Wall clock time and date at job start Mon Mar 30 2020 04:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00356 * 2 1 4 4 C 1.52998 * 109.47667 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47077 * 64.99853 * 4 3 2 6 6 C 1.36929 * 120.00161 * 83.58047 * 5 4 3 7 7 H 1.08007 * 119.99693 * 334.67430 * 6 5 4 8 8 C 1.38804 * 120.00380 * 154.95474 * 6 5 4 9 9 N 1.31623 * 119.99763 * 339.52118 * 8 6 5 10 10 Si 1.86802 * 120.00445 * 159.52635 * 8 6 5 11 11 H 1.48495 * 109.47194 * 89.99457 * 10 8 6 12 12 H 1.48499 * 109.47020 * 209.99886 * 10 8 6 13 13 H 1.48499 * 109.46683 * 329.99643 * 10 8 6 14 14 C 1.46505 * 119.99960 * 263.58011 * 5 4 3 15 15 C 1.50696 * 109.46977 * 273.55843 * 14 5 4 16 16 C 1.38918 * 121.01538 * 3.62442 * 15 14 5 17 17 C 1.38571 * 117.97215 * 179.78441 * 16 15 14 18 18 C 1.50698 * 120.07737 * 180.26397 * 17 16 15 19 19 N 1.31962 * 119.84710 * 0.49591 * 17 16 15 20 20 N 1.28347 * 122.17721 * 359.74369 * 19 17 16 21 21 C 1.31966 * 122.18314 * 0.02562 * 20 19 17 22 22 C 1.50698 * 120.07257 * 179.97438 * 21 20 19 23 23 H 1.09001 * 109.46752 * 60.00187 * 1 2 3 24 24 H 1.08998 * 109.47042 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46975 * 299.99799 * 1 2 3 26 26 H 1.09006 * 109.46790 * 59.99499 * 3 2 1 27 27 H 1.09004 * 109.46741 * 299.99932 * 3 2 1 28 28 H 1.09003 * 109.46633 * 305.00083 * 4 3 2 29 29 H 1.08996 * 109.47564 * 185.00017 * 4 3 2 30 30 H 0.97004 * 119.99795 * 180.02562 * 9 8 6 31 31 H 1.09003 * 109.47284 * 33.55721 * 14 5 4 32 32 H 1.08997 * 109.46948 * 153.55697 * 14 5 4 33 33 H 1.07997 * 121.01585 * 0.02562 * 16 15 14 34 34 H 1.09007 * 109.47320 * 270.23702 * 18 17 16 35 35 H 1.09004 * 109.46986 * 30.23476 * 18 17 16 36 36 H 1.09000 * 109.47650 * 150.23513 * 18 17 16 37 37 H 1.09002 * 109.46843 * 270.41209 * 22 21 20 38 38 H 1.08997 * 109.47529 * 30.41712 * 22 21 20 39 39 H 1.08998 * 109.46812 * 150.41677 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1395 1.3305 -2.3758 7 1 3.5877 2.2524 -2.4857 8 6 5.0101 0.9194 -3.3756 9 7 5.9597 0.0492 -3.1044 10 14 4.8344 1.6012 -5.1059 11 1 5.6562 2.8308 -5.2393 12 1 5.2977 0.5871 -6.0868 13 1 3.4094 1.9274 -5.3668 14 6 4.2408 -0.8756 -1.3033 15 6 5.6619 -1.1400 -0.8772 16 6 6.4823 -0.1073 -0.4411 17 6 7.7768 -0.4223 -0.0599 18 6 8.7055 0.6602 0.4265 19 7 8.1959 -1.6717 -0.1282 20 7 7.4394 -2.6251 -0.5358 21 6 6.1920 -2.4197 -0.9143 22 6 5.3459 -3.5744 -1.3854 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8515 0.5682 0.8410 29 1 3.9786 2.1764 0.0889 30 1 6.5685 -0.2378 -3.8031 31 1 3.5574 -1.3947 -0.6312 32 1 4.0935 -1.2366 -2.3212 33 1 6.1211 0.9095 -0.3967 34 1 9.2482 1.0809 -0.4201 35 1 8.1258 1.4449 0.9126 36 1 9.4143 0.2380 1.1388 37 1 5.4664 -3.6977 -2.4617 38 1 5.6603 -4.4862 -0.8777 39 1 4.2989 -3.3743 -1.1576 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720601235.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:21 Heat of formation + Delta-G solvation = 11.466986 kcal Electronic energy + Delta-G solvation = -21139.945536 eV Core-core repulsion = 18083.343332 eV Total energy + Delta-G solvation = -3056.602204 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.62465 -38.95883 -37.53042 -35.21019 -33.96269 -33.45444 -30.75619 -29.92517 -28.07741 -27.24542 -27.05863 -25.31184 -23.57773 -22.66848 -21.70967 -18.76540 -18.02798 -17.16481 -17.00127 -16.62178 -16.34572 -15.99371 -15.71781 -15.43101 -15.23993 -14.92243 -14.23275 -13.87831 -13.76801 -13.40674 -13.29647 -13.20443 -13.14268 -12.96663 -12.81243 -12.68859 -12.59109 -12.48669 -12.12120 -11.98385 -11.73472 -11.36936 -10.64661 -10.39676 -10.25741 -10.10113 -9.84790 -8.75133 -7.77804 -5.29976 0.43517 0.50948 1.44202 1.50851 1.55817 2.50763 2.99526 3.11739 3.31303 3.44343 3.56614 4.05102 4.10066 4.21374 4.40504 4.48171 4.54260 4.55219 4.60514 4.67022 4.70078 4.75872 4.79003 4.83060 4.88012 4.92998 4.98327 5.04368 5.06832 5.22264 5.26707 5.27688 5.64169 5.68553 5.74116 5.89799 6.30835 6.47197 7.12680 7.83897 8.17379 8.30996 9.13334 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.013034 B = 0.008987 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.649731 B = 3114.918058 C = 4019.780858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.051 3.949 4 C 0.144 3.856 5 N -0.594 5.594 6 C -0.254 4.254 7 H 0.068 0.932 8 C -0.030 4.030 9 N -0.902 5.902 10 Si 0.948 3.052 11 H -0.291 1.291 12 H -0.304 1.304 13 H -0.276 1.276 14 C 0.227 3.773 15 C -0.013 4.013 16 C -0.063 4.063 17 C 0.032 3.968 18 C -0.083 4.083 19 N -0.302 5.302 20 N -0.286 5.286 21 C 0.029 3.971 22 C -0.083 4.083 23 H 0.035 0.965 24 H 0.091 0.909 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.035 0.965 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.239 0.761 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.132 0.868 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.758 1.161 7.056 9.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.327 6.327 3 C -0.028 4.028 4 C 0.018 3.982 5 N -0.314 5.314 6 C -0.384 4.384 7 H 0.086 0.914 8 C -0.227 4.227 9 N -0.547 5.547 10 Si 0.779 3.221 11 H -0.218 1.218 12 H -0.231 1.231 13 H -0.202 1.202 14 C 0.100 3.900 15 C -0.027 4.027 16 C -0.092 4.092 17 C -0.111 4.111 18 C -0.141 4.141 19 N -0.146 5.146 20 N -0.128 5.128 21 C -0.116 4.116 22 C -0.142 4.142 23 H 0.053 0.947 24 H 0.110 0.890 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.150 0.850 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.310 -0.109 7.173 8.925 hybrid contribution -1.115 1.637 -1.793 2.672 sum -6.424 1.527 5.379 8.517 Atomic orbital electron populations 1.22818 0.80711 1.03139 1.00061 1.87879 1.20458 1.28944 1.95383 1.23213 0.96119 0.84186 0.99277 1.21052 0.91324 0.97909 0.87906 1.43940 1.77508 1.02923 1.07021 1.19229 1.18166 1.05307 0.95660 0.91404 1.25394 0.95615 1.00309 1.01358 1.70196 1.16878 1.36590 1.31007 0.85583 0.77477 0.76878 0.82160 1.21848 1.23131 1.20172 1.19298 0.87843 0.84595 0.98244 1.21739 1.00158 0.91820 0.88977 1.21705 0.92521 1.00328 0.94664 1.23113 0.95222 0.94994 0.97772 1.20547 0.97702 0.94414 1.01428 1.72554 1.28541 0.98897 1.14605 1.72515 1.03942 1.26131 1.10240 1.22847 0.93626 0.96409 0.98758 1.20531 0.98088 0.94323 1.01244 0.94657 0.89049 0.93067 0.92024 0.94685 0.93015 0.91217 0.95087 0.92146 0.92881 0.85008 0.90886 0.89315 0.89912 0.91105 0.89833 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.41 -13.17 10.24 -148.98 -1.52 -14.70 16 3 C 0.05 1.56 6.24 71.98 0.45 2.01 16 4 C 0.14 5.05 5.18 86.38 0.45 5.49 16 5 N -0.59 -25.47 1.34 -706.35 -0.95 -26.41 16 6 C -0.25 -12.13 9.49 84.03 0.80 -11.34 16 7 H 0.07 3.21 7.91 -2.91 -0.02 3.19 16 8 C -0.03 -1.50 4.85 84.86 0.41 -1.09 16 9 N -0.90 -47.51 8.46 21.65 0.18 -47.33 16 10 Si 0.95 42.50 29.60 68.60 2.03 44.53 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 13 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 14 C 0.23 9.78 4.01 85.63 0.34 10.12 16 15 C -0.01 -0.58 4.02 -19.62 -0.08 -0.66 16 16 C -0.06 -2.78 7.49 22.51 0.17 -2.61 16 17 C 0.03 1.37 6.86 42.62 0.29 1.66 16 18 C -0.08 -2.64 10.20 71.24 0.73 -1.91 16 19 N -0.30 -13.82 11.43 -47.64 -0.54 -14.37 16 20 N -0.29 -13.19 11.43 -47.64 -0.54 -13.73 16 21 C 0.03 1.27 6.86 42.62 0.29 1.56 16 22 C -0.08 -2.85 9.80 71.24 0.70 -2.15 16 23 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.05 1.77 8.02 -2.39 -0.02 1.75 16 29 H 0.07 2.33 8.09 -2.39 -0.02 2.31 16 30 H 0.24 13.15 8.31 -92.71 -0.77 12.38 16 31 H 0.06 2.43 7.31 -2.39 -0.02 2.41 16 32 H 0.05 2.56 7.06 -2.39 -0.02 2.54 16 33 H 0.13 5.92 6.46 -2.91 -0.02 5.90 16 34 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.09 2.42 8.09 -2.39 -0.02 2.41 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 38 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.08 2.62 6.85 -2.39 -0.02 2.60 16 Total: -1.00 -60.43 321.23 5.48 -54.96 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 1.02 Total: 14.03 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 5.80 Total: 3.02 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -1.85 Total: -101.84 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -1.52 Total: -14.70 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -60.43 5.48 -54.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720601235.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.423 kcal (2) G-P(sol) polarization free energy of solvation -60.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds