Wall clock time and date at job start Mon Mar 30 2020 04:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.46758 * 2 1 4 4 O 1.21284 * 120.00268 * 122.39439 * 3 2 1 5 5 N 1.34782 * 119.99621 * 302.39106 * 3 2 1 6 6 C 1.37098 * 120.00311 * 4.68784 * 5 3 2 7 7 H 1.08001 * 119.99741 * 343.89666 * 6 5 3 8 8 C 1.38942 * 120.00011 * 163.89798 * 6 5 3 9 9 N 1.31419 * 120.00096 * 1.16244 * 8 6 5 10 10 Si 1.86797 * 120.00091 * 181.16763 * 8 6 5 11 11 H 1.48496 * 109.47469 * 89.99618 * 10 8 6 12 12 H 1.48501 * 109.47453 * 209.99983 * 10 8 6 13 13 H 1.48504 * 109.46810 * 329.99621 * 10 8 6 14 14 C 1.46509 * 119.99834 * 184.69002 * 5 3 2 15 15 C 1.47204 * 109.46629 * 268.15619 * 14 5 3 16 16 N 5.33739 * 80.93708 * 2.76952 * 2 1 3 17 17 C 1.52993 * 109.47210 * 240.00060 * 2 1 3 18 18 C 1.53001 * 109.46887 * 299.99280 * 17 2 1 19 19 C 1.52994 * 109.47731 * 300.00192 * 18 17 2 20 20 C 1.53005 * 109.46821 * 59.99961 * 19 18 17 21 21 C 1.53000 * 109.47206 * 300.00155 * 20 19 18 22 22 H 1.09003 * 109.47183 * 299.99962 * 21 20 19 23 23 N 1.46899 * 109.47356 * 179.97438 * 21 20 19 24 24 H 1.09004 * 109.46865 * 173.93424 * 1 2 3 25 25 H 1.09001 * 109.47203 * 53.93728 * 1 2 3 26 26 H 1.08998 * 109.47466 * 293.93023 * 1 2 3 27 27 H 0.97002 * 119.99364 * 180.02562 * 9 8 6 28 28 H 1.08999 * 109.46935 * 28.15257 * 14 5 3 29 29 H 1.08988 * 109.47001 * 148.15402 * 14 5 3 30 30 H 1.08999 * 109.47676 * 59.99233 * 17 2 1 31 31 H 1.09002 * 109.47188 * 180.02562 * 17 2 1 32 32 H 1.09003 * 109.47016 * 60.00529 * 18 17 2 33 33 H 1.09006 * 109.47338 * 180.02562 * 18 17 2 34 34 H 1.08992 * 109.47791 * 179.97438 * 19 18 17 35 35 H 1.09003 * 109.47146 * 300.00257 * 19 18 17 36 36 H 1.08998 * 109.47705 * 60.00122 * 20 19 18 37 37 H 1.09002 * 109.47041 * 180.02562 * 20 19 18 38 38 H 1.00903 * 110.99849 * 59.99916 * 23 21 20 39 39 H 1.00905 * 110.99852 * 183.95171 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.7649 1.8051 0.8869 5 7 1.6673 2.2646 -0.9857 6 6 0.7641 1.8604 -1.9346 7 1 0.5419 0.8105 -2.0560 8 6 0.1346 2.8015 -2.7400 9 7 0.4220 4.0770 -2.6077 10 14 -1.1202 2.2537 -4.0106 11 1 -2.4724 2.2397 -3.3971 12 1 -1.1070 3.1965 -5.1579 13 1 -0.7788 0.8893 -4.4872 14 6 2.2358 3.6136 -1.0431 15 6 1.3629 4.5454 -0.3105 16 7 0.6893 5.2646 0.2547 17 6 2.0400 -0.7212 -1.2492 18 6 1.5302 -2.1637 -1.2491 19 6 2.0402 -2.8850 0.0001 20 6 1.5301 -2.1637 1.2494 21 6 2.0400 -0.7211 1.2493 22 1 3.1300 -0.7211 1.2494 23 7 1.5498 -0.0284 2.4484 24 1 -0.3633 -1.0220 -0.1086 25 1 -0.3634 0.6050 -0.8307 26 1 -0.3634 0.4168 0.9393 27 1 -0.0178 4.7340 -3.1698 28 1 3.2264 3.6100 -0.5883 29 1 2.3145 3.9307 -2.0828 30 1 1.6766 -0.2075 -2.1392 31 1 3.1301 -0.7216 -1.2489 32 1 0.4401 -2.1638 -1.2491 33 1 1.8939 -2.6778 -2.1388 34 1 1.6766 -3.9124 0.0005 35 1 3.1302 -2.8849 0.0002 36 1 0.4401 -2.1637 1.2494 37 1 1.8938 -2.6772 2.1394 38 1 1.8730 -0.4858 3.2877 39 1 1.8192 0.9440 2.4398 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829147523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:54 Heat of formation + Delta-G solvation = -10.287338 kcal Electronic energy + Delta-G solvation = -21852.946106 eV Core-core repulsion = 18795.400564 eV Total energy + Delta-G solvation = -3057.545542 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.74364 -39.04960 -37.43127 -36.39748 -34.25451 -33.52555 -32.90846 -29.49752 -29.04563 -27.36671 -26.50276 -23.71305 -22.76318 -21.19503 -19.97906 -19.28067 -18.12377 -17.58892 -16.54484 -16.36113 -16.06245 -15.83307 -15.59999 -15.54343 -14.98278 -14.51193 -14.35904 -13.88749 -13.66720 -13.54471 -13.32408 -13.20839 -13.02678 -12.90906 -12.76573 -12.45007 -12.21680 -12.10697 -12.01999 -11.92331 -11.75806 -11.43565 -11.11614 -10.97881 -10.62202 -10.07785 -9.90383 -9.40856 -8.23832 -5.90589 1.45248 1.53147 1.62580 1.86280 2.05471 2.31251 2.40801 3.11951 3.13278 3.68657 3.76120 3.82496 3.99270 4.23737 4.39820 4.48929 4.50094 4.58537 4.61573 4.67423 4.76269 4.92676 5.09725 5.12818 5.17347 5.22726 5.26356 5.33663 5.37823 5.40046 5.48058 5.59081 5.69531 5.75031 5.81986 6.36300 6.44989 6.74777 7.05095 7.12473 7.51481 7.90225 8.72690 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.009104 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.535861 B = 3074.726663 C = 4061.466487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.045 4.045 3 C 0.468 3.532 4 O -0.627 6.627 5 N -0.450 5.450 6 C -0.335 4.335 7 H 0.145 0.855 8 C -0.008 4.008 9 N -0.908 5.908 10 Si 0.981 3.019 11 H -0.288 1.288 12 H -0.289 1.289 13 H -0.243 1.243 14 C 0.227 3.773 15 C 0.275 3.725 16 N -0.531 5.531 17 C -0.116 4.116 18 C -0.116 4.116 19 C -0.113 4.113 20 C -0.106 4.106 21 C 0.120 3.880 22 H 0.016 0.984 23 N -0.851 5.851 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.037 0.963 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.145 0.855 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.338 0.662 39 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 -14.070 -1.394 14.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.048 4.048 3 C 0.259 3.741 4 O -0.514 6.514 5 N -0.169 5.169 6 C -0.461 4.461 7 H 0.162 0.838 8 C -0.208 4.208 9 N -0.549 5.549 10 Si 0.806 3.194 11 H -0.214 1.214 12 H -0.215 1.215 13 H -0.166 1.166 14 C 0.100 3.900 15 C -0.042 4.042 16 N -0.213 5.213 17 C -0.154 4.154 18 C -0.153 4.153 19 C -0.151 4.151 20 C -0.144 4.144 21 C 0.008 3.992 22 H 0.034 0.966 23 N -0.385 5.385 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.162 0.838 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.150 0.850 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.255 -12.805 -0.540 12.878 hybrid contribution 0.634 0.714 -0.414 1.041 sum 1.889 -12.091 -0.954 12.274 Atomic orbital electron populations 1.22189 0.92742 1.02911 1.02791 1.20421 0.97659 0.89919 0.96785 1.21038 0.82795 0.89433 0.80805 1.90415 1.43181 1.79596 1.38225 1.43821 1.39021 1.09728 1.24282 1.20650 1.17719 0.96102 1.11657 0.83793 1.26050 0.99407 0.94859 1.00460 1.69872 1.42999 1.01506 1.40512 0.85059 0.77800 0.79308 0.77267 1.21434 1.21456 1.16590 1.18995 0.90650 0.79211 1.01127 1.29790 0.92624 0.92644 0.89130 1.80828 1.11809 1.12915 1.15766 1.21776 1.00027 0.96826 0.96802 1.21595 1.01474 0.93636 0.98606 1.21525 1.00639 0.99381 0.93593 1.21582 1.01591 0.92560 0.98707 1.21030 0.94968 0.94062 0.89167 0.96627 1.58959 1.67488 1.07914 1.04131 0.90359 0.90181 0.94336 0.92173 0.89214 0.83828 0.89690 0.92954 0.90990 0.90207 0.89785 0.92239 0.91118 0.91364 0.84969 0.84184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 7.31 71.98 0.53 -4.69 16 2 C -0.04 -1.55 0.32 -52.93 -0.02 -1.57 16 3 C 0.47 20.29 6.17 87.66 0.54 20.83 16 4 O -0.63 -29.79 13.57 -3.04 -0.04 -29.83 16 5 N -0.45 -20.10 2.59 -645.41 -1.67 -21.77 16 6 C -0.34 -14.47 6.63 84.04 0.56 -13.91 16 7 H 0.15 5.62 3.14 -2.91 -0.01 5.61 16 8 C -0.01 -0.36 5.37 84.92 0.46 0.09 16 9 N -0.91 -43.80 8.24 21.66 0.18 -43.63 16 10 Si 0.98 36.36 29.55 68.60 2.03 38.39 16 11 H -0.29 -11.18 7.11 99.48 0.71 -10.47 16 12 H -0.29 -10.99 7.11 99.48 0.71 -10.28 16 13 H -0.24 -8.01 7.11 99.48 0.71 -7.30 16 14 C 0.23 10.12 5.18 84.57 0.44 10.56 16 15 C 0.27 13.73 13.51 89.44 1.21 14.94 16 16 N -0.53 -28.25 18.54 20.01 0.37 -27.88 16 17 C -0.12 -3.46 4.46 30.59 0.14 -3.33 16 18 C -0.12 -2.58 5.65 30.59 0.17 -2.41 16 19 C -0.11 -2.30 5.92 30.59 0.18 -2.12 16 20 C -0.11 -2.58 5.23 30.60 0.16 -2.42 16 21 C 0.12 3.82 2.05 44.92 0.09 3.91 16 22 H 0.02 0.55 8.07 -2.39 -0.02 0.53 16 23 N -0.85 -28.72 8.36 -168.68 -1.41 -30.13 16 24 H 0.08 2.25 4.84 -2.39 -0.01 2.24 16 25 H 0.08 3.06 4.38 -2.39 -0.01 3.05 16 26 H 0.04 1.49 7.42 -2.39 -0.02 1.47 16 27 H 0.27 12.84 8.31 -92.71 -0.77 12.07 16 28 H 0.09 3.74 7.44 -2.39 -0.02 3.72 16 29 H 0.14 6.39 6.11 -2.39 -0.01 6.38 16 30 H 0.08 2.71 5.08 -2.39 -0.01 2.70 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.57 6.30 -2.39 -0.02 1.55 16 33 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.76 6.57 -2.39 -0.02 1.74 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.34 9.57 9.04 -89.69 -0.81 8.75 16 39 H 0.34 13.74 6.35 -89.69 -0.57 13.17 16 Total: -1.00 -56.67 293.70 3.64 -53.03 By element: Atomic # 1 Polarization: 42.19 SS G_CDS: -0.27 Total: 41.92 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: 4.45 Total: 19.89 kcal Atomic # 7 Polarization: -120.87 SS G_CDS: -2.53 Total: -123.40 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.04 Total: -29.83 kcal Atomic # 14 Polarization: 36.36 SS G_CDS: 2.03 Total: 38.39 kcal Total: -56.67 3.64 -53.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829147523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.746 kcal (2) G-P(sol) polarization free energy of solvation -56.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds