Wall clock time and date at job start Mon Mar 30 2020 04:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46983 * 2 1 4 4 N 1.30504 * 125.64940 * 90.02475 * 3 2 1 5 5 C 1.34120 * 109.25474 * 179.73737 * 4 3 2 6 6 C 1.50707 * 125.98686 * 179.97438 * 5 4 3 7 7 C 1.34663 * 108.02403 * 359.97438 * 5 4 3 8 8 N 1.35042 * 125.65148 * 269.71828 * 3 2 1 9 9 C 1.46500 * 126.39374 * 0.25845 * 8 3 2 10 10 C 1.50697 * 109.46956 * 85.00691 * 9 8 3 11 11 O 1.21281 * 120.00222 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00102 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99918 * 359.97438 * 12 10 9 14 14 C 1.46497 * 119.99977 * 179.97438 * 12 10 9 15 15 C 1.50701 * 109.47142 * 89.99560 * 14 12 10 16 16 H 1.08000 * 120.00022 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99895 * 180.02562 * 15 14 12 18 18 N 1.31509 * 119.99774 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99822 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47125 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47144 * 119.99551 * 19 17 15 22 22 H 1.48500 * 109.46846 * 239.99808 * 19 17 15 23 23 H 1.08997 * 109.46924 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47548 * 300.00004 * 1 2 3 25 25 H 1.09005 * 109.47177 * 60.00361 * 1 2 3 26 26 H 1.08998 * 109.47108 * 240.00154 * 2 1 3 27 27 H 1.09005 * 109.47177 * 119.99638 * 2 1 3 28 28 H 1.09000 * 109.47147 * 90.02316 * 6 5 4 29 29 H 1.09001 * 109.46955 * 210.02066 * 6 5 4 30 30 H 1.08996 * 109.47090 * 330.02068 * 6 5 4 31 31 H 1.08005 * 126.59404 * 180.02562 * 7 5 4 32 32 H 1.08999 * 109.46910 * 205.00329 * 9 8 3 33 33 H 1.08995 * 109.47420 * 325.00500 * 9 8 3 34 34 H 1.08995 * 109.47133 * 90.00148 * 13 12 10 35 35 H 1.09002 * 109.46801 * 210.00306 * 13 12 10 36 36 H 1.09000 * 109.46962 * 330.00128 * 13 12 10 37 37 H 1.08997 * 109.47416 * 209.99950 * 14 12 10 38 38 H 1.09004 * 109.47427 * 329.99653 * 14 12 10 39 39 H 0.97002 * 119.99622 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2862 2.1378 1.0605 5 6 2.7204 3.3490 0.6819 6 6 3.1200 4.4739 1.6018 7 6 2.7367 3.3839 -0.6642 8 7 2.2997 2.1612 -1.0973 9 6 2.1506 1.7349 -2.4910 10 6 0.7271 1.9546 -2.9339 11 8 -0.0833 2.4209 -2.1614 12 7 0.3542 1.6320 -4.1883 13 6 1.3329 1.0682 -5.1213 14 6 -1.0298 1.8451 -4.6187 15 6 -1.1669 3.2274 -5.2032 16 1 -0.3088 3.8815 -5.2498 17 6 -2.3879 3.6569 -5.6785 18 7 -3.4327 2.8602 -5.6221 19 14 -2.5577 5.3700 -6.4037 20 1 -1.2447 6.0619 -6.3518 21 1 -3.0084 5.2677 -7.8149 22 1 -3.5550 6.1426 -5.6202 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.1841 4.3993 1.8260 29 1 2.9169 5.4290 1.1174 30 1 2.5481 4.4070 2.5273 31 1 3.0366 4.2166 -1.2831 32 1 2.8217 2.3169 -3.1227 33 1 2.3983 0.6768 -2.5758 34 1 1.3315 -0.0184 -5.0366 35 1 1.0700 1.3537 -6.1399 36 1 2.3252 1.4501 -4.8815 37 1 -1.2941 1.1039 -5.3728 38 1 -1.6963 1.7452 -3.7619 39 1 -4.2915 3.1622 -5.9568 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715091127.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:04 Heat of formation + Delta-G solvation = -3.197332 kcal Electronic energy + Delta-G solvation = -20518.865347 eV Core-core repulsion = 17461.627251 eV Total energy + Delta-G solvation = -3057.238097 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.15603 -40.55477 -36.69896 -35.41918 -34.81210 -34.54858 -31.50204 -30.50159 -28.87661 -27.39957 -26.98025 -24.96233 -24.24717 -21.40210 -21.21331 -19.95066 -18.73762 -18.28069 -17.79924 -16.91777 -16.57797 -16.28617 -15.70182 -15.54892 -15.26871 -14.53546 -14.51342 -14.39058 -13.91307 -13.85885 -13.63392 -13.50083 -13.25439 -13.16109 -13.07467 -12.95942 -12.80662 -12.56769 -12.43759 -12.24575 -11.98592 -11.70498 -11.13630 -10.93352 -10.68163 -10.29291 -9.47286 -9.10844 -8.26114 -6.40533 0.99288 1.33612 1.36439 1.47159 1.67434 1.76807 2.12116 2.30333 2.44363 3.04415 3.44383 3.56104 3.73969 3.80833 3.99797 4.22248 4.32307 4.36290 4.42106 4.48673 4.64965 4.72668 4.86954 4.90440 4.91519 4.95265 4.99514 5.06736 5.17228 5.19878 5.32334 5.39938 5.51454 5.77872 5.89996 6.01905 6.22403 6.64379 6.71519 7.17048 7.23399 7.38270 8.81095 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.021377 B = 0.005296 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.516638 B = 5285.866895 C = 5760.679922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.033 4.033 3 C 0.211 3.789 4 N -0.526 5.526 5 C -0.029 4.029 6 C -0.059 4.059 7 C -0.060 4.060 8 N -0.441 5.441 9 C 0.093 3.907 10 C 0.480 3.520 11 O -0.578 6.578 12 N -0.603 5.603 13 C 0.070 3.930 14 C 0.262 3.738 15 C -0.541 4.541 16 H 0.054 0.946 17 C 0.008 3.992 18 N -0.928 5.928 19 Si 0.965 3.035 20 H -0.266 1.266 21 H -0.268 1.268 22 H -0.285 1.285 23 H 0.086 0.914 24 H 0.039 0.961 25 H 0.033 0.967 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.192 0.808 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.027 0.973 38 H -0.004 1.004 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.613 -4.899 4.546 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.071 4.071 3 C -0.051 4.051 4 N -0.247 5.247 5 C -0.157 4.157 6 C -0.117 4.117 7 C -0.192 4.192 8 N -0.123 5.123 9 C -0.032 4.032 10 C 0.267 3.733 11 O -0.458 6.458 12 N -0.335 5.335 13 C -0.071 4.071 14 C 0.140 3.860 15 C -0.580 4.580 16 H 0.072 0.928 17 C -0.191 4.191 18 N -0.568 5.568 19 Si 0.789 3.211 20 H -0.190 1.190 21 H -0.193 1.193 22 H -0.211 1.211 23 H 0.105 0.895 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.209 0.791 32 H 0.169 0.831 33 H 0.172 0.828 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.045 0.955 38 H 0.014 0.986 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.918 -4.970 5.527 17.568 hybrid contribution -0.894 1.298 -1.290 2.037 sum 15.024 -3.672 4.237 16.036 Atomic orbital electron populations 1.21710 0.94954 1.02542 1.01089 1.20073 0.95400 0.86233 1.05421 1.23673 1.02606 0.97659 0.81202 1.70060 1.20060 1.05127 1.29428 1.21225 1.06382 0.95226 0.92871 1.20035 1.01670 0.93082 0.96876 1.22811 1.09668 0.90250 0.96486 1.44950 1.48363 1.12207 1.06759 1.21987 0.94239 1.06392 0.80623 1.21290 0.91090 0.78701 0.82210 1.90731 1.55007 1.45811 1.54237 1.48134 1.12300 1.61380 1.11658 1.22079 0.91920 0.99338 0.93791 1.18741 0.78132 0.95585 0.93513 1.21721 0.95578 1.00687 1.39983 0.92811 1.25833 0.95267 1.01704 0.96305 1.70048 1.01121 1.38126 1.47482 0.85407 0.78230 0.79130 0.78283 1.19020 1.19300 1.21138 0.89520 0.94206 0.94802 0.88004 0.87464 0.90005 0.90197 0.92161 0.79131 0.83058 0.82796 0.90301 0.91346 0.88286 0.95498 0.98636 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 9.89 71.98 0.71 -3.59 16 2 C -0.03 -0.81 6.24 29.85 0.19 -0.62 16 3 C 0.21 6.73 7.14 138.13 0.99 7.72 16 4 N -0.53 -18.64 11.25 -176.28 -1.98 -20.63 16 5 C -0.03 -0.92 7.09 41.39 0.29 -0.63 16 6 C -0.06 -1.40 10.42 71.24 0.74 -0.65 16 7 C -0.06 -1.79 11.48 83.09 0.95 -0.84 16 8 N -0.44 -13.18 2.24 -518.35 -1.16 -14.34 16 9 C 0.09 2.25 4.92 85.63 0.42 2.67 16 10 C 0.48 18.12 7.44 87.66 0.65 18.77 16 11 O -0.58 -28.97 14.44 -3.03 -0.04 -29.01 16 12 N -0.60 -23.00 2.86 -851.14 -2.43 -25.43 16 13 C 0.07 1.70 10.24 127.77 1.31 3.01 16 14 C 0.26 13.51 5.16 85.63 0.44 13.95 16 15 C -0.54 -30.30 9.39 25.60 0.24 -30.06 16 16 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 17 C 0.01 0.45 5.46 84.66 0.46 0.92 16 18 N -0.93 -55.55 13.29 21.45 0.28 -55.26 16 19 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 23 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.03 1.26 6.15 -2.38 -0.01 1.25 16 26 H 0.10 1.88 7.16 -2.39 -0.02 1.86 16 27 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.19 4.54 8.06 -2.91 -0.02 4.51 16 32 H 0.15 2.59 7.40 -2.39 -0.02 2.57 16 33 H 0.15 2.44 7.17 -2.39 -0.02 2.42 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.82 8.07 -2.39 -0.02 1.80 16 36 H 0.10 1.53 6.44 -2.39 -0.02 1.52 16 37 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 38 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 39 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -81.40 328.88 5.12 -76.28 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.03 Total: 11.35 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 7.40 Total: 10.64 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -5.29 Total: -115.66 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.04 Total: -29.01 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -81.40 5.12 -76.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715091127.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.078 kcal (2) G-P(sol) polarization free energy of solvation -81.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds