Wall clock time and date at job start Mon Mar 30 2020 04:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30832 * 125.89775 * 2 1 4 4 N 1.40087 * 108.20498 * 180.02562 * 3 2 1 5 5 H 0.97007 * 126.03645 * 180.02562 * 4 3 2 6 6 C 1.34951 * 107.92404 * 359.75056 * 4 3 2 7 7 C 1.50699 * 126.12738 * 180.24169 * 6 4 3 8 8 C 1.35312 * 107.74466 * 0.39179 * 6 4 3 9 9 C 1.50699 * 126.04025 * 179.86963 * 8 6 4 10 10 H 1.09003 * 109.46808 * 348.13211 * 9 8 6 11 11 C 1.52998 * 109.46965 * 108.13347 * 9 8 6 12 12 N 1.46494 * 109.47239 * 228.13263 * 9 8 6 13 13 C 1.34781 * 120.00092 * 163.53807 * 12 9 8 14 14 O 1.21284 * 119.99992 * 0.02562 * 13 12 9 15 15 C 1.50698 * 120.00143 * 180.02562 * 13 12 9 16 16 H 1.08999 * 109.47307 * 59.99817 * 15 13 12 17 17 C 1.53006 * 109.47351 * 300.00109 * 15 13 12 18 18 C 1.50697 * 109.47205 * 180.02562 * 15 13 12 19 19 H 1.08000 * 120.00015 * 359.97438 * 18 15 13 20 20 C 1.37877 * 120.00239 * 179.97438 * 18 15 13 21 21 N 1.31524 * 119.99949 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 120.00331 * 180.02562 * 20 18 15 23 23 H 1.48499 * 109.46893 * 0.02562 * 22 20 18 24 24 H 1.48490 * 109.47016 * 120.00026 * 22 20 18 25 25 H 1.48493 * 109.47016 * 240.00199 * 22 20 18 26 26 H 1.08994 * 109.47132 * 275.73211 * 1 2 3 27 27 H 1.08999 * 109.46752 * 35.73001 * 1 2 3 28 28 H 1.08994 * 109.46921 * 155.73410 * 1 2 3 29 29 H 1.08997 * 109.46762 * 270.18084 * 7 6 4 30 30 H 1.09000 * 109.46928 * 30.17780 * 7 6 4 31 31 H 1.08995 * 109.47017 * 150.18067 * 7 6 4 32 32 H 1.09002 * 109.46971 * 299.99877 * 11 9 8 33 33 H 1.08996 * 109.47502 * 59.99893 * 11 9 8 34 34 H 1.09006 * 109.47111 * 180.02562 * 11 9 8 35 35 H 0.97001 * 120.00722 * 343.53749 * 12 9 8 36 36 H 1.09001 * 109.46721 * 59.99775 * 17 15 13 37 37 H 1.08998 * 109.46985 * 300.00535 * 17 15 13 38 38 H 1.08994 * 109.47303 * 179.97438 * 17 15 13 39 39 H 0.96995 * 119.99773 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 1 4.3909 1.2080 -0.0004 6 6 3.6143 -0.7154 0.0046 7 6 4.8350 -1.5990 0.0111 8 6 2.3272 -1.1330 -0.0004 9 6 1.8599 -2.5658 0.0000 10 1 2.7044 -3.2233 -0.2065 11 6 1.2689 -2.9091 1.3688 12 7 0.8367 -2.7460 -1.0328 13 6 0.5095 -3.9857 -1.4482 14 8 1.0618 -4.9521 -0.9666 15 6 -0.5426 -4.1711 -2.5111 16 1 -0.2317 -3.6613 -3.4230 17 6 -1.8684 -3.5823 -2.0245 18 6 -0.7194 -5.6410 -2.7920 19 1 -0.1286 -6.3683 -2.2549 20 6 -1.6354 -6.0575 -3.7346 21 7 -2.3545 -5.1719 -4.3891 22 14 -1.8550 -7.8797 -4.0824 23 1 -0.9347 -8.6628 -3.2192 24 1 -3.2576 -8.2730 -3.7944 25 1 -1.5476 -8.1519 -5.5094 26 1 -0.3633 0.1026 1.0225 27 1 -0.3633 0.8342 -0.6001 28 1 -0.3633 -0.9368 -0.4223 29 1 5.1338 -1.8133 -1.0149 30 1 5.6489 -1.0903 0.5278 31 1 4.6053 -2.5322 0.5252 32 1 2.0302 -2.7750 2.1372 33 1 0.4245 -2.2515 1.5753 34 1 0.9313 -3.9455 1.3692 35 1 0.3947 -1.9731 -1.4178 36 1 -1.7408 -2.5191 -1.8210 37 1 -2.1794 -4.0919 -1.1126 38 1 -2.6293 -3.7160 -2.7934 39 1 -2.9986 -5.4649 -5.0525 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910065622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:59 Heat of formation + Delta-G solvation = -2.006069 kcal Electronic energy + Delta-G solvation = -20545.168871 eV Core-core repulsion = 17487.982431 eV Total energy + Delta-G solvation = -3057.186440 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.49419 -40.47087 -36.68454 -35.68788 -34.32453 -33.16272 -31.97834 -30.54853 -28.88546 -27.80740 -27.15133 -25.06110 -23.40508 -21.33839 -20.80180 -20.45651 -18.50671 -18.10904 -17.61881 -16.68502 -16.27463 -16.08611 -15.72996 -15.10855 -14.73506 -14.65506 -14.48091 -14.05429 -13.92768 -13.73955 -13.39666 -13.29783 -13.17071 -13.03475 -12.92495 -12.72537 -12.56779 -12.49864 -12.30761 -12.11573 -11.97298 -11.37217 -10.97505 -10.54918 -10.25354 -10.21254 -9.91372 -9.41081 -8.10565 -6.20445 0.82916 1.42118 1.44142 1.56347 1.58900 1.92566 2.04189 2.43455 2.66711 3.19001 3.62522 3.69958 4.12877 4.16623 4.24470 4.39582 4.52439 4.56532 4.69899 4.74956 4.78436 4.82367 4.85668 4.96089 5.02604 5.06041 5.12551 5.17223 5.19450 5.33029 5.55800 5.65013 5.74522 5.82189 6.00928 6.27417 6.40440 6.69219 6.80877 6.93287 7.45472 7.63855 8.95411 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.030986 B = 0.004754 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.427868 B = 5888.718228 C = 6275.240522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.085 3.915 3 N -0.321 5.321 4 N -0.466 5.466 5 H 0.452 0.548 6 C 0.114 3.886 7 C -0.097 4.097 8 C -0.265 4.265 9 C 0.226 3.774 10 H 0.071 0.929 11 C -0.150 4.150 12 N -0.721 5.721 13 C 0.524 3.476 14 O -0.582 6.582 15 C 0.022 3.978 16 H 0.036 0.964 17 C -0.119 4.119 18 C -0.523 4.523 19 H 0.050 0.950 20 C 0.018 3.982 21 N -0.912 5.912 22 Si 0.955 3.045 23 H -0.278 1.278 24 H -0.275 1.275 25 H -0.276 1.276 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.403 0.597 36 H 0.050 0.950 37 H 0.025 0.975 38 H 0.069 0.931 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.751 12.722 9.537 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 N -0.145 5.145 4 N -0.176 5.176 5 H 0.299 0.701 6 C -0.017 4.017 7 C -0.156 4.156 8 C -0.277 4.277 9 C 0.121 3.879 10 H 0.089 0.911 11 C -0.208 4.208 12 N -0.376 5.376 13 C 0.313 3.687 14 O -0.462 6.462 15 C 0.000 4.000 16 H 0.054 0.946 17 C -0.177 4.177 18 C -0.562 4.562 19 H 0.068 0.932 20 C -0.181 4.181 21 N -0.552 5.552 22 Si 0.781 3.219 23 H -0.203 1.203 24 H -0.200 1.200 25 H -0.202 1.202 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.241 0.759 36 H 0.069 0.931 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.043 13.336 9.743 19.868 hybrid contribution -0.060 -1.186 -0.578 1.321 sum 10.983 12.150 9.165 18.769 Atomic orbital electron populations 1.20475 0.85835 1.03794 1.04370 1.22439 0.97755 0.89896 0.98005 1.77224 0.87464 1.22605 1.27202 1.46151 1.07236 1.04820 1.59350 0.70133 1.21244 0.97191 0.85321 0.97928 1.20662 0.92154 0.98143 1.04605 1.19713 0.92622 0.94913 1.20457 1.18900 0.90318 0.90893 0.87758 0.91119 1.22073 1.01755 1.00855 0.96135 1.46420 1.41734 1.07855 1.41570 1.21443 0.82648 0.82172 0.82456 1.90493 1.55305 1.41333 1.59027 1.18821 0.91684 0.97342 0.92109 0.94634 1.21549 0.98848 0.97199 1.00088 1.21322 1.21276 0.92263 1.21323 0.93185 1.25601 0.95286 1.01693 0.95499 1.69969 1.24987 1.34426 1.25821 0.85549 0.77881 0.80652 0.77836 1.20336 1.20039 1.20162 0.88957 0.89591 0.90507 0.89252 0.87981 0.89382 0.90479 0.91778 0.94205 0.75865 0.93119 0.95584 0.91214 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.87 9.58 71.24 0.68 -1.18 16 2 C 0.09 2.17 7.01 43.11 0.30 2.47 16 3 N -0.32 -8.11 12.70 -47.38 -0.60 -8.71 16 4 N -0.47 -8.95 7.36 -48.00 -0.35 -9.30 16 5 H 0.45 5.36 8.96 -213.32 -1.91 3.45 16 6 C 0.11 2.33 7.21 41.40 0.30 2.63 16 7 C -0.10 -1.34 10.00 71.24 0.71 -0.62 16 8 C -0.27 -6.78 4.97 -20.14 -0.10 -6.88 16 9 C 0.23 6.79 2.65 44.25 0.12 6.90 16 10 H 0.07 2.27 6.75 -2.39 -0.02 2.26 16 11 C -0.15 -4.24 9.32 71.98 0.67 -3.57 16 12 N -0.72 -25.29 4.49 -446.10 -2.00 -27.29 16 13 C 0.52 24.05 6.97 87.66 0.61 24.66 16 14 O -0.58 -30.55 14.62 -3.04 -0.04 -30.59 16 15 C 0.02 1.10 2.64 -12.29 -0.03 1.06 16 16 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 17 C -0.12 -5.42 8.86 71.98 0.64 -4.78 16 18 C -0.52 -30.42 8.37 25.60 0.21 -30.20 16 19 H 0.05 3.11 6.75 -2.91 -0.02 3.09 16 20 C 0.02 1.01 5.30 84.65 0.45 1.46 16 21 N -0.91 -51.53 11.32 21.45 0.24 -51.29 16 22 Si 0.95 45.12 29.54 68.60 2.03 47.14 16 23 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 28 H 0.08 1.79 5.15 -2.39 -0.01 1.78 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 1.30 7.36 -2.39 -0.02 1.28 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.06 1.67 7.61 -2.39 -0.02 1.66 16 34 H 0.04 1.35 7.46 -2.38 -0.02 1.33 16 35 H 0.40 12.74 5.25 -92.71 -0.49 12.25 16 36 H 0.05 1.85 7.56 -2.39 -0.02 1.84 16 37 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 3.53 6.07 -2.39 -0.01 3.51 16 39 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -71.05 318.46 2.51 -68.53 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -1.32 Total: 19.55 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 4.56 Total: -8.04 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -2.71 Total: -96.59 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.04 Total: -30.59 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -71.05 2.51 -68.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910065622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.529 kcal (2) G-P(sol) polarization free energy of solvation -71.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds