Wall clock time and date at job start Mon Mar 30 2020 04:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47426 * 290.81923 * 3 2 1 5 5 C 1.37108 * 119.99884 * 268.71926 * 4 3 2 6 6 H 1.08000 * 119.99480 * 201.98753 * 5 4 3 7 7 C 1.38948 * 119.99893 * 21.98004 * 5 4 3 8 8 N 1.31407 * 119.99984 * 23.97253 * 7 5 4 9 9 Si 1.86797 * 119.99740 * 203.96976 * 7 5 4 10 10 H 1.48503 * 109.47231 * 90.00209 * 9 7 5 11 11 H 1.48509 * 109.47052 * 210.00257 * 9 7 5 12 12 H 1.48500 * 109.47415 * 330.00131 * 9 7 5 13 13 C 1.34769 * 120.00072 * 88.70961 * 4 3 2 14 14 O 1.21294 * 120.00212 * 185.12862 * 13 4 3 15 15 C 1.50700 * 119.99996 * 5.13117 * 13 4 3 16 16 H 1.08995 * 109.47271 * 325.59912 * 15 13 4 17 17 C 1.53006 * 109.46948 * 205.59913 * 15 13 4 18 18 C 1.53003 * 109.47071 * 179.97438 * 17 15 13 19 19 C 1.53005 * 109.46508 * 60.00438 * 18 17 15 20 20 C 1.53006 * 109.47097 * 299.99546 * 19 18 17 21 21 H 1.08995 * 109.47134 * 300.00385 * 20 19 18 22 22 C 1.53009 * 109.46776 * 180.02562 * 20 19 18 23 23 N 1.46897 * 109.46865 * 65.00185 * 22 20 19 24 24 C 1.52992 * 109.47062 * 85.60293 * 15 13 4 25 25 H 1.09000 * 109.47280 * 170.82099 * 3 2 1 26 26 H 1.08996 * 109.47319 * 50.81751 * 3 2 1 27 27 H 0.97008 * 119.99707 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47082 * 60.00672 * 17 15 13 29 29 H 1.08995 * 109.47134 * 300.00083 * 17 15 13 30 30 H 1.08997 * 109.47213 * 179.97438 * 18 17 15 31 31 H 1.09001 * 109.47118 * 300.00797 * 18 17 15 32 32 H 1.08995 * 109.47443 * 59.99741 * 19 18 17 33 33 H 1.09005 * 109.47003 * 180.02562 * 19 18 17 34 34 H 1.08994 * 109.46688 * 185.00419 * 22 20 19 35 35 H 1.08998 * 109.46847 * 305.00364 * 22 20 19 36 36 H 1.00905 * 110.99617 * 179.97438 * 23 22 20 37 37 H 1.00893 * 111.00676 * 303.95491 * 23 22 20 38 38 H 1.09007 * 109.47688 * 59.99984 * 24 15 13 39 39 H 1.08998 * 109.47614 * 299.99737 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0966 -0.4900 1.2910 5 6 3.3498 0.3931 2.3088 6 1 4.0211 0.1172 3.1085 7 6 2.7428 1.6430 2.3111 8 7 1.6159 1.8273 1.6608 9 14 3.5287 3.0612 3.2387 10 1 4.4570 3.7889 2.3365 11 1 2.4707 3.9890 3.7133 12 1 4.2831 2.5332 4.4037 13 6 3.2971 -1.8095 1.4783 14 8 3.6119 -2.2257 2.5733 15 6 3.1302 -2.7679 0.3273 16 1 2.3296 -2.4175 -0.3240 17 6 2.7786 -4.1560 0.8664 18 6 2.6085 -5.1289 -0.3022 19 6 3.9143 -5.2057 -1.0958 20 6 4.2660 -3.8176 -1.6349 21 1 3.4652 -3.4671 -2.2859 22 6 5.5715 -3.8946 -2.4291 23 7 5.3726 -4.7343 -3.6179 24 6 4.4362 -2.8446 -0.4658 25 1 2.9709 1.0153 -0.1639 26 1 2.9717 -0.6484 -0.7965 27 1 1.1919 2.6998 1.6628 28 1 1.8481 -4.1013 1.4315 29 1 3.5792 -4.5063 1.5178 30 1 2.3584 -6.1178 0.0818 31 1 1.8077 -4.7782 -0.9533 32 1 4.7152 -5.5562 -0.4448 33 1 3.7931 -5.8985 -1.9287 34 1 5.8687 -2.8924 -2.7376 35 1 6.3519 -4.3288 -1.8041 36 1 6.2212 -4.8006 -4.1598 37 1 5.0344 -5.6497 -3.3617 38 1 5.2370 -3.1951 0.1856 39 1 4.6868 -1.8558 -0.8499 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713886599.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:21 Heat of formation + Delta-G solvation = -43.396142 kcal Electronic energy + Delta-G solvation = -20852.004526 eV Core-core repulsion = 17793.023278 eV Total energy + Delta-G solvation = -3058.981248 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.19660 -39.10139 -37.54892 -36.09557 -35.32372 -33.83731 -31.86071 -31.12024 -29.13356 -26.99233 -25.53341 -24.05032 -22.44967 -20.76238 -20.21106 -19.71459 -18.17899 -17.88823 -16.92160 -16.44064 -16.23598 -16.04876 -15.74726 -15.11594 -14.95730 -14.69848 -14.44896 -14.27823 -13.97059 -13.76770 -13.55083 -13.27699 -13.05070 -12.86833 -12.78020 -12.40553 -12.31067 -12.23270 -12.09761 -12.06404 -11.83845 -11.40309 -11.32184 -11.10720 -10.88783 -10.22237 -9.90419 -9.47046 -8.40777 -5.99590 1.38728 1.46640 1.57424 1.82737 2.10940 2.30108 2.38030 2.97444 3.13088 3.58941 3.68148 3.77442 3.86647 3.94407 4.19519 4.26825 4.44835 4.45511 4.50833 4.56974 4.61452 4.74517 4.76649 4.77687 4.89335 5.00267 5.15329 5.22681 5.31484 5.36390 5.38716 5.44819 5.47420 5.63926 6.06223 6.36449 6.40110 6.72696 7.09412 7.13126 7.35920 7.94831 8.61664 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.024245 B = 0.005552 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.579966 B = 5041.779569 C = 5116.295239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.256 3.744 3 C 0.224 3.776 4 N -0.456 5.456 5 C -0.343 4.343 6 H 0.080 0.920 7 C 0.005 3.995 8 N -0.889 5.889 9 Si 0.986 3.014 10 H -0.256 1.256 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.456 3.544 14 O -0.619 6.619 15 C -0.092 4.092 16 H 0.087 0.913 17 C -0.097 4.097 18 C -0.110 4.110 19 C -0.110 4.110 20 C -0.078 4.078 21 H 0.081 0.919 22 C 0.070 3.930 23 N -0.857 5.857 24 C -0.095 4.095 25 H 0.116 0.884 26 H 0.137 0.863 27 H 0.273 0.727 28 H 0.036 0.964 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.029 0.971 36 H 0.349 0.651 37 H 0.345 0.655 38 H 0.058 0.942 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.640 -9.754 -11.810 17.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.061 4.061 3 C 0.097 3.903 4 N -0.176 5.176 5 C -0.470 4.470 6 H 0.097 0.903 7 C -0.198 4.198 8 N -0.527 5.527 9 Si 0.811 3.189 10 H -0.181 1.181 11 H -0.215 1.215 12 H -0.201 1.201 13 C 0.246 3.754 14 O -0.504 6.504 15 C -0.114 4.114 16 H 0.105 0.895 17 C -0.135 4.135 18 C -0.147 4.147 19 C -0.147 4.147 20 C -0.097 4.097 21 H 0.099 0.901 22 C -0.061 4.061 23 N -0.388 5.388 24 C -0.133 4.133 25 H 0.134 0.866 26 H 0.154 0.846 27 H 0.083 0.917 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.047 0.953 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.077 0.923 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.470 -9.233 -11.515 16.115 hybrid contribution 0.947 0.527 1.635 1.962 sum 7.418 -8.706 -9.880 15.114 Atomic orbital electron populations 1.80842 1.14786 1.12356 1.10830 1.29593 0.95804 0.90087 0.90628 1.18965 0.80444 1.03818 0.87071 1.43828 1.57394 1.05125 1.11207 1.19572 1.26476 0.94887 1.06054 0.90262 1.25958 0.94153 1.01123 0.98517 1.69864 1.14103 1.24636 1.44109 0.85033 0.77895 0.77426 0.78588 1.18083 1.21494 1.20125 1.21212 0.81156 0.82768 0.90243 1.90492 1.53562 1.77509 1.28842 1.21228 1.00665 0.94741 0.94737 0.89482 1.21304 1.00431 0.93537 0.98225 1.21497 0.98580 0.98695 0.95974 1.21589 0.96873 0.96774 0.99512 1.21131 0.98496 0.95157 0.94908 0.90105 1.21734 0.95366 0.98328 0.90702 1.58721 1.37779 1.19448 1.22889 1.21478 0.94571 1.00870 0.96430 0.86642 0.84588 0.91698 0.94513 0.92487 0.90737 0.91560 0.92235 0.89895 0.90814 0.95307 0.83823 0.84121 0.92309 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.74 18.54 20.01 0.37 -24.37 16 2 C 0.26 11.45 12.55 89.44 1.12 12.57 16 3 C 0.22 8.61 4.82 84.57 0.41 9.02 16 4 N -0.46 -21.34 2.58 -645.42 -1.67 -23.01 16 5 C -0.34 -18.06 9.18 84.04 0.77 -17.28 16 6 H 0.08 4.52 7.53 -2.91 -0.02 4.50 16 7 C 0.00 0.25 4.79 84.93 0.41 0.66 16 8 N -0.89 -45.97 9.55 21.66 0.21 -45.76 16 9 Si 0.99 40.54 29.61 68.60 2.03 42.57 16 10 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 11 H -0.29 -11.97 7.11 99.48 0.71 -11.27 16 12 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 13 C 0.46 20.81 6.71 87.66 0.59 21.39 16 14 O -0.62 -33.76 15.83 -3.07 -0.05 -33.81 16 15 C -0.09 -3.06 1.68 -11.54 -0.02 -3.08 16 16 H 0.09 2.75 6.35 -2.39 -0.02 2.74 16 17 C -0.10 -3.08 4.74 30.60 0.15 -2.93 16 18 C -0.11 -2.47 5.92 30.60 0.18 -2.29 16 19 C -0.11 -2.03 4.98 30.60 0.15 -1.88 16 20 C -0.08 -1.54 2.40 -10.77 -0.03 -1.56 16 21 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 22 C 0.07 1.16 6.25 86.31 0.54 1.69 16 23 N -0.86 -12.16 9.62 -186.72 -1.80 -13.95 16 24 C -0.09 -2.45 4.29 30.61 0.13 -2.32 16 25 H 0.12 4.41 7.14 -2.39 -0.02 4.40 16 26 H 0.14 3.85 5.45 -2.39 -0.01 3.83 16 27 H 0.27 13.69 8.31 -92.70 -0.77 12.92 16 28 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.95 7.87 -2.39 -0.02 1.93 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.19 6.68 -2.38 -0.02 1.18 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.35 3.82 9.08 -89.69 -0.81 3.00 16 37 H 0.34 4.16 7.24 -89.70 -0.65 3.51 16 38 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.08 1.87 7.26 -2.39 -0.02 1.85 16 Total: -1.00 -68.53 313.40 3.11 -65.42 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -0.39 Total: 18.91 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 4.40 Total: 14.00 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -2.88 Total: -107.09 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.05 Total: -33.81 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -68.53 3.11 -65.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713886599.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.023 kcal (2) G-P(sol) polarization free energy of solvation -68.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds