.49644 7.96639 8.31323
8.89635 9.03986 9.23078 9.79403 10.57818
Molecular weight = 265.15amu
Principal moments of inertia in cm(-1)
A = 0.024245 B = 0.005552 C = 0.005471
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1154.579966 B = 5041.779569 C = 5116.295239
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.470 5.470
2 C 0.246 3.754
3 C 0.222 3.778
4 N -0.444 5.444
5 C -0.317 4.317
6 H 0.105 0.895
7 C 0.033 3.967
8 N -0.869 5.869
9 Si 0.924 3.076
10 H -0.276 1.276
11 H -0.286 1.286
12 H -0.269 1.269
13 C 0.464 3.536
14 O -0.572 6.572
15 C -0.101 4.101
16 H 0.079 0.921
17 C -0.097 4.097
18 C -0.117 4.117
19 C -0.114 4.114
20 C -0.086 4.086
21 H 0.080 0.920
22 C 0.065 3.935
23 N -0.853 5.853
24 C -0.101 4.101
25 H 0.112 0.888
26 H 0.088 0.912
27 H 0.273 0.727
28 H 0.061 0.939
29 H 0.071 0.929
30 H 0.060 0.940
31 H 0.061 0.939
32 H 0.059 0.941
33 H 0.058 0.942
34 H 0.073 0.927
35 H 0.026 0.974
36 H 0.338 0.662
37 H 0.339 0.661
38 H 0.068 0.932
39 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.672 -9.310 -9.737 15.503
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.151 5.151
2 C -0.073 4.073
3 C 0.094 3.906
4 N -0.165 5.165
5 C -0.444 4.444
6 H 0.123 0.877
7 C -0.171 4.171
8 N -0.507 5.507
9 Si 0.751 3.249
10 H -0.202 1.202
11 H -0.212 1.212
12 H -0.193 1.193
13 C 0.252 3.748
14 O -0.454 6.454
15 C -0.123 4.123
16 H 0.097 0.903
17 C -0.135 4.135
18 C -0.155 4.155
19 C -0.151 4.151
20 C -0.105 4.105
21 H 0.098 0.902
22 C -0.066 4.066
23 N -0.382 5.382
24 C -0.139 4.139
25 H 0.130 0.870
26 H 0.106 0.894
27 H 0.084 0.916
28 H 0.080 0.920
29 H 0.090 0.910
30 H 0.078 0.922
31 H 0.080 0.920
32 H 0.077 0.923
33 H 0.077 0.923
34 H 0.091 0.909
35 H 0.044 0.956
36 H 0.150 0.850
37 H 0.152 0.848
38 H 0.086 0.914
39 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 5.498 -8.784 -9.403 13.993
hybrid contribution 1.265 0.423 0.928 1.625
sum 6.763 -8.361 -8.475 13.692
Atomic orbital electron populations
1.80847 1.13572 1.10999 1.09673 1.29059 0.95231 0.91249 0.91729
1.18622 0.82138 1.02430 0.87365 1.43637 1.57428 1.04918 1.10478
1.19654 1.25950 0.93552 1.05216 0.87689 1.25302 0.94212 0.99697
0.97906 1.69777 1.13469 1.24339 1.43109 0.85951 0.78786 0.80440
0.79742 1.20165 1.21169 1.19345 1.20177 0.82944 0.82333 0.89321
1.90530 1.51763 1.76624 1.26467 1.21234 0.98566 0.95940 0.96588
0.90274 1.21305 1.02292 0.92964 0.96963 1.21538 0.97345 0.99235
0.97388 1.21596 0.97973 0.96568 0.98996 1.21214 0.97502 0.95715
0.96030 0.90160 1.21851 0.96404 0.97879 0.90433 1.58756 1.36957
1.19136 1.23394 1.21500 0.97002 0.99386 0.96039 0.86999 0.89430
0.91634 0.92049 0.91033 0.92170 0.92039 0.92260 0.92312 0.90857
0.95580 0.85042 0.84818 0.91374 0.91276
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.47 -11.52 18.54 42.16 0.78 -10.74 16
2 C 0.25 5.56 12.55 -20.76 -0.26 5.29 16
3 C 0.22 4.40 4.82 -6.83 -0.03 4.37 16
4 N -0.44 -10.34 2.58 -117.94 -0.30 -10.64 16
5 C -0.32 -8.19 9.18 -14.93 -0.14 -8.33 16
6 H 0.11 2.87 7.53 -52.49 -0.40 2.48 16
7 C 0.03 0.83 4.79 -17.47 -0.08 0.75 16
8 N -0.87 -22.53 9.55 55.50 0.53 -22.00 16
9 Si 0.92 19.78 29.61 -169.99 -5.03 14.75 16
10 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16
11 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16
12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16
13 C 0.46 10.42 6.71 -10.99 -0.07 10.35 16
14 O -0.57 -15.01 15.83 5.54 0.09 -14.92 16
15 C -0.10 -1.72 1.68 -91.77 -0.15 -1.87 16
16 H 0.08 1.32 6.35 -51.93 -0.33 0.99 16
17 C -0.10 -1.55 4.74 -26.73 -0.13 -1.68 16
18 C -0.12 -1.45 5.92 -26.73 -0.16 -1.60 16
19 C -0.11 -1.22 4.98 -26.73 -0.13 -1.36 16
20 C -0.09 -0.97 2.40 -90.59 -0.22 -1.19 16
21 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16
22 C 0.06 0.64 6.25 -3.82 -0.02 0.62 16
23 N -0.85 -7.51 9.62 -10.37 -0.10 -7.61 16
24 C -0.10 -1.39 4.29 -26.71 -0.11 -1.50 16
25 H 0.11 2.21 7.14 -51.93 -0.37 1.84 16
26 H 0.09 1.35 5.45 -51.93 -0.28 1.07 16
27 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16
28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
29 H 0.07 1.21 7.87 -51.93 -0.41 0.80 16
30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
33 H 0.06 0.54 6.68 -51.93 -0.35 0.20 16
34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
35 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16
36 H 0.34 2.39 9.08 -39.29 -0.36 2.03 16
37 H 0.34 2.67 7.24 -39.30 -0.28 2.39 16
38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
39 H 0.07 0.91 7.26 -51.93 -0.38 0.53 16
LS Contribution 313.40 15.07 4.72 4.72
Total: -1.00 -31.06 313.40 -6.50 -37.56
By element:
Atomic # 1 Polarization: 10.70 SS G_CDS: -5.67 Total: 5.03 kcal
Atomic # 6 Polarization: 5.36 SS G_CDS: -1.52 Total: 3.84 kcal
Atomic # 7 Polarization: -51.89 SS G_CDS: 0.91 Total: -50.98 kcal
Atomic # 8 Polarization: -15.01 SS G_CDS: 0.09 Total: -14.92 kcal
Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal
Total LS contribution 4.72 Total: 4.72 kcal
Total: -31.06 -6.50 -37.56 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000713886599.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.992 kcal
(2) G-P(sol) polarization free energy of solvation -31.061 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.069 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.570 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds