Wall clock time and date at job start Mon Mar 30 2020 04:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00173 * 2 1 4 4 H 1.48499 * 109.47245 * 270.00130 * 3 2 1 5 5 H 1.48503 * 109.47216 * 30.00031 * 3 2 1 6 6 H 1.48501 * 109.47332 * 150.00262 * 3 2 1 7 7 C 1.37881 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99255 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00217 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46903 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46903 * 179.97438 * 10 9 7 12 12 N 1.31130 * 126.55277 * 90.25528 * 11 10 9 13 13 C 1.34497 * 105.61415 * 180.12482 * 12 11 10 14 14 C 1.50698 * 126.28545 * 179.90574 * 13 12 11 15 15 C 1.53000 * 109.47025 * 269.70401 * 14 13 12 16 16 C 1.53120 * 109.52168 * 65.13025 * 15 14 13 17 17 C 1.53166 * 109.20873 * 177.56393 * 16 15 14 18 18 N 1.46845 * 109.55463 * 300.85535 * 17 16 15 19 19 C 1.46848 * 111.19518 * 61.74755 * 18 17 16 20 20 C 1.53037 * 109.52381 * 298.25146 * 19 18 17 21 21 N 1.29946 * 107.42404 * 359.63399 * 13 12 11 22 22 O 1.21300 * 110.25285 * 0.23473 * 21 13 12 23 23 H 0.97002 * 119.99824 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47080 * 59.99966 * 9 7 2 25 25 H 1.08993 * 109.46953 * 299.99555 * 9 7 2 26 26 H 1.09001 * 109.47332 * 59.99902 * 10 9 7 27 27 H 1.09002 * 109.47305 * 299.99606 * 10 9 7 28 28 H 1.09007 * 109.47265 * 149.71072 * 14 13 12 29 29 H 1.08998 * 109.47332 * 29.70948 * 14 13 12 30 30 H 1.09002 * 109.52286 * 305.00253 * 15 14 13 31 31 H 1.09004 * 109.49930 * 297.56596 * 16 15 14 32 32 H 1.08997 * 109.50353 * 57.67812 * 16 15 14 33 33 H 1.09003 * 109.44926 * 180.83262 * 17 16 15 34 34 H 1.09002 * 109.44150 * 60.87652 * 17 16 15 35 35 H 1.00906 * 111.00175 * 185.84140 * 18 17 16 36 36 H 1.09006 * 109.46097 * 178.23945 * 19 18 17 37 37 H 1.08996 * 109.46046 * 58.26729 * 19 18 17 38 38 H 1.08996 * 109.50616 * 299.24564 * 20 19 18 39 39 H 1.08993 * 109.53667 * 179.13827 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6366 -0.0010 11 6 5.5286 -2.6365 -0.0022 12 7 6.3104 -2.6408 1.0505 13 6 7.5661 -2.6360 0.5689 14 6 8.8338 -2.6362 1.3837 15 6 9.2635 -1.1937 1.6587 16 6 8.2180 -0.5081 2.5426 17 6 8.6845 0.9150 2.8635 18 7 9.9794 0.8638 3.5541 19 6 11.0097 0.2513 2.7057 20 6 10.6138 -1.1908 2.3807 21 7 7.4854 -2.6371 -0.7281 22 8 6.3236 -2.6374 -1.0765 23 1 -0.4850 0.8401 0.0004 24 1 3.8753 -0.6804 0.8889 25 1 3.8745 -0.6801 -0.8911 26 1 3.6579 -3.1506 -0.8907 27 1 3.6586 -3.1502 0.8893 28 1 9.6206 -3.1506 0.8316 29 1 8.6581 -3.1495 2.3290 30 1 9.3535 -0.6544 0.7157 31 1 7.2645 -0.4701 2.0156 32 1 8.1000 -1.0698 3.4692 33 1 7.9499 1.4018 3.5050 34 1 8.7890 1.4801 1.9373 35 1 10.2625 1.7826 3.8605 36 1 11.9640 0.2559 3.2326 37 1 11.1031 0.8196 1.7804 38 1 10.5335 -1.7633 3.3048 39 1 11.3708 -1.6407 1.7385 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905310126.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:35 Heat of formation + Delta-G solvation = 41.853175 kcal Electronic energy + Delta-G solvation = -20031.074953 eV Core-core repulsion = 16975.790393 eV Total energy + Delta-G solvation = -3055.284560 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.21897 -39.03456 -35.93269 -34.88950 -33.45243 -32.33075 -30.95030 -30.56102 -28.06912 -26.22011 -23.68229 -23.22625 -22.65818 -21.43946 -20.31472 -19.73460 -17.76239 -17.20620 -16.80224 -16.70140 -14.81100 -14.79183 -14.69150 -14.43231 -14.30203 -13.98994 -13.47878 -13.33433 -12.81497 -12.79365 -12.49486 -12.15924 -11.93969 -11.86145 -11.41462 -11.35108 -11.10417 -10.88478 -10.76264 -10.57485 -10.50954 -10.33996 -10.21164 -9.91086 -9.38247 -9.36369 -8.69251 -8.64110 -6.14698 -4.15174 1.50473 2.53646 3.25234 3.26277 3.33398 3.36561 3.85414 3.99955 4.28055 4.36677 4.56695 4.66009 4.70027 5.03755 5.13662 5.19170 5.20530 5.26579 5.39927 5.44525 5.48501 5.62995 5.68091 5.72974 5.80529 5.90699 5.97310 6.00743 6.07626 6.15089 6.29792 6.34620 6.45501 6.79797 7.00684 7.13029 7.14345 7.60391 8.37376 8.51001 8.87618 9.46032 10.97977 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.019389 B = 0.005003 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.744218 B = 5595.327491 C = 6697.665699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.525 4.525 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.019 4.019 11 C 0.207 3.793 12 N -0.490 5.490 13 C 0.168 3.832 14 C -0.020 4.020 15 C -0.083 4.083 16 C -0.112 4.112 17 C 0.057 3.943 18 N -0.690 5.690 19 C 0.058 3.942 20 C -0.110 4.110 21 N -0.400 5.400 22 O 0.067 5.933 23 H 0.265 0.735 24 H 0.026 0.974 25 H 0.018 0.982 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.028 0.972 35 H 0.341 0.659 36 H 0.074 0.926 37 H 0.028 0.972 38 H 0.075 0.925 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.616 -1.473 4.309 21.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.096 0.904 9 C -0.045 4.045 10 C -0.058 4.058 11 C -0.013 4.013 12 N -0.224 5.224 13 C -0.105 4.105 14 C -0.059 4.059 15 C -0.103 4.103 16 C -0.149 4.149 17 C -0.072 4.072 18 N -0.321 5.321 19 C -0.071 4.071 20 C -0.148 4.148 21 N -0.111 5.111 22 O 0.011 5.989 23 H 0.075 0.925 24 H 0.044 0.956 25 H 0.036 0.964 26 H 0.114 0.886 27 H 0.124 0.876 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.158 0.842 36 H 0.093 0.907 37 H 0.046 0.954 38 H 0.093 0.907 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 21.095 -1.964 4.539 21.667 hybrid contribution 0.315 1.702 -0.790 1.903 sum 21.410 -0.261 3.749 21.738 Atomic orbital electron populations 1.69889 1.06230 1.27139 1.50217 1.24938 0.94701 0.99046 0.94209 0.86842 0.80445 0.83785 0.78675 1.20121 1.21110 1.19038 1.20934 0.88364 0.94954 1.52069 0.90353 1.19609 0.97890 0.89607 0.97412 1.20525 0.77184 1.02961 1.05180 1.29653 0.99451 0.92287 0.79863 1.71958 0.99727 1.21769 1.28970 1.25729 0.95523 1.00771 0.88487 1.19976 0.89167 0.98213 0.98541 1.21184 0.95593 0.94409 0.99095 1.21674 0.98030 0.95024 1.00210 1.21968 0.91143 0.97356 0.96777 1.60292 1.03063 1.27194 1.41574 1.21898 0.94729 0.95260 0.95243 1.21616 0.95881 0.96553 1.00730 1.74553 0.98205 1.22582 1.15752 1.85274 1.11313 1.66093 1.36234 0.92474 0.95599 0.96364 0.88578 0.87618 0.89442 0.88676 0.91368 0.91012 0.90590 0.90497 0.95419 0.84151 0.90747 0.95365 0.90663 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.96 55.43 0.77 -25.92 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.53 -14.10 9.66 -34.44 -0.33 -14.44 16 8 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.15 4.02 -27.88 -0.11 -0.26 16 10 C -0.02 -0.35 5.78 -27.88 -0.16 -0.52 16 11 C 0.21 3.71 7.77 -13.06 -0.10 3.60 16 12 N -0.49 -8.69 10.98 -9.87 -0.11 -8.80 16 13 C 0.17 2.68 6.67 -156.37 -1.04 1.64 16 14 C -0.02 -0.24 5.32 -27.88 -0.15 -0.39 16 15 C -0.08 -0.95 2.24 -90.49 -0.20 -1.15 16 16 C -0.11 -1.43 5.16 -26.58 -0.14 -1.57 16 17 C 0.06 0.65 6.55 -3.77 -0.02 0.62 16 18 N -0.69 -6.78 6.85 -113.74 -0.78 -7.56 16 19 C 0.06 0.51 6.55 -3.83 -0.03 0.48 16 20 C -0.11 -0.99 5.38 -26.65 -0.14 -1.13 16 21 N -0.40 -6.93 12.16 30.90 0.38 -6.55 16 22 O 0.07 1.19 11.31 18.09 0.20 1.39 16 23 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.03 0.60 7.20 -51.93 -0.37 0.23 16 25 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 26 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 27 H 0.11 1.86 8.14 -51.93 -0.42 1.43 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.12 7.01 -51.93 -0.36 0.75 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.34 2.74 8.90 -39.29 -0.35 2.39 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 318.73 15.07 4.80 4.80 Total: -1.00 -30.07 318.73 -8.07 -38.14 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.14 Total: -0.88 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -2.53 Total: -11.13 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.26 Total: -48.82 kcal Atomic # 8 Polarization: 1.19 SS G_CDS: 0.20 Total: 1.39 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.07 -8.07 -38.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905310126.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.996 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds