Wall clock time and date at job start Mon Mar 30 2020 05:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46950 * 2 1 4 4 N 1.46503 * 109.47010 * 179.97438 * 3 2 1 5 5 C 1.35317 * 125.86318 * 125.32275 * 4 3 2 6 6 C 1.35350 * 106.17056 * 180.12149 * 5 4 3 7 7 C 1.50700 * 126.74903 * 179.85481 * 6 5 4 8 8 C 1.52997 * 109.99390 * 63.63262 * 7 6 5 9 9 C 1.54102 * 109.87865 * 184.71287 * 7 6 5 10 10 C 1.54817 * 104.18731 * 121.45518 * 9 7 6 11 11 C 1.54991 * 102.09285 * 20.87902 * 10 9 7 12 12 H 1.09001 * 110.61405 * 81.47664 * 11 10 9 13 13 C 1.50694 * 110.62094 * 204.47354 * 11 10 9 14 14 H 1.07998 * 119.99812 * 0.02562 * 13 11 10 15 15 C 1.37885 * 120.00142 * 180.02562 * 13 11 10 16 16 N 1.31511 * 119.99619 * 0.02562 * 15 13 11 17 17 Si 1.86792 * 119.99883 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47623 * 60.00076 * 17 15 13 19 19 H 1.48506 * 109.47036 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46966 * 299.99877 * 17 15 13 21 21 O 1.43740 * 109.88088 * 302.54578 * 7 6 5 22 22 N 1.33766 * 106.49890 * 359.59412 * 6 5 4 23 23 N 1.28637 * 108.88529 * 0.26601 * 22 6 5 24 24 H 1.09001 * 109.47069 * 299.99686 * 1 2 3 25 25 H 1.09006 * 109.47410 * 59.99525 * 1 2 3 26 26 H 1.08998 * 109.47043 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46638 * 239.99999 * 2 1 3 28 28 H 1.08999 * 109.46598 * 120.00273 * 2 1 3 29 29 H 1.09001 * 109.46977 * 60.00258 * 3 2 1 30 30 H 1.08996 * 109.47425 * 300.00322 * 3 2 1 31 31 H 1.07997 * 126.91513 * 359.97438 * 5 4 3 32 32 H 1.08992 * 109.47651 * 181.08419 * 8 7 6 33 33 H 1.09002 * 109.46680 * 301.08309 * 8 7 6 34 34 H 1.09002 * 109.47170 * 61.08197 * 8 7 6 35 35 H 1.09004 * 110.48756 * 2.78023 * 9 7 6 36 36 H 1.08996 * 110.49165 * 240.13192 * 9 7 6 37 37 H 1.08996 * 110.90849 * 139.08031 * 10 9 7 38 38 H 1.09004 * 110.90250 * 262.68455 * 10 9 7 39 39 H 0.96997 * 119.99858 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2981 2.0764 -0.8939 6 6 5.5723 1.8105 -0.5228 7 6 6.8284 2.2887 -1.2044 8 6 6.9146 3.8145 -1.1318 9 6 8.0629 1.6614 -0.5281 10 6 8.7731 0.8951 -1.6706 11 6 8.2046 1.5932 -2.9322 12 1 8.7397 2.5218 -3.1310 13 6 8.2737 0.6737 -4.1241 14 1 8.6807 -0.3207 -4.0160 15 6 7.8173 1.1021 -5.3527 16 7 7.3221 2.3133 -5.4844 17 14 7.9023 -0.0380 -6.8299 18 1 7.1055 -1.2612 -6.5578 19 1 7.3534 0.6557 -8.0228 20 1 9.3162 -0.4145 -7.0838 21 8 6.8314 1.8638 -2.5776 22 7 5.4974 1.0447 0.5714 23 7 4.2588 0.8446 0.8555 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.9787 2.6724 -1.7360 32 1 7.8156 4.1523 -1.6436 33 1 6.0388 4.2511 -1.6118 34 1 6.9507 4.1271 -0.0882 35 1 7.7576 0.9736 0.2605 36 1 8.7141 2.4380 -0.1272 37 1 9.8541 1.0210 -1.6101 38 1 8.5043 -0.1612 -1.6561 39 1 7.0006 2.6145 -6.3485 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714988338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:05 Heat of formation + Delta-G solvation = 21.408692 kcal Electronic energy + Delta-G solvation = -20531.819756 eV Core-core repulsion = 17475.648656 eV Total energy + Delta-G solvation = -3056.171100 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.24133 -40.18682 -36.95591 -35.01900 -33.67100 -33.09864 -32.55593 -30.64281 -28.52576 -27.95011 -25.63757 -24.01871 -23.33597 -22.39060 -21.76118 -20.60252 -18.78306 -18.20580 -17.41243 -16.85698 -16.71313 -16.19010 -15.75915 -15.66051 -15.25895 -14.49133 -14.39155 -14.35775 -13.61058 -13.54239 -13.47528 -13.19989 -12.90699 -12.77824 -12.69218 -12.42540 -12.36328 -12.19260 -12.10919 -12.03691 -11.79748 -11.56835 -11.28565 -11.06589 -10.92586 -10.70076 -10.17239 -9.98617 -8.15349 -6.34650 0.63090 1.41164 1.42493 1.46074 1.51156 1.52118 2.41517 2.96604 3.26400 3.49584 3.76144 3.82072 3.90623 4.06921 4.10173 4.16526 4.32692 4.40363 4.44420 4.47159 4.58305 4.67862 4.70281 4.79362 4.86290 4.90625 5.04259 5.08714 5.11093 5.16241 5.21614 5.28724 5.33978 5.45069 5.56611 5.71803 5.76584 6.18883 6.60520 6.93745 7.39565 7.50554 8.92844 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.018097 B = 0.005693 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.883677 B = 4917.170232 C = 5827.901548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.105 3.895 4 N -0.283 5.283 5 C -0.027 4.027 6 C -0.020 4.020 7 C 0.166 3.834 8 C -0.140 4.140 9 C -0.136 4.136 10 C -0.140 4.140 11 C 0.207 3.793 12 H 0.008 0.992 13 C -0.555 4.555 14 H 0.059 0.941 15 C 0.029 3.971 16 N -0.897 5.897 17 Si 0.958 3.042 18 H -0.276 1.276 19 H -0.278 1.278 20 H -0.264 1.264 21 O -0.375 6.375 22 N -0.291 5.291 23 N -0.108 5.108 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.208 0.792 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.263 1.637 9.802 15.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C -0.013 4.013 4 N -0.078 5.078 5 C -0.178 4.178 6 C -0.159 4.159 7 C 0.124 3.876 8 C -0.198 4.198 9 C -0.174 4.174 10 C -0.178 4.178 11 C 0.152 3.848 12 H 0.026 0.974 13 C -0.592 4.592 14 H 0.077 0.923 15 C -0.174 4.174 16 N -0.534 5.534 17 Si 0.783 3.217 18 H -0.201 1.201 19 H -0.203 1.203 20 H -0.189 1.189 21 O -0.295 6.295 22 N -0.158 5.158 23 N -0.087 5.087 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.139 0.861 30 H 0.149 0.851 31 H 0.224 0.776 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.529 0.861 10.822 16.578 hybrid contribution 0.187 0.091 -1.766 1.778 sum -12.343 0.952 9.056 15.338 Atomic orbital electron populations 1.21664 0.91593 1.03228 1.03443 1.21788 0.98743 0.94173 1.02646 1.22691 0.70245 1.00809 1.07600 1.47704 1.10369 1.31868 1.17825 1.23649 0.90508 1.04403 0.99231 1.21936 0.95885 1.01736 0.96299 1.20144 0.89261 0.94210 0.84014 1.22083 1.02503 0.93225 1.02027 1.22911 0.95927 1.00319 0.98265 1.23078 1.00178 0.99206 0.95329 1.20529 0.79400 0.93069 0.91844 0.97430 1.21373 1.43230 1.00956 0.93622 0.92262 1.25866 0.93425 0.96432 1.01630 1.70125 1.39773 1.18395 1.25072 0.85634 0.78952 0.78832 0.78316 1.20118 1.20290 1.18877 1.89176 1.30436 1.86891 1.22959 1.74878 1.10327 1.15609 1.15011 1.78041 0.96287 1.18328 1.16035 0.90766 0.91158 0.91649 0.92910 0.91535 0.86070 0.85067 0.77555 0.92469 0.92080 0.90580 0.90273 0.89481 0.90322 0.93229 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.91 71.98 0.71 -0.79 16 2 C -0.13 -2.31 6.06 30.59 0.19 -2.13 16 3 C 0.11 1.78 6.45 86.38 0.56 2.33 16 4 N -0.28 -8.13 3.44 -347.73 -1.20 -9.32 16 5 C -0.03 -0.88 11.38 83.49 0.95 0.07 16 6 C -0.02 -0.80 5.88 41.60 0.24 -0.55 16 7 C 0.17 6.96 1.09 -11.17 -0.01 6.95 16 8 C -0.14 -5.02 8.54 71.98 0.61 -4.40 16 9 C -0.14 -5.42 6.25 31.59 0.20 -5.22 16 10 C -0.14 -6.27 6.55 31.90 0.21 -6.06 16 11 C 0.21 11.07 3.03 30.53 0.09 11.16 16 12 H 0.01 0.46 8.11 -2.39 -0.02 0.44 16 13 C -0.55 -32.16 8.81 25.60 0.23 -31.93 16 14 H 0.06 3.36 7.77 -2.91 -0.02 3.34 16 15 C 0.03 1.66 5.44 84.66 0.46 2.12 16 16 N -0.90 -53.09 13.13 21.45 0.28 -52.81 16 17 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 21 O -0.38 -19.82 10.32 -148.98 -1.54 -21.36 16 22 N -0.29 -11.69 11.01 -48.60 -0.54 -12.22 16 23 N -0.11 -3.80 12.91 37.02 0.48 -3.32 16 24 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16 29 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.13 1.52 8.07 -2.39 -0.02 1.51 16 31 H 0.21 5.87 8.06 -2.91 -0.02 5.84 16 32 H 0.06 2.12 8.11 -2.39 -0.02 2.10 16 33 H 0.06 2.09 8.10 -2.39 -0.02 2.07 16 34 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.08 3.16 6.67 -2.39 -0.02 3.14 16 36 H 0.09 2.98 7.70 -2.39 -0.02 2.96 16 37 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 38 H 0.05 2.31 8.04 -2.38 -0.02 2.29 16 39 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -71.97 325.13 4.97 -67.00 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 1.02 Total: 14.29 kcal Atomic # 6 Polarization: -32.89 SS G_CDS: 4.44 Total: -28.45 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -0.97 Total: -77.68 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -1.54 Total: -21.36 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -71.97 4.97 -67.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714988338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.410 kcal (2) G-P(sol) polarization free energy of solvation -71.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds