Wall clock time and date at job start Mon Mar 30 2020 04:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.50703 * 109.46912 * 179.97438 * 3 2 1 5 5 C 1.39009 * 126.77169 * 269.68354 * 4 3 2 6 6 C 1.41489 * 126.02242 * 0.02562 * 5 4 3 7 7 H 1.08001 * 119.99902 * 359.97438 * 6 5 4 8 8 C 1.39742 * 120.00001 * 180.02562 * 6 5 4 9 9 N 1.30979 * 120.00049 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99796 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47500 * 89.99571 * 10 8 6 12 12 H 1.48500 * 109.47263 * 209.99696 * 10 8 6 13 13 H 1.48500 * 109.47556 * 329.99829 * 10 8 6 14 14 N 1.34849 * 107.95836 * 179.83451 * 5 4 3 15 15 N 1.28675 * 109.63360 * 0.43866 * 14 5 4 16 16 N 1.35023 * 126.76788 * 89.99779 * 4 3 2 17 17 C 1.46495 * 126.49469 * 359.97438 * 16 4 3 18 18 C 1.52996 * 109.47120 * 90.00021 * 17 16 4 19 19 C 1.53005 * 115.55272 * 34.41684 * 18 17 16 20 20 O 1.42896 * 109.46804 * 325.58365 * 19 18 17 21 21 C 1.52995 * 117.49917 * 248.74241 * 18 17 16 22 22 C 1.53005 * 117.49840 * 180.08432 * 18 17 16 23 23 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 24 24 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 27 27 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 29 29 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 30 30 H 0.97008 * 120.00068 * 180.02562 * 9 8 6 31 31 H 1.09003 * 109.46651 * 209.99780 * 17 16 4 32 32 H 1.08990 * 109.47178 * 329.99671 * 17 16 4 33 33 H 1.09002 * 109.46992 * 85.58119 * 19 18 17 34 34 H 1.08997 * 109.47187 * 205.58572 * 19 18 17 35 35 H 0.96697 * 114.00143 * 179.97438 * 20 19 18 36 36 H 1.08996 * 117.50090 * 0.02562 * 21 18 17 37 37 H 1.08999 * 117.49793 * 145.02062 * 21 18 17 38 38 H 1.09004 * 117.49655 * 214.98072 * 22 18 17 39 39 H 1.08994 * 117.49599 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3787 1.4488 1.1145 6 6 3.9596 1.4559 2.4658 7 1 2.9063 1.4573 2.7045 8 6 4.9085 1.4623 3.4916 9 7 6.1859 1.4612 3.2021 10 14 4.3551 1.4725 5.2757 11 1 4.2089 0.0751 5.7567 12 1 5.3663 2.1778 6.1036 13 1 3.0501 2.1727 5.3853 14 7 5.6553 1.4426 0.6802 15 7 5.6743 1.4423 -0.6064 16 7 4.3557 1.4422 -1.0807 17 6 3.9344 1.4415 -2.4837 18 6 3.7872 2.8837 -2.9728 19 6 4.7796 3.8861 -2.3801 20 8 5.0667 3.5285 -1.0267 21 6 2.3746 3.3851 -3.2791 22 6 3.3495 3.0965 -4.4234 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3635 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 6.8446 1.4652 3.9143 31 1 4.6825 0.9276 -3.0874 32 1 2.9778 0.9273 -2.5755 33 1 5.7009 3.8730 -2.9625 34 1 4.3464 4.8859 -2.4077 35 1 5.6910 4.1218 -0.5871 36 1 1.5500 2.6877 -3.1318 37 1 2.1523 4.4291 -3.0587 38 1 3.7683 3.9509 -4.9552 39 1 3.1669 2.2091 -5.0293 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544711.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:49 Heat of formation + Delta-G solvation = 82.554839 kcal Electronic energy + Delta-G solvation = -21287.519146 eV Core-core repulsion = 18233.999543 eV Total energy + Delta-G solvation = -3053.519604 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.85996 -38.14256 -35.25941 -34.43407 -33.30480 -31.89119 -29.51151 -27.27220 -26.29349 -25.61783 -24.14310 -22.49390 -21.16360 -20.28513 -19.39185 -18.42987 -16.85597 -16.81569 -15.52968 -14.86030 -14.77030 -14.51631 -14.14086 -13.88902 -13.32960 -13.20608 -12.86018 -12.50857 -12.37299 -12.31466 -11.62929 -11.52387 -11.15758 -11.07459 -10.90648 -10.79274 -10.62022 -10.48054 -10.36699 -10.12218 -10.06393 -9.84896 -9.39873 -9.25257 -8.96844 -8.50643 -7.98453 -6.96646 -6.14824 -3.88191 3.12770 3.30702 3.32363 3.35215 3.61575 4.03404 4.29984 4.45835 4.62869 4.81231 4.88429 5.18009 5.48811 5.50932 5.51695 5.55382 5.57152 5.67910 5.69094 5.82401 5.84040 5.93583 5.96228 6.05906 6.08786 6.15517 6.26097 6.33508 6.43456 6.59935 6.77711 6.95624 7.26208 7.48939 7.72706 7.85002 8.27753 8.53003 8.67754 9.13845 9.34629 10.59470 10.83045 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.020028 B = 0.007333 C = 0.005925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.721610 B = 3817.564240 C = 4724.842180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.012 4.012 4 C -0.098 4.098 5 C 0.155 3.845 6 C -0.452 4.452 7 H 0.074 0.926 8 C 0.074 3.926 9 N -0.784 5.784 10 Si 0.897 3.103 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.268 1.268 14 N -0.237 5.237 15 N -0.102 5.102 16 N -0.342 5.342 17 C 0.182 3.818 18 C -0.135 4.135 19 C 0.118 3.882 20 O -0.522 6.522 21 C -0.169 4.169 22 C -0.168 4.168 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.266 0.734 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.031 0.969 35 H 0.362 0.638 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.876 2.739 -11.166 13.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.051 4.051 4 C -0.228 4.228 5 C 0.024 3.976 6 C -0.489 4.489 7 H 0.092 0.908 8 C -0.143 4.143 9 N -0.411 5.411 10 Si 0.724 3.276 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.192 1.192 14 N -0.109 5.109 15 N -0.078 5.078 16 N -0.136 5.136 17 C 0.057 3.943 18 C -0.137 4.137 19 C 0.038 3.962 20 O -0.325 6.325 21 C -0.205 4.205 22 C -0.206 4.206 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.209 0.791 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.536 2.252 -11.602 13.506 hybrid contribution -1.032 0.681 1.020 1.603 sum -7.568 2.933 -10.582 13.337 Atomic orbital electron populations 1.21782 0.96851 1.00740 1.01227 1.21547 0.94134 0.98056 1.01984 1.19560 0.89353 0.95341 1.00897 1.21116 0.92469 1.21693 0.87557 1.18748 0.86183 0.99820 0.92822 1.18448 0.93375 1.49049 0.88009 0.90818 1.25683 0.94675 0.93950 0.99958 1.70030 1.00534 1.37594 1.32989 0.86511 0.79011 0.78580 0.83546 1.20104 1.20815 1.19203 1.75019 1.20026 1.16110 0.99752 1.81246 0.96912 1.22817 1.06868 1.48886 1.06679 1.54578 1.03483 1.20645 0.99880 0.92757 0.81063 1.21983 0.96982 0.97203 0.97503 1.21328 0.95396 0.93811 0.85622 1.87231 1.67397 1.54410 1.23421 1.23171 0.92944 1.02188 1.02245 1.23013 1.03717 1.03388 0.90481 0.92772 0.93539 0.93457 0.93402 0.91233 0.93662 0.91043 0.92319 0.90059 0.90586 0.94252 0.95044 0.79110 0.88611 0.88876 0.88724 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.12 -2.02 5.92 -26.73 -0.16 -2.18 16 3 C -0.01 -0.22 5.08 -27.88 -0.14 -0.37 16 4 C -0.10 -2.28 5.69 -80.90 -0.46 -2.74 16 5 C 0.15 4.30 6.55 -85.02 -0.56 3.74 16 6 C -0.45 -12.66 9.11 -37.78 -0.34 -13.01 16 7 H 0.07 1.95 7.29 -52.49 -0.38 1.57 16 8 C 0.07 2.04 5.49 -17.35 -0.10 1.95 16 9 N -0.78 -22.77 11.92 55.54 0.66 -22.11 16 10 Si 0.90 20.34 29.56 -169.99 -5.02 15.32 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 14 N -0.24 -6.84 10.31 32.05 0.33 -6.51 16 15 N -0.10 -2.62 11.27 60.35 0.68 -1.94 16 16 N -0.34 -7.49 2.14 -56.18 -0.12 -7.61 16 17 C 0.18 3.03 6.29 -4.05 -0.03 3.00 16 18 C -0.14 -1.94 2.52 -154.51 -0.39 -2.33 16 19 C 0.12 1.84 7.18 37.16 0.27 2.11 16 20 O -0.52 -10.61 7.38 -35.23 -0.26 -10.87 16 21 C -0.17 -2.03 9.69 -26.70 -0.26 -2.29 16 22 C -0.17 -1.79 9.98 -26.69 -0.27 -2.05 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.04 0.77 7.57 -51.93 -0.39 0.38 16 29 H 0.07 1.43 7.55 -51.93 -0.39 1.03 16 30 H 0.27 7.17 8.30 -40.82 -0.34 6.83 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.08 1.14 7.54 -51.93 -0.39 0.75 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.03 0.45 7.90 -51.93 -0.41 0.04 16 35 H 0.36 6.89 9.12 45.56 0.42 7.31 16 36 H 0.10 1.10 7.90 -51.93 -0.41 0.69 16 37 H 0.09 1.09 8.05 -51.93 -0.42 0.67 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 321.80 15.07 4.85 4.85 Total: -1.00 -32.48 321.80 -6.27 -38.75 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.32 Total: 5.90 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -2.06 Total: -15.78 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 1.55 Total: -38.17 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.26 Total: -10.87 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.48 -6.27 -38.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544711.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.304 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds