Wall clock time and date at job start Mon Mar 30 2020 04:23:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13605 * 1
3 3 C 1.47195 * 179.97438 * 2 1
4 4 N 1.46502 * 109.47426 * 290.81923 * 3 2 1
5 5 C 1.37108 * 119.99884 * 268.71926 * 4 3 2
6 6 H 1.08000 * 119.99480 * 201.98753 * 5 4 3
7 7 C 1.38948 * 119.99893 * 21.98004 * 5 4 3
8 8 N 1.31407 * 119.99984 * 23.97253 * 7 5 4
9 9 Si 1.86797 * 119.99740 * 203.96976 * 7 5 4
10 10 H 1.48503 * 109.47231 * 90.00209 * 9 7 5
11 11 H 1.48509 * 109.47052 * 210.00257 * 9 7 5
12 12 H 1.48500 * 109.47415 * 330.00131 * 9 7 5
13 13 C 1.34769 * 120.00072 * 88.70961 * 4 3 2
14 14 O 1.21294 * 120.00212 * 185.12862 * 13 4 3
15 15 C 1.50700 * 119.99996 * 5.13117 * 13 4 3
16 16 H 1.08995 * 109.47271 * 325.59912 * 15 13 4
17 17 C 1.53006 * 109.46948 * 205.59913 * 15 13 4
18 18 C 1.53003 * 109.47071 * 179.97438 * 17 15 13
19 19 C 1.53005 * 109.46508 * 60.00438 * 18 17 15
20 20 C 1.53006 * 109.47097 * 299.99546 * 19 18 17
21 21 H 1.08995 * 109.47134 * 300.00385 * 20 19 18
22 22 C 1.53009 * 109.46776 * 180.02562 * 20 19 18
23 23 N 1.46897 * 109.46865 * 65.00185 * 22 20 19
24 24 C 1.52992 * 109.47062 * 85.60293 * 15 13 4
25 25 H 1.09000 * 109.47280 * 170.82099 * 3 2 1
26 26 H 1.08996 * 109.47319 * 50.81751 * 3 2 1
27 27 H 0.97008 * 119.99707 * 179.97438 * 8 7 5
28 28 H 1.09001 * 109.47082 * 60.00672 * 17 15 13
29 29 H 1.08995 * 109.47134 * 300.00083 * 17 15 13
30 30 H 1.08997 * 109.47213 * 179.97438 * 18 17 15
31 31 H 1.09001 * 109.47118 * 300.00797 * 18 17 15
32 32 H 1.08995 * 109.47443 * 59.99741 * 19 18 17
33 33 H 1.09005 * 109.47003 * 180.02562 * 19 18 17
34 34 H 1.08994 * 109.46688 * 185.00419 * 22 20 19
35 35 H 1.08998 * 109.46847 * 305.00364 * 22 20 19
36 36 H 1.00905 * 110.99617 * 179.97438 * 23 22 20
37 37 H 1.00893 * 111.00676 * 303.95491 * 23 22 20
38 38 H 1.09007 * 109.47688 * 59.99984 * 24 15 13
39 39 H 1.08998 * 109.47614 * 299.99737 * 24 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1361 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 7 3.0966 -0.4900 1.2910
5 6 3.3498 0.3931 2.3088
6 1 4.0211 0.1172 3.1085
7 6 2.7428 1.6430 2.3111
8 7 1.6159 1.8273 1.6608
9 14 3.5287 3.0612 3.2387
10 1 4.4570 3.7889 2.3365
11 1 2.4707 3.9890 3.7133
12 1 4.2831 2.5332 4.4037
13 6 3.2971 -1.8095 1.4783
14 8 3.6119 -2.2257 2.5733
15 6 3.1302 -2.7679 0.3273
16 1 2.3296 -2.4175 -0.3240
17 6 2.7786 -4.1560 0.8664
18 6 2.6085 -5.1289 -0.3022
19 6 3.9143 -5.2057 -1.0958
20 6 4.2660 -3.8176 -1.6349
21 1 3.4652 -3.4671 -2.2859
22 6 5.5715 -3.8946 -2.4291
23 7 5.3726 -4.7343 -3.6179
24 6 4.4362 -2.8446 -0.4658
25 1 2.9709 1.0153 -0.1639
26 1 2.9717 -0.6484 -0.7965
27 1 1.1919 2.6998 1.6628
28 1 1.8481 -4.1013 1.4315
29 1 3.5792 -4.5063 1.5178
30 1 2.3584 -6.1178 0.0818
31 1 1.8077 -4.7782 -0.9533
32 1 4.7152 -5.5562 -0.4448
33 1 3.7931 -5.8985 -1.9287
34 1 5.8687 -2.8924 -2.7376
35 1 6.3519 -4.3288 -1.8041
36 1 6.2212 -4.8006 -4.1598
37 1 5.0344 -5.6497 -3.3617
38 1 5.2370 -3.1951 0.1856
39 1 4.6868 -1.8558 -0.8499
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000713886599.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:23:21
Heat of formation + Delta-G solvation = -43.396142 kcal
Electronic energy + Delta-G solvation = -20852.004526 eV
Core-core repulsion = 17793.023278 eV
Total energy + Delta-G solvation = -3058.981248 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 265.153 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.19660 -39.10139 -37.54892 -36.09557 -35.32372 -33.83731 -31.86071 -31.12024
-29.13356 -26.99233 -25.53341 -24.05032 -22.44967 -20.76238 -20.21106 -19.71459
-18.17899 -17.88823 -16.92160 -16.44064 -16.23598 -16.04876 -15.74726 -15.11594
-14.95730 -14.69848 -14.44896 -14.27823 -13.97059 -13.76770 -13.55083 -13.27699
-13.05070 -12.86833 -12.78020 -12.40553 -12.31067 -12.23270 -12.09761 -12.06404
-11.83845 -11.40309 -11.32184 -11.10720 -10.88783 -10.22237 -9.90419 -9.47046
-8.40777 -5.99590 1.38728 1.46640 1.57424 1.82737 2.10940 2.30108
2.38030 2.97444 3.13088 3.58941 3.68148 3.77442 3.86647 3.94407
4.19519 4.26825 4.44835 4.45511 4.50833 4.56974 4.61452 4.74517
4.76649 4.77687 4.89335 5.00267 5.15329 5.22681 5.31484 5.36390
5.38716 5.44819 5.47420 5.63926 6.06223 6.36449 6.40110 6.72696
7.09412 7.13126 7.35920 7.94831 8.61664
Molecular weight = 265.15amu
Principal moments of inertia in cm(-1)
A = 0.024245 B = 0.005552 C = 0.005471
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1154.579966 B = 5041.779569 C = 5116.295239
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.507 5.507
2 C 0.256 3.744
3 C 0.224 3.776
4 N -0.456 5.456
5 C -0.343 4.343
6 H 0.080 0.920
7 C 0.005 3.995
8 N -0.889 5.889
9 Si 0.986 3.014
10 H -0.256 1.256
11 H -0.289 1.289
12 H -0.276 1.276
13 C 0.456 3.544
14 O -0.619 6.619
15 C -0.092 4.092
16 H 0.087 0.913
17 C -0.097 4.097
18 C -0.110 4.110
19 C -0.110 4.110
20 C -0.078 4.078
21 H 0.081 0.919
22 C 0.070 3.930
23 N -0.857 5.857
24 C -0.095 4.095
25 H 0.116 0.884
26 H 0.137 0.863
27 H 0.273 0.727
28 H 0.036 0.964
29 H 0.056 0.944
30 H 0.074 0.926
31 H 0.066 0.934
32 H 0.059 0.941
33 H 0.083 0.917
34 H 0.073 0.927
35 H 0.029 0.971
36 H 0.349 0.651
37 H 0.345 0.655
38 H 0.058 0.942
39 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.640 -9.754 -11.810 17.586
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.188 5.188
2 C -0.061 4.061
3 C 0.097 3.903
4 N -0.176 5.176
5 C -0.470 4.470
6 H 0.097 0.903
7 C -0.198 4.198
8 N -0.527 5.527
9 Si 0.811 3.189
10 H -0.181 1.181
11 H -0.215 1.215
12 H -0.201 1.201
13 C 0.246 3.754
14 O -0.504 6.504
15 C -0.114 4.114
16 H 0.105 0.895
17 C -0.135 4.135
18 C -0.147 4.147
19 C -0.147 4.147
20 C -0.097 4.097
21 H 0.099 0.901
22 C -0.061 4.061
23 N -0.388 5.388
24 C -0.133 4.133
25 H 0.134 0.866
26 H 0.154 0.846
27 H 0.083 0.917
28 H 0.055 0.945
29 H 0.075 0.925
30 H 0.093 0.907
31 H 0.084 0.916
32 H 0.078 0.922
33 H 0.101 0.899
34 H 0.092 0.908
35 H 0.047 0.953
36 H 0.162 0.838
37 H 0.159 0.841
38 H 0.077 0.923
39 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 6.470 -9.233 -11.515 16.115
hybrid contribution 0.947 0.527 1.635 1.962
sum 7.418 -8.706 -9.880 15.114
Atomic orbital electron populations
1.80842 1.14786 1.12356 1.10830 1.29593 0.95804 0.90087 0.90628
1.18965 0.80444 1.03818 0.87071 1.43828 1.57394 1.05125 1.11207
1.19572 1.26476 0.94887 1.06054 0.90262 1.25958 0.94153 1.01123
0.98517 1.69864 1.14103 1.24636 1.44109 0.85033 0.77895 0.77426
0.78588 1.18083 1.21494 1.20125 1.21212 0.81156 0.82768 0.90243
1.90492 1.53562 1.77509 1.28842 1.21228 1.00665 0.94741 0.94737
0.89482 1.21304 1.00431 0.93537 0.98225 1.21497 0.98580 0.98695
0.95974 1.21589 0.96873 0.96774 0.99512 1.21131 0.98496 0.95157
0.94908 0.90105 1.21734 0.95366 0.98328 0.90702 1.58721 1.37779
1.19448 1.22889 1.21478 0.94571 1.00870 0.96430 0.86642 0.84588
0.91698 0.94513 0.92487 0.90737 0.91560 0.92235 0.89895 0.90814
0.95307 0.83823 0.84121 0.92309 0.90389
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.51 -24.74 18.54 20.01 0.37 -24.37 16
2 C 0.26 11.45 12.55 89.44 1.12 12.57 16
3 C 0.22 8.61 4.82 84.57 0.41 9.02 16
4 N -0.46 -21.34 2.58 -645.42 -1.67 -23.01 16
5 C -0.34 -18.06 9.18 84.04 0.77 -17.28 16
6 H 0.08 4.52 7.53 -2.91 -0.02 4.50 16
7 C 0.00 0.25 4.79 84.93 0.41 0.66 16
8 N -0.89 -45.97 9.55 21.66 0.21 -45.76 16
9 Si 0.99 40.54 29.61 68.60 2.03 42.57 16
10 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16
11 H -0.29 -11.97 7.11 99.48 0.71 -11.27 16
12 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16
13 C 0.46 20.81 6.71 87.66 0.59 21.39 16
14 O -0.62 -33.76 15.83 -3.07 -0.05 -33.81 16
15 C -0.09 -3.06 1.68 -11.54 -0.02 -3.08 16
16 H 0.09 2.75 6.35 -2.39 -0.02 2.74 16
17 C -0.10 -3.08 4.74 30.60 0.15 -2.93 16
18 C -0.11 -2.47 5.92 30.60 0.18 -2.29 16
19 C -0.11 -2.03 4.98 30.60 0.15 -1.88 16
20 C -0.08 -1.54 2.40 -10.77 -0.03 -1.56 16
21 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16
22 C 0.07 1.16 6.25 86.31 0.54 1.69 16
23 N -0.86 -12.16 9.62 -186.72 -1.80 -13.95 16
24 C -0.09 -2.45 4.29 30.61 0.13 -2.32 16
25 H 0.12 4.41 7.14 -2.39 -0.02 4.40 16
26 H 0.14 3.85 5.45 -2.39 -0.01 3.83 16
27 H 0.27 13.69 8.31 -92.70 -0.77 12.92 16
28 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16
29 H 0.06 1.95 7.87 -2.39 -0.02 1.93 16
30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16
31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16
32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
33 H 0.08 1.19 6.68 -2.38 -0.02 1.18 16
34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16
35 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16
36 H 0.35 3.82 9.08 -89.69 -0.81 3.00 16
37 H 0.34 4.16 7.24 -89.70 -0.65 3.51 16
38 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16
39 H 0.08 1.87 7.26 -2.39 -0.02 1.85 16
Total: -1.00 -68.53 313.40 3.11 -65.42
By element:
Atomic # 1 Polarization: 19.29 SS G_CDS: -0.39 Total: 18.91 kcal
Atomic # 6 Polarization: 9.60 SS G_CDS: 4.40 Total: 14.00 kcal
Atomic # 7 Polarization: -104.20 SS G_CDS: -2.88 Total: -107.09 kcal
Atomic # 8 Polarization: -33.76 SS G_CDS: -0.05 Total: -33.81 kcal
Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal
Total: -68.53 3.11 -65.42 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000713886599.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.023 kcal
(2) G-P(sol) polarization free energy of solvation -68.530 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.507 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.420 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.396 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds