Wall clock time and date at job start Mon Mar 30 2020 04:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00173 * 2 1 4 4 H 1.48499 * 109.47245 * 270.00130 * 3 2 1 5 5 H 1.48503 * 109.47216 * 30.00031 * 3 2 1 6 6 H 1.48501 * 109.47332 * 150.00262 * 3 2 1 7 7 C 1.37881 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99255 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00217 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46903 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46903 * 179.97438 * 10 9 7 12 12 N 1.31130 * 126.55277 * 90.25528 * 11 10 9 13 13 C 1.34497 * 105.61415 * 180.12482 * 12 11 10 14 14 C 1.50698 * 126.28545 * 179.90574 * 13 12 11 15 15 C 1.53000 * 109.47025 * 269.70401 * 14 13 12 16 16 C 1.53120 * 109.52168 * 65.13025 * 15 14 13 17 17 C 1.53166 * 109.20873 * 177.56393 * 16 15 14 18 18 N 1.46845 * 109.55463 * 300.85535 * 17 16 15 19 19 C 1.46848 * 111.19518 * 61.74755 * 18 17 16 20 20 C 1.53037 * 109.52381 * 298.25146 * 19 18 17 21 21 N 1.29946 * 107.42404 * 359.63399 * 13 12 11 22 22 O 1.21300 * 110.25285 * 0.23473 * 21 13 12 23 23 H 0.97002 * 119.99824 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47080 * 59.99966 * 9 7 2 25 25 H 1.08993 * 109.46953 * 299.99555 * 9 7 2 26 26 H 1.09001 * 109.47332 * 59.99902 * 10 9 7 27 27 H 1.09002 * 109.47305 * 299.99606 * 10 9 7 28 28 H 1.09007 * 109.47265 * 149.71072 * 14 13 12 29 29 H 1.08998 * 109.47332 * 29.70948 * 14 13 12 30 30 H 1.09002 * 109.52286 * 305.00253 * 15 14 13 31 31 H 1.09004 * 109.49930 * 297.56596 * 16 15 14 32 32 H 1.08997 * 109.50353 * 57.67812 * 16 15 14 33 33 H 1.09003 * 109.44926 * 180.83262 * 17 16 15 34 34 H 1.09002 * 109.44150 * 60.87652 * 17 16 15 35 35 H 1.00906 * 111.00175 * 185.84140 * 18 17 16 36 36 H 1.09006 * 109.46097 * 178.23945 * 19 18 17 37 37 H 1.08996 * 109.46046 * 58.26729 * 19 18 17 38 38 H 1.08996 * 109.50616 * 299.24564 * 20 19 18 39 39 H 1.08993 * 109.53667 * 179.13827 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6366 -0.0010 11 6 5.5286 -2.6365 -0.0022 12 7 6.3104 -2.6408 1.0505 13 6 7.5661 -2.6360 0.5689 14 6 8.8338 -2.6362 1.3837 15 6 9.2635 -1.1937 1.6587 16 6 8.2180 -0.5081 2.5426 17 6 8.6845 0.9150 2.8635 18 7 9.9794 0.8638 3.5541 19 6 11.0097 0.2513 2.7057 20 6 10.6138 -1.1908 2.3807 21 7 7.4854 -2.6371 -0.7281 22 8 6.3236 -2.6374 -1.0765 23 1 -0.4850 0.8401 0.0004 24 1 3.8753 -0.6804 0.8889 25 1 3.8745 -0.6801 -0.8911 26 1 3.6579 -3.1506 -0.8907 27 1 3.6586 -3.1502 0.8893 28 1 9.6206 -3.1506 0.8316 29 1 8.6581 -3.1495 2.3290 30 1 9.3535 -0.6544 0.7157 31 1 7.2645 -0.4701 2.0156 32 1 8.1000 -1.0698 3.4692 33 1 7.9499 1.4018 3.5050 34 1 8.7890 1.4801 1.9373 35 1 10.2625 1.7826 3.8605 36 1 11.9640 0.2559 3.2326 37 1 11.1031 0.8196 1.7804 38 1 10.5335 -1.7633 3.3048 39 1 11.3708 -1.6407 1.7385 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905310126.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:34 Heat of formation + Delta-G solvation = 20.700803 kcal Electronic energy + Delta-G solvation = -20031.992189 eV Core-core repulsion = 16975.790393 eV Total energy + Delta-G solvation = -3056.201796 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.56156 -39.88950 -37.19975 -36.43677 -34.84281 -33.92450 -32.17323 -31.76356 -29.07452 -28.01927 -24.88610 -24.26214 -23.79519 -22.95283 -21.64486 -20.64689 -19.26245 -18.91099 -18.24467 -17.60930 -16.38894 -15.94838 -15.84537 -15.59668 -15.40157 -15.19488 -14.89228 -14.69461 -14.28455 -13.86499 -13.67725 -13.52765 -13.19827 -12.98215 -12.84492 -12.72535 -12.34388 -12.18009 -12.10068 -11.93316 -11.80142 -11.72966 -11.48333 -11.44248 -11.28950 -10.78578 -10.74776 -9.45990 -8.30656 -6.34946 0.12526 1.22524 1.33678 1.36280 1.45909 1.85657 2.33422 2.67593 3.04995 3.05582 3.25496 3.69387 3.73680 3.81179 4.06768 4.23246 4.31170 4.32702 4.37830 4.39729 4.51312 4.57712 4.60926 4.69733 4.83096 4.83859 4.89342 4.92753 4.98305 5.01472 5.16123 5.20171 5.22900 5.34974 5.40439 5.56744 6.01160 6.22338 6.45970 6.72555 7.15604 7.29624 8.85152 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.019389 B = 0.005003 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.744218 B = 5595.327491 C = 6697.665699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.016 3.984 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.256 1.256 7 C -0.528 4.528 8 H 0.053 0.947 9 C -0.002 4.002 10 C -0.009 4.009 11 C 0.203 3.797 12 N -0.502 5.502 13 C 0.174 3.826 14 C -0.020 4.020 15 C -0.077 4.077 16 C -0.110 4.110 17 C 0.059 3.941 18 N -0.693 5.693 19 C 0.055 3.945 20 C -0.104 4.104 21 N -0.411 5.411 22 O 0.058 5.942 23 H 0.268 0.732 24 H 0.019 0.981 25 H 0.021 0.979 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.021 0.979 35 H 0.352 0.648 36 H 0.095 0.905 37 H 0.026 0.974 38 H 0.078 0.922 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.410 -1.249 4.786 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.182 4.182 3 Si 0.760 3.240 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.180 1.180 7 C -0.566 4.566 8 H 0.071 0.929 9 C -0.040 4.040 10 C -0.048 4.048 11 C -0.016 4.016 12 N -0.236 5.236 13 C -0.099 4.099 14 C -0.059 4.059 15 C -0.097 4.097 16 C -0.148 4.148 17 C -0.070 4.070 18 N -0.325 5.325 19 C -0.074 4.074 20 C -0.142 4.142 21 N -0.124 5.124 22 O 0.005 5.995 23 H 0.077 0.923 24 H 0.038 0.962 25 H 0.040 0.960 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.039 0.961 35 H 0.171 0.829 36 H 0.114 0.886 37 H 0.044 0.956 38 H 0.097 0.903 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 23.900 -1.745 5.006 24.481 hybrid contribution -0.544 1.569 -0.911 1.894 sum 23.355 -0.177 4.095 23.712 Atomic orbital electron populations 1.70018 1.07940 1.28169 1.52127 1.25775 0.95427 1.02781 0.94182 0.85870 0.79410 0.79535 0.79151 1.19179 1.20748 1.18037 1.21256 0.90643 0.93952 1.50706 0.92891 1.19456 0.95063 0.92468 0.97059 1.20293 0.77683 1.00429 1.06419 1.29430 0.99205 0.92817 0.80186 1.71981 1.00624 1.21841 1.29151 1.26430 0.96199 0.98932 0.88365 1.20237 0.87902 0.98965 0.98771 1.21134 0.96596 0.93541 0.98407 1.21608 0.97120 0.96159 0.99892 1.21866 0.92208 0.96313 0.96626 1.60282 1.02635 1.28122 1.41464 1.22000 0.95182 0.94878 0.95319 1.21611 0.94649 0.97024 1.00922 1.74551 0.97882 1.23539 1.16463 1.85260 1.11581 1.66399 1.36262 0.92325 0.96248 0.96029 0.86947 0.87018 0.87211 0.87506 0.92724 0.94240 0.90908 0.90759 0.96076 0.82931 0.88637 0.95580 0.90293 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.10 13.96 21.45 0.30 -56.80 16 2 C 0.02 0.93 5.47 84.66 0.46 1.39 16 3 Si 0.94 43.52 27.47 68.60 1.88 45.40 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.26 -11.41 6.54 99.48 0.65 -10.76 16 7 C -0.53 -28.60 9.66 25.60 0.25 -28.35 16 8 H 0.05 3.06 7.99 -2.91 -0.02 3.04 16 9 C 0.00 -0.08 4.02 29.85 0.12 0.04 16 10 C -0.01 -0.34 5.78 29.85 0.17 -0.16 16 11 C 0.20 7.10 7.77 88.38 0.69 7.79 16 12 N -0.50 -17.29 10.98 -303.19 -3.33 -20.62 16 13 C 0.17 5.30 6.67 138.46 0.92 6.23 16 14 C -0.02 -0.43 5.32 29.85 0.16 -0.27 16 15 C -0.08 -1.60 2.24 -10.71 -0.02 -1.63 16 16 C -0.11 -2.71 5.16 30.69 0.16 -2.55 16 17 C 0.06 1.30 6.55 86.37 0.57 1.86 16 18 N -0.69 -12.11 6.85 -513.77 -3.52 -15.63 16 19 C 0.06 0.81 6.55 86.33 0.57 1.37 16 20 C -0.10 -1.55 5.38 30.65 0.16 -1.39 16 21 N -0.41 -13.73 12.16 -60.31 -0.73 -14.46 16 22 O 0.06 2.02 11.31 74.81 0.85 2.86 16 23 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 24 H 0.02 0.89 7.20 -2.38 -0.02 0.87 16 25 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 26 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 27 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 28 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.22 7.01 -2.39 -0.02 1.20 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.35 4.87 8.90 -89.69 -0.80 4.08 16 36 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -64.37 318.73 -0.16 -64.53 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.19 Total: 10.39 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 4.20 Total: -15.67 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -7.28 Total: -107.51 kcal Atomic # 8 Polarization: 2.02 SS G_CDS: 0.85 Total: 2.86 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.88 Total: 45.40 kcal Total: -64.37 -0.16 -64.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905310126.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.228 kcal (2) G-P(sol) polarization free energy of solvation -64.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds