Wall clock time and date at job start Mon Mar 30 2020 04:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34670 * 125.98790 * 2 1 4 4 N 1.36882 * 106.81632 * 180.11648 * 3 2 1 5 5 C 1.46500 * 126.39851 * 179.83779 * 4 3 2 6 6 C 1.52997 * 109.47473 * 264.69011 * 5 4 3 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.46490 * 120.00111 * 0.02562 * 9 7 6 11 11 C 1.46497 * 119.99566 * 180.02562 * 9 7 6 12 12 C 1.50707 * 109.47162 * 90.00410 * 11 9 7 13 13 H 1.07998 * 119.99576 * 359.97438 * 12 11 9 14 14 C 1.37873 * 120.00057 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99982 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47235 * 59.99855 * 16 14 12 18 18 H 1.48500 * 109.47168 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47142 * 299.99797 * 16 14 12 20 20 C 1.35042 * 107.20427 * 359.57731 * 4 3 2 21 21 C 1.50703 * 125.65124 * 180.22583 * 20 4 3 22 22 N 1.30495 * 108.70161 * 0.26556 * 20 4 3 23 23 H 1.08996 * 109.47125 * 270.33252 * 1 2 3 24 24 H 1.09001 * 109.47260 * 30.34078 * 1 2 3 25 25 H 1.09003 * 109.46641 * 150.33521 * 1 2 3 26 26 H 1.07999 * 126.59279 * 359.97178 * 3 2 1 27 27 H 1.09002 * 109.47129 * 144.68754 * 5 4 3 28 28 H 1.08998 * 109.46845 * 24.69560 * 5 4 3 29 29 H 1.09002 * 109.47153 * 59.99757 * 6 5 4 30 30 H 1.09001 * 109.46832 * 299.99948 * 6 5 4 31 31 H 1.08995 * 109.47620 * 89.99771 * 10 9 7 32 32 H 1.09006 * 109.47028 * 209.99878 * 10 9 7 33 33 H 1.09002 * 109.47109 * 329.99455 * 10 9 7 34 34 H 1.09000 * 109.47018 * 209.99971 * 11 9 7 35 35 H 1.09000 * 109.47828 * 330.00266 * 11 9 7 36 36 H 0.97001 * 119.99961 * 180.02562 * 15 14 12 37 37 H 1.09003 * 109.47074 * 90.00051 * 21 20 4 38 38 H 1.08989 * 109.47538 * 210.00295 * 21 20 4 39 39 H 1.09005 * 109.47272 * 330.00576 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2983 1.0897 0.0000 4 7 3.5912 0.6402 -0.0027 5 6 4.7996 1.4685 -0.0070 6 6 5.2921 1.6446 -1.4448 7 6 6.5347 2.4972 -1.4492 8 8 6.9826 2.9217 -0.4051 9 7 7.1489 2.7871 -2.6134 10 6 6.6082 2.2739 -3.8745 11 6 8.3572 3.6154 -2.6176 12 6 9.5718 2.7328 -2.4875 13 1 9.4552 1.6620 -2.4091 14 6 10.8317 3.2924 -2.4686 15 7 10.9736 4.5963 -2.5647 16 14 12.3372 2.1983 -2.3080 17 1 12.3833 1.2490 -3.4491 18 1 13.5621 3.0379 -2.3134 19 1 12.2632 1.4382 -1.0345 20 6 3.5449 -0.7095 0.0053 21 6 4.7386 -1.6293 0.0106 22 7 2.2952 -1.0852 0.0068 23 1 -0.3633 0.0060 1.0276 24 1 -0.3634 0.8869 -0.5191 25 1 -0.3633 -0.8930 -0.5086 26 1 1.9750 2.1201 -0.0004 27 1 5.5749 0.9831 0.5858 28 1 4.5724 2.4446 0.4215 29 1 4.5167 2.1300 -2.0375 30 1 5.5192 0.6684 -1.8732 31 1 5.8953 2.9903 -4.2825 32 1 7.4215 2.1257 -4.5850 33 1 6.1056 1.3236 -3.6943 34 1 8.4120 4.1733 -3.5525 35 1 8.3230 4.3123 -1.7802 36 1 11.8601 4.9899 -2.5517 37 1 5.0265 -1.8450 1.0396 38 1 4.4832 -2.5590 -0.4977 39 1 5.5697 -1.1491 -0.5061 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715095303.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:56 Heat of formation + Delta-G solvation = -6.989919 kcal Electronic energy + Delta-G solvation = -19822.410568 eV Core-core repulsion = 16765.008012 eV Total energy + Delta-G solvation = -3057.402556 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.11156 -40.72336 -36.76721 -35.98627 -34.74043 -33.21169 -32.01689 -30.10017 -29.53040 -27.46245 -26.82262 -25.50508 -23.94714 -21.39039 -20.75453 -20.07597 -18.71966 -18.29239 -17.26052 -16.92161 -16.79645 -16.57381 -15.98259 -15.36371 -15.04912 -14.56946 -14.34733 -14.02980 -13.99258 -13.89313 -13.64584 -13.55076 -13.46682 -13.28737 -13.16630 -12.84904 -12.82626 -12.72061 -12.50978 -12.36562 -12.20424 -11.73732 -10.93330 -10.79570 -10.65096 -10.47589 -9.47300 -9.12111 -8.23688 -6.38734 1.06047 1.37531 1.41067 1.48400 1.69244 1.74533 2.10014 2.32956 2.48171 3.06462 3.52430 3.58439 3.65140 3.73909 3.97685 4.22685 4.30281 4.41722 4.45014 4.56307 4.61824 4.68786 4.69550 4.72016 4.92867 4.93150 4.99579 4.99825 5.10676 5.19423 5.21150 5.42535 5.52876 5.79515 5.89994 6.03746 6.24177 6.65602 6.73788 7.16336 7.25073 7.40392 8.83319 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.033490 B = 0.003844 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.875211 B = 7281.796498 C = 7624.815478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.028 4.028 3 C -0.061 4.061 4 N -0.453 5.453 5 C 0.127 3.873 6 C -0.133 4.133 7 C 0.502 3.498 8 O -0.593 6.593 9 N -0.608 5.608 10 C 0.077 3.923 11 C 0.258 3.742 12 C -0.545 4.545 13 H 0.056 0.944 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.967 3.033 17 H -0.261 1.261 18 H -0.280 1.280 19 H -0.275 1.275 20 C 0.196 3.804 21 C -0.071 4.071 22 N -0.525 5.525 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.063 0.937 26 H 0.197 0.803 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.023 0.977 35 H 0.001 0.999 36 H 0.267 0.733 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.000 -8.925 0.560 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.156 4.156 3 C -0.193 4.193 4 N -0.135 5.135 5 C 0.004 3.996 6 C -0.174 4.174 7 C 0.291 3.709 8 O -0.475 6.475 9 N -0.339 5.339 10 C -0.065 4.065 11 C 0.137 3.863 12 C -0.583 4.583 13 H 0.074 0.926 14 C -0.191 4.191 15 N -0.569 5.569 16 Si 0.791 3.209 17 H -0.185 1.185 18 H -0.205 1.205 19 H -0.201 1.201 20 C -0.066 4.066 21 C -0.129 4.129 22 N -0.246 5.246 23 H 0.090 0.910 24 H 0.106 0.894 25 H 0.082 0.918 26 H 0.214 0.786 27 H 0.114 0.886 28 H 0.119 0.881 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.041 0.959 35 H 0.019 0.981 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.785 -9.265 1.049 19.201 hybrid contribution 1.415 0.848 0.089 1.652 sum -15.370 -8.417 1.138 17.560 Atomic orbital electron populations 1.20053 0.85960 1.03233 1.02616 1.21269 0.97865 0.88498 1.07965 1.22925 0.82549 1.01468 1.12333 1.45491 1.06995 1.06968 1.54047 1.21501 0.84796 0.96338 0.96952 1.21874 0.95290 1.01648 0.98554 1.20904 0.85657 0.81214 0.83172 1.90670 1.68231 1.55764 1.32810 1.48169 1.27329 1.50847 1.07530 1.21944 0.99564 1.00006 0.84982 1.18775 0.81606 0.90034 0.95876 1.21689 0.91934 0.93791 1.50923 0.92581 1.25861 1.02342 0.96486 0.94453 1.70042 1.24450 1.11599 1.50778 0.85475 0.77815 0.78571 0.79022 1.18501 1.20549 1.20088 1.23754 0.95609 0.82353 1.04864 1.20322 0.90839 0.97407 1.04367 1.70124 1.00650 1.31597 1.22250 0.91036 0.89418 0.91813 0.78633 0.88645 0.88095 0.86427 0.86811 0.91091 0.91456 0.88957 0.95901 0.98134 0.92381 0.89413 0.88468 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.03 10.42 71.24 0.74 -0.29 16 2 C -0.03 -0.66 7.09 41.39 0.29 -0.37 16 3 C -0.06 -1.32 11.48 83.09 0.95 -0.37 16 4 N -0.45 -10.56 2.75 -514.29 -1.42 -11.97 16 5 C 0.13 3.00 4.97 86.38 0.43 3.43 16 6 C -0.13 -3.20 4.58 29.85 0.14 -3.06 16 7 C 0.50 18.77 7.67 87.66 0.67 19.45 16 8 O -0.59 -28.01 15.56 -3.03 -0.05 -28.05 16 9 N -0.61 -24.11 2.86 -851.14 -2.43 -26.54 16 10 C 0.08 2.12 10.24 127.77 1.31 3.43 16 11 C 0.26 13.48 5.16 85.64 0.44 13.92 16 12 C -0.54 -30.49 9.39 25.60 0.24 -30.25 16 13 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 14 C 0.01 0.43 5.46 84.65 0.46 0.90 16 15 N -0.93 -55.31 13.29 21.45 0.28 -55.03 16 16 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 17 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 20 C 0.20 4.90 7.90 138.13 1.09 5.99 16 21 C -0.07 -1.35 10.04 71.24 0.72 -0.63 16 22 N -0.53 -14.78 11.25 -176.29 -1.98 -16.76 16 23 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.20 3.06 8.06 -2.91 -0.02 3.04 16 27 H 0.10 2.41 7.88 -2.39 -0.02 2.39 16 28 H 0.10 2.42 8.09 -2.39 -0.02 2.40 16 29 H 0.12 2.32 8.11 -2.39 -0.02 2.30 16 30 H 0.11 2.36 6.93 -2.39 -0.02 2.34 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 1.99 8.07 -2.38 -0.02 1.97 16 33 H 0.09 1.89 6.44 -2.39 -0.02 1.88 16 34 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 35 H 0.00 0.03 7.42 -2.39 -0.02 0.01 16 36 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.08 1.43 7.36 -2.38 -0.02 1.42 16 Total: -1.00 -74.88 332.36 4.95 -69.94 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 1.02 Total: 10.46 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 7.49 Total: 12.15 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -5.54 Total: -110.30 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.05 Total: -28.05 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -74.88 4.95 -69.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715095303.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.945 kcal (2) G-P(sol) polarization free energy of solvation -74.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds