Wall clock time and date at job start Mon Mar 30 2020 05:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46950 * 2 1 4 4 N 1.46503 * 109.47010 * 179.97438 * 3 2 1 5 5 C 1.35317 * 125.86318 * 125.32275 * 4 3 2 6 6 C 1.35350 * 106.17056 * 180.12149 * 5 4 3 7 7 C 1.50700 * 126.74903 * 179.85481 * 6 5 4 8 8 C 1.52997 * 109.99390 * 63.63262 * 7 6 5 9 9 C 1.54102 * 109.87865 * 184.71287 * 7 6 5 10 10 C 1.54817 * 104.18731 * 121.45518 * 9 7 6 11 11 C 1.54991 * 102.09285 * 20.87902 * 10 9 7 12 12 H 1.09001 * 110.61405 * 81.47664 * 11 10 9 13 13 C 1.50694 * 110.62094 * 204.47354 * 11 10 9 14 14 H 1.07998 * 119.99812 * 0.02562 * 13 11 10 15 15 C 1.37885 * 120.00142 * 180.02562 * 13 11 10 16 16 N 1.31511 * 119.99619 * 0.02562 * 15 13 11 17 17 Si 1.86792 * 119.99883 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47623 * 60.00076 * 17 15 13 19 19 H 1.48506 * 109.47036 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46966 * 299.99877 * 17 15 13 21 21 O 1.43740 * 109.88088 * 302.54578 * 7 6 5 22 22 N 1.33766 * 106.49890 * 359.59412 * 6 5 4 23 23 N 1.28637 * 108.88529 * 0.26601 * 22 6 5 24 24 H 1.09001 * 109.47069 * 299.99686 * 1 2 3 25 25 H 1.09006 * 109.47410 * 59.99525 * 1 2 3 26 26 H 1.08998 * 109.47043 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46638 * 239.99999 * 2 1 3 28 28 H 1.08999 * 109.46598 * 120.00273 * 2 1 3 29 29 H 1.09001 * 109.46977 * 60.00258 * 3 2 1 30 30 H 1.08996 * 109.47425 * 300.00322 * 3 2 1 31 31 H 1.07997 * 126.91513 * 359.97438 * 5 4 3 32 32 H 1.08992 * 109.47651 * 181.08419 * 8 7 6 33 33 H 1.09002 * 109.46680 * 301.08309 * 8 7 6 34 34 H 1.09002 * 109.47170 * 61.08197 * 8 7 6 35 35 H 1.09004 * 110.48756 * 2.78023 * 9 7 6 36 36 H 1.08996 * 110.49165 * 240.13192 * 9 7 6 37 37 H 1.08996 * 110.90849 * 139.08031 * 10 9 7 38 38 H 1.09004 * 110.90250 * 262.68455 * 10 9 7 39 39 H 0.96997 * 119.99858 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2981 2.0764 -0.8939 6 6 5.5723 1.8105 -0.5228 7 6 6.8284 2.2887 -1.2044 8 6 6.9146 3.8145 -1.1318 9 6 8.0629 1.6614 -0.5281 10 6 8.7731 0.8951 -1.6706 11 6 8.2046 1.5932 -2.9322 12 1 8.7397 2.5218 -3.1310 13 6 8.2737 0.6737 -4.1241 14 1 8.6807 -0.3207 -4.0160 15 6 7.8173 1.1021 -5.3527 16 7 7.3221 2.3133 -5.4844 17 14 7.9023 -0.0380 -6.8299 18 1 7.1055 -1.2612 -6.5578 19 1 7.3534 0.6557 -8.0228 20 1 9.3162 -0.4145 -7.0838 21 8 6.8314 1.8638 -2.5776 22 7 5.4974 1.0447 0.5714 23 7 4.2588 0.8446 0.8555 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.9787 2.6724 -1.7360 32 1 7.8156 4.1523 -1.6436 33 1 6.0388 4.2511 -1.6118 34 1 6.9507 4.1271 -0.0882 35 1 7.7576 0.9736 0.2605 36 1 8.7141 2.4380 -0.1272 37 1 9.8541 1.0210 -1.6101 38 1 8.5043 -0.1612 -1.6561 39 1 7.0006 2.6145 -6.3485 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714988338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:06 Heat of formation + Delta-G solvation = 42.463365 kcal Electronic energy + Delta-G solvation = -20530.906757 eV Core-core repulsion = 17475.648656 eV Total energy + Delta-G solvation = -3055.258100 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.89494 -38.43061 -35.97496 -33.14030 -32.39946 -31.49584 -30.77939 -29.13043 -27.15532 -26.53230 -23.88858 -22.85523 -21.90852 -21.19856 -19.98364 -19.16683 -17.15262 -16.50410 -16.22605 -15.35180 -15.00841 -14.70889 -14.40189 -14.14216 -13.76439 -13.47885 -12.79143 -12.77652 -12.50619 -12.27793 -12.05154 -11.72019 -11.61498 -11.50604 -11.23978 -11.06000 -10.88911 -10.68733 -10.55431 -10.38094 -10.07138 -9.95586 -9.73177 -9.58576 -9.10724 -8.72947 -8.56789 -8.04603 -6.02255 -4.13474 1.94576 2.56264 2.96969 3.32848 3.36387 3.40025 4.31827 4.42387 4.52237 4.60701 4.83284 4.99367 5.07764 5.17874 5.28550 5.34386 5.44625 5.64981 5.69515 5.71681 5.74330 5.83458 5.93311 6.04233 6.10628 6.24320 6.28108 6.36731 6.61136 6.67897 6.80204 6.81481 6.90674 6.95123 7.06715 7.56627 7.89898 8.26299 8.60596 8.89568 8.98485 9.56516 11.05702 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.018097 B = 0.005693 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.883677 B = 4917.170232 C = 5827.901548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.118 3.882 4 N -0.299 5.299 5 C -0.031 4.031 6 C 0.008 3.992 7 C 0.174 3.826 8 C -0.148 4.148 9 C -0.144 4.144 10 C -0.147 4.147 11 C 0.210 3.790 12 H 0.031 0.969 13 C -0.526 4.526 14 H 0.063 0.937 15 C 0.077 3.923 16 N -0.866 5.866 17 Si 0.892 3.108 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.275 1.275 21 O -0.345 6.345 22 N -0.263 5.263 23 N -0.099 5.099 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.189 0.811 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.831 1.419 9.548 14.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C -0.003 4.003 4 N -0.093 5.093 5 C -0.181 4.181 6 C -0.130 4.130 7 C 0.131 3.869 8 C -0.206 4.206 9 C -0.182 4.182 10 C -0.185 4.185 11 C 0.155 3.845 12 H 0.049 0.951 13 C -0.563 4.563 14 H 0.081 0.919 15 C -0.128 4.128 16 N -0.502 5.502 17 Si 0.719 3.281 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.200 1.200 21 O -0.264 6.264 22 N -0.131 5.131 23 N -0.078 5.078 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.206 0.794 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.082 0.653 10.541 15.309 hybrid contribution -0.160 0.154 -1.748 1.762 sum -11.242 0.807 8.793 14.295 Atomic orbital electron populations 1.21696 0.94096 1.02663 1.02164 1.21823 0.96707 0.94804 1.04369 1.22109 0.73400 0.99962 1.04845 1.47309 1.08693 1.33886 1.19457 1.23401 0.91005 1.04740 0.98930 1.21972 0.95224 1.00277 0.95493 1.19926 0.88125 0.92638 0.86176 1.22160 1.02798 0.95166 1.00489 1.22943 0.96043 0.99985 0.99262 1.23190 0.98955 1.00185 0.96133 1.20697 0.78921 0.94121 0.90734 0.95098 1.20996 1.42656 1.00666 0.91984 0.91873 1.25069 0.93966 0.94924 0.98842 1.70013 1.39078 1.16850 1.24287 0.86680 0.78510 0.81059 0.81851 1.20145 1.21184 1.20009 1.89284 1.30911 1.86273 1.19908 1.74934 1.09098 1.14741 1.14276 1.78142 0.96513 1.17854 1.15263 0.92263 0.92251 0.91782 0.90858 0.90081 0.88746 0.87857 0.79414 0.91506 0.92473 0.93108 0.90191 0.91883 0.92194 0.91882 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.14 -1.30 6.06 -26.73 -0.16 -1.46 16 3 C 0.12 1.15 6.45 -4.04 -0.03 1.13 16 4 N -0.30 -4.54 3.44 -61.26 -0.21 -4.75 16 5 C -0.03 -0.53 11.38 -17.04 -0.19 -0.72 16 6 C 0.01 0.16 5.88 -82.78 -0.49 -0.33 16 7 C 0.17 3.67 1.09 -91.20 -0.10 3.57 16 8 C -0.15 -2.71 8.54 37.16 0.32 -2.39 16 9 C -0.14 -2.90 6.25 -25.20 -0.16 -3.05 16 10 C -0.15 -3.25 6.55 -24.72 -0.16 -3.42 16 11 C 0.21 5.50 3.03 -26.83 -0.08 5.42 16 12 H 0.03 0.86 8.11 -51.93 -0.42 0.43 16 13 C -0.53 -14.95 8.81 -34.44 -0.30 -15.25 16 14 H 0.06 1.76 7.77 -52.49 -0.41 1.35 16 15 C 0.08 2.19 5.44 -17.82 -0.10 2.10 16 16 N -0.87 -25.32 13.13 55.43 0.73 -24.59 16 17 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 O -0.34 -8.96 10.32 -35.23 -0.36 -9.32 16 22 N -0.26 -5.32 11.01 33.29 0.37 -4.95 16 23 N -0.10 -1.78 12.91 60.35 0.78 -1.00 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 0.78 8.07 -51.93 -0.42 0.36 16 31 H 0.19 2.83 8.06 -52.49 -0.42 2.40 16 32 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 33 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.60 6.67 -51.93 -0.35 1.26 16 36 H 0.06 1.12 7.70 -51.93 -0.40 0.72 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.44 8.04 -51.93 -0.42 1.02 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 325.13 15.07 4.90 4.90 Total: -1.00 -32.89 325.13 -6.10 -38.99 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.19 Total: -0.67 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -1.08 Total: -15.02 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 1.66 Total: -35.30 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.36 Total: -9.32 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.89 -6.10 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714988338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.454 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds