Wall clock time and date at job start Mon Mar 30 2020 04:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.46758 * 2 1 4 4 O 1.21284 * 120.00268 * 122.39439 * 3 2 1 5 5 N 1.34782 * 119.99621 * 302.39106 * 3 2 1 6 6 C 1.37098 * 120.00311 * 4.68784 * 5 3 2 7 7 H 1.08001 * 119.99741 * 343.89666 * 6 5 3 8 8 C 1.38942 * 120.00011 * 163.89798 * 6 5 3 9 9 N 1.31419 * 120.00096 * 1.16244 * 8 6 5 10 10 Si 1.86797 * 120.00091 * 181.16763 * 8 6 5 11 11 H 1.48496 * 109.47469 * 89.99618 * 10 8 6 12 12 H 1.48501 * 109.47453 * 209.99983 * 10 8 6 13 13 H 1.48504 * 109.46810 * 329.99621 * 10 8 6 14 14 C 1.46509 * 119.99834 * 184.69002 * 5 3 2 15 15 C 1.47204 * 109.46629 * 268.15619 * 14 5 3 16 16 N 5.33739 * 80.93708 * 2.76952 * 2 1 3 17 17 C 1.52993 * 109.47210 * 240.00060 * 2 1 3 18 18 C 1.53001 * 109.46887 * 299.99280 * 17 2 1 19 19 C 1.52994 * 109.47731 * 300.00192 * 18 17 2 20 20 C 1.53005 * 109.46821 * 59.99961 * 19 18 17 21 21 C 1.53000 * 109.47206 * 300.00155 * 20 19 18 22 22 H 1.09003 * 109.47183 * 299.99962 * 21 20 19 23 23 N 1.46899 * 109.47356 * 179.97438 * 21 20 19 24 24 H 1.09004 * 109.46865 * 173.93424 * 1 2 3 25 25 H 1.09001 * 109.47203 * 53.93728 * 1 2 3 26 26 H 1.08998 * 109.47466 * 293.93023 * 1 2 3 27 27 H 0.97002 * 119.99364 * 180.02562 * 9 8 6 28 28 H 1.08999 * 109.46935 * 28.15257 * 14 5 3 29 29 H 1.08988 * 109.47001 * 148.15402 * 14 5 3 30 30 H 1.08999 * 109.47676 * 59.99233 * 17 2 1 31 31 H 1.09002 * 109.47188 * 180.02562 * 17 2 1 32 32 H 1.09003 * 109.47016 * 60.00529 * 18 17 2 33 33 H 1.09006 * 109.47338 * 180.02562 * 18 17 2 34 34 H 1.08992 * 109.47791 * 179.97438 * 19 18 17 35 35 H 1.09003 * 109.47146 * 300.00257 * 19 18 17 36 36 H 1.08998 * 109.47705 * 60.00122 * 20 19 18 37 37 H 1.09002 * 109.47041 * 180.02562 * 20 19 18 38 38 H 1.00903 * 110.99849 * 59.99916 * 23 21 20 39 39 H 1.00905 * 110.99852 * 183.95171 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.7649 1.8051 0.8869 5 7 1.6673 2.2646 -0.9857 6 6 0.7641 1.8604 -1.9346 7 1 0.5419 0.8105 -2.0560 8 6 0.1346 2.8015 -2.7400 9 7 0.4220 4.0770 -2.6077 10 14 -1.1202 2.2537 -4.0106 11 1 -2.4724 2.2397 -3.3971 12 1 -1.1070 3.1965 -5.1579 13 1 -0.7788 0.8893 -4.4872 14 6 2.2358 3.6136 -1.0431 15 6 1.3629 4.5454 -0.3105 16 7 0.6893 5.2646 0.2547 17 6 2.0400 -0.7212 -1.2492 18 6 1.5302 -2.1637 -1.2491 19 6 2.0402 -2.8850 0.0001 20 6 1.5301 -2.1637 1.2494 21 6 2.0400 -0.7211 1.2493 22 1 3.1300 -0.7211 1.2494 23 7 1.5498 -0.0284 2.4484 24 1 -0.3633 -1.0220 -0.1086 25 1 -0.3634 0.6050 -0.8307 26 1 -0.3634 0.4168 0.9393 27 1 -0.0178 4.7340 -3.1698 28 1 3.2264 3.6100 -0.5883 29 1 2.3145 3.9307 -2.0828 30 1 1.6766 -0.2075 -2.1392 31 1 3.1301 -0.7216 -1.2489 32 1 0.4401 -2.1638 -1.2491 33 1 1.8939 -2.6778 -2.1388 34 1 1.6766 -3.9124 0.0005 35 1 3.1302 -2.8849 0.0002 36 1 0.4401 -2.1637 1.2494 37 1 1.8938 -2.6772 2.1394 38 1 1.8730 -0.4858 3.2877 39 1 1.8192 0.9440 2.4398 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829147523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:55 Heat of formation + Delta-G solvation = 5.958261 kcal Electronic energy + Delta-G solvation = -21852.241644 eV Core-core repulsion = 18795.400564 eV Total energy + Delta-G solvation = -3056.841080 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.22852 -37.55110 -35.63845 -34.50051 -32.93789 -32.01061 -31.35909 -28.23250 -27.33401 -25.88644 -24.90019 -22.38971 -21.51031 -19.65577 -18.41032 -17.79329 -16.33086 -15.99842 -15.09229 -14.84673 -14.58571 -14.37061 -14.25647 -14.07132 -13.42574 -12.93604 -12.68847 -12.52627 -12.14600 -12.10821 -11.70450 -11.64209 -11.40799 -11.23200 -11.20712 -11.09051 -10.83623 -10.66585 -10.52097 -10.40986 -10.24134 -10.14662 -9.90602 -9.43147 -9.11152 -8.41914 -8.18166 -7.99908 -6.50308 -4.13876 3.02506 3.11947 3.14744 3.61336 3.81179 4.04811 4.31021 4.77869 4.86534 4.95176 5.05903 5.22443 5.40365 5.57478 5.66816 5.74858 5.77484 5.79776 5.88324 5.94313 6.06426 6.26706 6.32142 6.38511 6.44082 6.48675 6.53109 6.63741 6.66574 6.84008 6.91478 6.93908 7.19680 7.33042 7.47453 7.76911 8.12248 8.17941 8.86737 9.00759 9.24318 9.63496 10.46787 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.009104 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.535861 B = 3074.726663 C = 4061.466487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.046 4.046 3 C 0.479 3.521 4 O -0.604 6.604 5 N -0.440 5.440 6 C -0.337 4.337 7 H 0.128 0.872 8 C 0.034 3.966 9 N -0.881 5.881 10 Si 0.926 3.074 11 H -0.276 1.276 12 H -0.281 1.281 13 H -0.267 1.267 14 C 0.226 3.774 15 C 0.266 3.734 16 N -0.498 5.498 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.113 4.113 21 C 0.120 3.880 22 H 0.031 0.969 23 N -0.848 5.848 24 H 0.049 0.951 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.274 0.726 28 H 0.078 0.922 29 H 0.143 0.857 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.325 0.675 39 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.874 -11.131 -0.703 11.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.050 4.050 3 C 0.268 3.732 4 O -0.490 6.490 5 N -0.159 5.159 6 C -0.463 4.463 7 H 0.145 0.855 8 C -0.169 4.169 9 N -0.520 5.520 10 Si 0.752 3.248 11 H -0.202 1.202 12 H -0.207 1.207 13 H -0.191 1.191 14 C 0.099 3.901 15 C -0.051 4.051 16 N -0.179 5.179 17 C -0.158 4.158 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.151 4.151 21 C 0.008 3.992 22 H 0.049 0.951 23 N -0.382 5.382 24 H 0.068 0.932 25 H 0.114 0.886 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.160 0.840 30 H 0.114 0.886 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.135 0.865 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.458 -9.818 0.148 9.927 hybrid contribution 0.517 -0.215 -0.703 0.899 sum 1.975 -10.033 -0.555 10.241 Atomic orbital electron populations 1.22293 0.92795 1.01670 1.04791 1.20350 0.97839 0.91999 0.94774 1.20226 0.83409 0.87991 0.81564 1.90434 1.42275 1.78830 1.37509 1.43594 1.38694 1.09793 1.23772 1.20232 1.18437 0.95236 1.12400 0.85538 1.25333 0.97923 0.94866 0.98776 1.69766 1.41892 1.00716 1.39638 0.85918 0.80592 0.78696 0.79608 1.20168 1.20663 1.19095 1.18890 0.90613 0.79269 1.01294 1.29251 0.93034 0.93034 0.89820 1.80850 1.10635 1.11837 1.14535 1.21812 1.00258 0.94978 0.98732 1.21591 1.01283 0.95766 0.97070 1.21521 1.00443 0.98391 0.95163 1.21606 1.01811 0.94713 0.96933 1.20953 0.95791 0.92327 0.90120 0.95147 1.58927 1.67459 1.08820 1.03015 0.93228 0.88573 0.92161 0.91469 0.90435 0.84022 0.88588 0.92572 0.91395 0.92336 0.92463 0.92457 0.90947 0.92897 0.86463 0.82207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 7.31 37.16 0.27 -2.62 16 2 C -0.05 -0.84 0.32 -155.66 -0.05 -0.89 16 3 C 0.48 10.39 6.17 -10.98 -0.07 10.33 16 4 O -0.60 -14.23 13.57 5.55 0.08 -14.15 16 5 N -0.44 -9.82 2.59 -117.93 -0.31 -10.13 16 6 C -0.34 -7.38 6.63 -14.94 -0.10 -7.48 16 7 H 0.13 2.57 3.14 -52.49 -0.17 2.41 16 8 C 0.03 0.78 5.37 -17.47 -0.09 0.68 16 9 N -0.88 -21.03 8.24 55.50 0.46 -20.58 16 10 Si 0.93 18.10 29.55 -169.99 -5.02 13.08 16 11 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 12 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 13 H -0.27 -4.94 7.11 56.52 0.40 -4.53 16 14 C 0.23 4.97 5.18 -6.82 -0.04 4.94 16 15 C 0.27 6.52 13.51 -20.76 -0.28 6.24 16 16 N -0.50 -12.96 18.54 42.15 0.78 -12.18 16 17 C -0.12 -1.92 4.46 -26.73 -0.12 -2.04 16 18 C -0.12 -1.57 5.65 -26.73 -0.15 -1.72 16 19 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 20 C -0.11 -1.55 5.23 -26.73 -0.14 -1.69 16 21 C 0.12 2.01 2.05 -67.71 -0.14 1.87 16 22 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 23 N -0.85 -14.61 8.36 -4.67 -0.04 -14.65 16 24 H 0.05 0.78 4.84 -51.93 -0.25 0.53 16 25 H 0.10 1.91 4.38 -51.93 -0.23 1.68 16 26 H 0.06 1.20 7.42 -51.93 -0.39 0.81 16 27 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 28 H 0.08 1.59 7.44 -51.93 -0.39 1.21 16 29 H 0.14 3.11 6.11 -51.94 -0.32 2.79 16 30 H 0.10 1.64 5.08 -51.93 -0.26 1.37 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.89 6.30 -51.93 -0.33 0.57 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.03 6.57 -51.93 -0.34 0.69 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.32 4.77 9.04 -39.29 -0.36 4.42 16 39 H 0.36 7.16 6.35 -39.29 -0.25 6.91 16 LS Contribution 293.70 15.07 4.43 4.43 Total: -1.00 -26.40 293.70 -5.62 -32.03 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -4.94 Total: 16.13 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -1.06 Total: 6.02 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.89 Total: -57.53 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.08 Total: -14.15 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.02 Total: 13.08 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.40 -5.62 -32.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829147523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.986 kcal (2) G-P(sol) polarization free energy of solvation -26.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds