Wall clock time and date at job start Mon Mar 30 2020 04:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00356 * 2 1 4 4 C 1.52998 * 109.47667 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47077 * 64.99853 * 4 3 2 6 6 C 1.36929 * 120.00161 * 83.58047 * 5 4 3 7 7 H 1.08007 * 119.99693 * 334.67430 * 6 5 4 8 8 C 1.38804 * 120.00380 * 154.95474 * 6 5 4 9 9 N 1.31623 * 119.99763 * 339.52118 * 8 6 5 10 10 Si 1.86802 * 120.00445 * 159.52635 * 8 6 5 11 11 H 1.48495 * 109.47194 * 89.99457 * 10 8 6 12 12 H 1.48499 * 109.47020 * 209.99886 * 10 8 6 13 13 H 1.48499 * 109.46683 * 329.99643 * 10 8 6 14 14 C 1.46505 * 119.99960 * 263.58011 * 5 4 3 15 15 C 1.50696 * 109.46977 * 273.55843 * 14 5 4 16 16 C 1.38918 * 121.01538 * 3.62442 * 15 14 5 17 17 C 1.38571 * 117.97215 * 179.78441 * 16 15 14 18 18 C 1.50698 * 120.07737 * 180.26397 * 17 16 15 19 19 N 1.31962 * 119.84710 * 0.49591 * 17 16 15 20 20 N 1.28347 * 122.17721 * 359.74369 * 19 17 16 21 21 C 1.31966 * 122.18314 * 0.02562 * 20 19 17 22 22 C 1.50698 * 120.07257 * 179.97438 * 21 20 19 23 23 H 1.09001 * 109.46752 * 60.00187 * 1 2 3 24 24 H 1.08998 * 109.47042 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46975 * 299.99799 * 1 2 3 26 26 H 1.09006 * 109.46790 * 59.99499 * 3 2 1 27 27 H 1.09004 * 109.46741 * 299.99932 * 3 2 1 28 28 H 1.09003 * 109.46633 * 305.00083 * 4 3 2 29 29 H 1.08996 * 109.47564 * 185.00017 * 4 3 2 30 30 H 0.97004 * 119.99795 * 180.02562 * 9 8 6 31 31 H 1.09003 * 109.47284 * 33.55721 * 14 5 4 32 32 H 1.08997 * 109.46948 * 153.55697 * 14 5 4 33 33 H 1.07997 * 121.01585 * 0.02562 * 16 15 14 34 34 H 1.09007 * 109.47320 * 270.23702 * 18 17 16 35 35 H 1.09004 * 109.46986 * 30.23476 * 18 17 16 36 36 H 1.09000 * 109.47650 * 150.23513 * 18 17 16 37 37 H 1.09002 * 109.46843 * 270.41209 * 22 21 20 38 38 H 1.08997 * 109.47529 * 30.41712 * 22 21 20 39 39 H 1.08998 * 109.46812 * 150.41677 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1395 1.3305 -2.3758 7 1 3.5877 2.2524 -2.4857 8 6 5.0101 0.9194 -3.3756 9 7 5.9597 0.0492 -3.1044 10 14 4.8344 1.6012 -5.1059 11 1 5.6562 2.8308 -5.2393 12 1 5.2977 0.5871 -6.0868 13 1 3.4094 1.9274 -5.3668 14 6 4.2408 -0.8756 -1.3033 15 6 5.6619 -1.1400 -0.8772 16 6 6.4823 -0.1073 -0.4411 17 6 7.7768 -0.4223 -0.0599 18 6 8.7055 0.6602 0.4265 19 7 8.1959 -1.6717 -0.1282 20 7 7.4394 -2.6251 -0.5358 21 6 6.1920 -2.4197 -0.9143 22 6 5.3459 -3.5744 -1.3854 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8515 0.5682 0.8410 29 1 3.9786 2.1764 0.0889 30 1 6.5685 -0.2378 -3.8031 31 1 3.5574 -1.3947 -0.6312 32 1 4.0935 -1.2366 -2.3212 33 1 6.1211 0.9095 -0.3967 34 1 9.2482 1.0809 -0.4201 35 1 8.1258 1.4449 0.9126 36 1 9.4143 0.2380 1.1388 37 1 5.4664 -3.6977 -2.4617 38 1 5.6603 -4.4862 -0.8777 39 1 4.2989 -3.3743 -1.1576 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720601235.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:21 Heat of formation + Delta-G solvation = 27.857953 kcal Electronic energy + Delta-G solvation = -21139.234770 eV Core-core repulsion = 18083.343332 eV Total energy + Delta-G solvation = -3055.891439 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.94525 -37.60059 -35.93416 -33.62596 -32.28931 -31.69405 -29.27934 -28.40848 -26.42761 -25.87026 -25.62865 -23.69095 -21.96692 -21.08629 -20.03560 -17.03786 -16.39808 -15.73297 -15.55588 -15.03894 -14.81891 -14.35325 -14.29164 -13.82436 -13.59109 -13.33029 -12.82984 -12.38047 -12.27436 -11.94330 -11.78426 -11.71269 -11.62035 -11.53373 -11.32432 -11.18730 -10.95061 -10.84581 -10.47198 -10.21771 -10.13979 -9.70628 -9.21904 -8.75074 -8.53900 -8.41607 -8.14767 -6.96817 -5.87738 -3.40783 2.09140 2.23975 3.28031 3.37994 3.38402 4.28425 4.37029 4.68090 4.99578 5.14175 5.26037 5.49001 5.57456 5.60703 5.63684 5.73603 5.82559 5.88298 5.94940 6.00490 6.05711 6.09948 6.16167 6.19889 6.27690 6.36173 6.42955 6.49995 6.61041 6.70881 6.73293 7.00006 7.29521 7.44789 7.55008 7.63215 7.66345 8.19437 8.99984 9.63944 9.87950 10.14503 11.08082 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.013034 B = 0.008987 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.649731 B = 3114.918058 C = 4019.780858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.380 6.380 3 C 0.042 3.958 4 C 0.146 3.854 5 N -0.584 5.584 6 C -0.262 4.262 7 H 0.068 0.932 8 C 0.011 3.989 9 N -0.888 5.888 10 Si 0.900 3.100 11 H -0.288 1.288 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.215 3.785 15 C -0.004 4.004 16 C -0.055 4.055 17 C 0.037 3.963 18 C -0.086 4.086 19 N -0.281 5.281 20 N -0.265 5.265 21 C 0.037 3.963 22 C -0.088 4.088 23 H 0.035 0.965 24 H 0.077 0.923 25 H 0.030 0.970 26 H 0.031 0.969 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.255 0.745 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.139 0.861 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.690 0.632 6.089 8.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C -0.037 4.037 4 C 0.019 3.981 5 N -0.304 5.304 6 C -0.391 4.391 7 H 0.086 0.914 8 C -0.188 4.188 9 N -0.530 5.530 10 Si 0.730 3.270 11 H -0.215 1.215 12 H -0.216 1.216 13 H -0.206 1.206 14 C 0.088 3.912 15 C -0.018 4.018 16 C -0.084 4.084 17 C -0.105 4.105 18 C -0.145 4.145 19 N -0.125 5.125 20 N -0.108 5.108 21 C -0.108 4.108 22 C -0.146 4.146 23 H 0.054 0.946 24 H 0.095 0.905 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.157 0.843 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.216 -0.650 6.181 7.510 hybrid contribution -1.367 1.776 -1.551 2.726 sum -5.583 1.126 4.630 7.340 Atomic orbital electron populations 1.22630 0.82860 1.01780 0.99083 1.87934 1.18073 1.28664 1.95163 1.23415 0.97761 0.84050 0.98449 1.20903 0.89887 0.97824 0.89449 1.43821 1.77434 1.02931 1.06264 1.19062 1.19456 1.05565 0.95028 0.91427 1.24939 0.95228 0.99376 0.99277 1.70023 1.16260 1.35174 1.31591 0.86350 0.77729 0.78106 0.84855 1.21473 1.21607 1.20612 1.19496 0.87707 0.84453 0.99585 1.21609 0.99931 0.91384 0.88870 1.21688 0.91952 1.00707 0.94051 1.22532 0.94744 0.94571 0.98686 1.20452 0.97900 0.95183 1.00950 1.72603 1.27992 0.98215 1.13720 1.72575 1.03269 1.25529 1.09423 1.22328 0.93715 0.95285 0.99458 1.20468 0.97908 0.94946 1.01311 0.94641 0.90466 0.95130 0.95069 0.93420 0.93406 0.91875 0.93433 0.93339 0.90316 0.84326 0.91137 0.91443 0.91510 0.91023 0.91635 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.38 -6.55 10.24 -35.23 -0.36 -6.91 16 3 C 0.04 0.70 6.24 37.16 0.23 0.93 16 4 C 0.15 2.69 5.18 -4.04 -0.02 2.67 16 5 N -0.58 -12.79 1.34 -174.61 -0.23 -13.02 16 6 C -0.26 -6.35 9.49 -15.07 -0.14 -6.50 16 7 H 0.07 1.63 7.91 -52.48 -0.42 1.22 16 8 C 0.01 0.28 4.85 -17.43 -0.08 0.20 16 9 N -0.89 -23.17 8.46 55.49 0.47 -22.70 16 10 Si 0.90 20.57 29.60 -169.99 -5.03 15.54 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 C 0.21 4.66 4.01 -5.19 -0.02 4.64 16 15 C 0.00 -0.09 4.02 -104.25 -0.42 -0.51 16 16 C -0.06 -1.22 7.49 -39.21 -0.29 -1.52 16 17 C 0.04 0.80 6.86 -82.41 -0.57 0.23 16 18 C -0.09 -1.45 10.20 36.00 0.37 -1.08 16 19 N -0.28 -6.46 11.43 33.59 0.38 -6.07 16 20 N -0.27 -6.13 11.43 33.59 0.38 -5.74 16 21 C 0.04 0.81 6.86 -82.41 -0.57 0.24 16 22 C -0.09 -1.54 9.80 36.00 0.35 -1.19 16 23 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.86 8.02 -51.93 -0.42 0.44 16 29 H 0.06 1.11 8.09 -51.93 -0.42 0.69 16 30 H 0.25 6.87 8.31 -40.82 -0.34 6.54 16 31 H 0.05 1.00 7.31 -51.93 -0.38 0.62 16 32 H 0.08 1.89 7.06 -51.93 -0.37 1.52 16 33 H 0.14 3.14 6.46 -52.49 -0.34 2.80 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.13 6.85 -51.93 -0.36 0.77 16 LS Contribution 321.23 15.07 4.84 4.84 Total: -1.00 -28.65 321.23 -5.65 -34.30 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.05 Total: 0.10 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -0.05 Total: -0.32 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 1.00 Total: -47.54 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.36 Total: -6.91 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.65 -5.65 -34.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720601235.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.153 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds