Wall clock time and date at job start Mon Mar 30 2020 04:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46983 * 2 1 4 4 N 1.30504 * 125.64940 * 90.02475 * 3 2 1 5 5 C 1.34120 * 109.25474 * 179.73737 * 4 3 2 6 6 C 1.50707 * 125.98686 * 179.97438 * 5 4 3 7 7 C 1.34663 * 108.02403 * 359.97438 * 5 4 3 8 8 N 1.35042 * 125.65148 * 269.71828 * 3 2 1 9 9 C 1.46500 * 126.39374 * 0.25845 * 8 3 2 10 10 C 1.50697 * 109.46956 * 85.00691 * 9 8 3 11 11 O 1.21281 * 120.00222 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00102 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99918 * 359.97438 * 12 10 9 14 14 C 1.46497 * 119.99977 * 179.97438 * 12 10 9 15 15 C 1.50701 * 109.47142 * 89.99560 * 14 12 10 16 16 H 1.08000 * 120.00022 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99895 * 180.02562 * 15 14 12 18 18 N 1.31509 * 119.99774 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99822 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47125 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47144 * 119.99551 * 19 17 15 22 22 H 1.48500 * 109.46846 * 239.99808 * 19 17 15 23 23 H 1.08997 * 109.46924 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47548 * 300.00004 * 1 2 3 25 25 H 1.09005 * 109.47177 * 60.00361 * 1 2 3 26 26 H 1.08998 * 109.47108 * 240.00154 * 2 1 3 27 27 H 1.09005 * 109.47177 * 119.99638 * 2 1 3 28 28 H 1.09000 * 109.47147 * 90.02316 * 6 5 4 29 29 H 1.09001 * 109.46955 * 210.02066 * 6 5 4 30 30 H 1.08996 * 109.47090 * 330.02068 * 6 5 4 31 31 H 1.08005 * 126.59404 * 180.02562 * 7 5 4 32 32 H 1.08999 * 109.46910 * 205.00329 * 9 8 3 33 33 H 1.08995 * 109.47420 * 325.00500 * 9 8 3 34 34 H 1.08995 * 109.47133 * 90.00148 * 13 12 10 35 35 H 1.09002 * 109.46801 * 210.00306 * 13 12 10 36 36 H 1.09000 * 109.46962 * 330.00128 * 13 12 10 37 37 H 1.08997 * 109.47416 * 209.99950 * 14 12 10 38 38 H 1.09004 * 109.47427 * 329.99653 * 14 12 10 39 39 H 0.97002 * 119.99622 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2862 2.1378 1.0605 5 6 2.7204 3.3490 0.6819 6 6 3.1200 4.4739 1.6018 7 6 2.7367 3.3839 -0.6642 8 7 2.2997 2.1612 -1.0973 9 6 2.1506 1.7349 -2.4910 10 6 0.7271 1.9546 -2.9339 11 8 -0.0833 2.4209 -2.1614 12 7 0.3542 1.6320 -4.1883 13 6 1.3329 1.0682 -5.1213 14 6 -1.0298 1.8451 -4.6187 15 6 -1.1669 3.2274 -5.2032 16 1 -0.3088 3.8815 -5.2498 17 6 -2.3879 3.6569 -5.6785 18 7 -3.4327 2.8602 -5.6221 19 14 -2.5577 5.3700 -6.4037 20 1 -1.2447 6.0619 -6.3518 21 1 -3.0084 5.2677 -7.8149 22 1 -3.5550 6.1426 -5.6202 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.1841 4.3993 1.8260 29 1 2.9169 5.4290 1.1174 30 1 2.5481 4.4070 2.5273 31 1 3.0366 4.2166 -1.2831 32 1 2.8217 2.3169 -3.1227 33 1 2.3983 0.6768 -2.5758 34 1 1.3315 -0.0184 -5.0366 35 1 1.0700 1.3537 -6.1399 36 1 2.3252 1.4501 -4.8815 37 1 -1.2941 1.1039 -5.3728 38 1 -1.6963 1.7452 -3.7619 39 1 -4.2915 3.1622 -5.9568 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715091127.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:04 Heat of formation + Delta-G solvation = 19.522614 kcal Electronic energy + Delta-G solvation = -20517.880137 eV Core-core repulsion = 17461.627251 eV Total energy + Delta-G solvation = -3056.252886 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.98655 -39.03570 -35.07803 -34.20008 -33.52210 -32.67653 -30.39420 -28.90562 -27.44605 -26.17659 -25.57481 -23.48072 -22.72128 -20.25042 -19.88712 -18.59716 -17.00084 -16.64663 -16.46867 -15.26997 -15.19301 -14.78119 -14.37326 -14.22180 -14.01139 -13.39079 -13.05483 -12.97679 -12.78462 -12.54048 -12.32574 -12.10516 -12.03981 -11.96138 -11.84312 -11.31323 -11.30113 -10.97088 -10.83586 -10.69246 -10.25579 -9.76475 -9.72290 -9.68016 -8.89572 -8.52470 -7.94833 -7.83343 -6.13421 -4.18726 2.20342 2.88289 3.09410 3.23989 3.31418 3.32311 3.35466 3.79595 4.36909 4.51620 4.74624 4.82027 4.88755 4.97628 5.21751 5.27951 5.38217 5.44170 5.46291 5.51597 5.68414 5.73331 5.81377 5.96329 6.03352 6.03677 6.07012 6.26438 6.53646 6.56597 6.85657 7.01662 7.29351 7.33956 7.40569 7.81892 8.11491 8.17562 8.35590 8.73444 8.88925 9.46805 10.94791 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.021377 B = 0.005296 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.516638 B = 5285.866895 C = 5760.679922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.035 4.035 3 C 0.225 3.775 4 N -0.492 5.492 5 C -0.006 4.006 6 C -0.062 4.062 7 C -0.048 4.048 8 N -0.435 5.435 9 C 0.082 3.918 10 C 0.487 3.513 11 O -0.516 6.516 12 N -0.597 5.597 13 C 0.079 3.921 14 C 0.246 3.754 15 C -0.529 4.529 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.893 5.893 19 Si 0.899 3.101 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.282 1.282 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.169 0.831 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.035 0.965 38 H 0.044 0.956 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.055 -4.819 5.519 15.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.074 4.074 3 C -0.038 4.038 4 N -0.212 5.212 5 C -0.135 4.135 6 C -0.120 4.120 7 C -0.180 4.180 8 N -0.117 5.117 9 C -0.045 4.045 10 C 0.270 3.730 11 O -0.391 6.391 12 N -0.331 5.331 13 C -0.066 4.066 14 C 0.128 3.872 15 C -0.568 4.568 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.208 1.208 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.186 0.814 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.304 -4.870 6.528 15.599 hybrid contribution -0.079 1.313 -1.624 2.090 sum 13.225 -3.557 4.904 14.547 Atomic orbital electron populations 1.21803 0.93367 1.01779 1.04054 1.19933 0.97053 0.87286 1.03101 1.23099 1.03005 0.96573 0.81081 1.70069 1.18897 1.04009 1.28178 1.20572 1.06367 0.94831 0.91709 1.19957 1.00658 0.93616 0.97733 1.22332 1.09895 0.89647 0.96173 1.44774 1.48582 1.12154 1.06140 1.21830 0.98269 1.03163 0.81224 1.20322 0.89139 0.80314 0.83177 1.90753 1.52635 1.43135 1.52613 1.48175 1.13436 1.61195 1.10248 1.21718 0.91642 0.97527 0.95669 1.19338 0.75152 0.96714 0.96031 1.21420 0.95560 0.99649 1.40166 0.92486 1.24934 0.95529 0.97710 0.95842 1.69932 1.00577 1.36158 1.46489 0.86435 0.78218 0.84118 0.78612 1.19841 1.20857 1.20790 0.92197 0.92112 0.91083 0.91013 0.89168 0.91902 0.91589 0.91454 0.81358 0.86699 0.86948 0.93281 0.90241 0.92643 0.94736 0.93756 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.89 37.16 0.37 -1.88 16 2 C -0.03 -0.46 6.24 -27.88 -0.17 -0.64 16 3 C 0.22 3.71 7.14 -155.41 -1.11 2.60 16 4 N -0.49 -8.80 11.25 -7.07 -0.08 -8.88 16 5 C -0.01 -0.10 7.09 -82.86 -0.59 -0.69 16 6 C -0.06 -0.76 10.42 36.01 0.38 -0.39 16 7 C -0.05 -0.75 11.48 -16.56 -0.19 -0.94 16 8 N -0.43 -6.93 2.24 -115.19 -0.26 -7.19 16 9 C 0.08 1.13 4.92 -5.20 -0.03 1.11 16 10 C 0.49 9.39 7.44 -10.99 -0.08 9.31 16 11 O -0.52 -12.54 14.44 5.56 0.08 -12.46 16 12 N -0.60 -11.65 2.86 -182.96 -0.52 -12.17 16 13 C 0.08 1.07 10.24 59.85 0.61 1.69 16 14 C 0.25 6.17 5.16 -5.19 -0.03 6.15 16 15 C -0.53 -14.60 9.39 -34.44 -0.32 -14.92 16 16 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 19 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.07 1.30 6.15 -51.93 -0.32 0.98 16 26 H 0.07 0.79 7.16 -51.93 -0.37 0.42 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.17 2.20 8.06 -52.48 -0.42 1.78 16 32 H 0.12 1.28 7.40 -51.93 -0.38 0.90 16 33 H 0.11 1.19 7.17 -51.93 -0.37 0.81 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 36 H 0.05 0.57 6.44 -51.93 -0.33 0.24 16 37 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 38 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 328.88 15.07 4.96 4.96 Total: -1.00 -35.05 328.88 -7.30 -42.35 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.93 Total: -0.84 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -1.26 Total: 3.04 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.12 Total: -53.60 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.05 -7.30 -42.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715091127.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.876 kcal (2) G-P(sol) polarization free energy of solvation -35.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds