Wall clock time and date at job start Mon Mar 30 2020 05:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46896 * 2 1 4 4 O 1.42893 * 109.47123 * 240.00267 * 2 1 3 5 5 C 1.52994 * 109.47090 * 119.99945 * 2 1 3 6 6 N 1.46495 * 109.47073 * 60.00292 * 5 2 1 7 7 N 1.40128 * 126.49337 * 270.14415 * 6 5 2 8 8 N 1.28672 * 108.93676 * 180.25462 * 7 6 5 9 9 C 1.34839 * 109.63049 * 359.77473 * 8 7 6 10 10 C 1.41498 * 126.01515 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00233 * 209.64211 * 10 9 8 12 12 C 1.39734 * 119.99912 * 29.64623 * 10 9 8 13 13 N 1.30987 * 120.00119 * 200.10418 * 12 10 9 14 14 Si 1.86798 * 120.00297 * 20.10277 * 12 10 9 15 15 H 1.48494 * 109.47349 * 84.69136 * 14 12 10 16 16 H 1.48501 * 109.47463 * 204.69163 * 14 12 10 17 17 H 1.48504 * 109.47183 * 324.68803 * 14 12 10 18 18 C 1.35023 * 126.49734 * 90.00222 * 6 5 2 19 19 C 1.50700 * 126.76569 * 0.02562 * 18 6 5 20 20 C 1.53787 * 113.61240 * 125.31395 * 19 18 6 21 21 C 1.53781 * 87.07979 * 139.97856 * 20 19 18 22 22 C 1.53775 * 87.17504 * 334.52434 * 21 20 19 23 23 H 1.09002 * 109.46859 * 299.99868 * 1 2 3 24 24 H 1.08996 * 109.47509 * 59.99844 * 1 2 3 25 25 H 1.09005 * 109.47174 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47092 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47169 * 300.00364 * 3 2 1 28 28 H 1.09006 * 109.46798 * 60.00266 * 3 2 1 29 29 H 0.96696 * 114.00600 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47422 * 299.99842 * 5 2 1 31 31 H 1.09001 * 109.46935 * 180.02562 * 5 2 1 32 32 H 0.96994 * 120.00489 * 180.02562 * 13 12 10 33 33 H 1.09003 * 112.91280 * 354.06550 * 19 18 6 34 34 H 1.08998 * 113.61188 * 25.42860 * 20 19 18 35 35 H 1.09004 * 113.61161 * 254.53136 * 20 19 18 36 36 H 1.09003 * 113.61146 * 89.12080 * 21 20 19 37 37 H 1.08997 * 113.60904 * 219.93224 * 21 20 19 38 38 H 1.09003 * 113.61467 * 140.02310 * 22 21 20 39 39 H 1.08996 * 113.61606 * 270.92658 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6735 -1.1667 5 6 2.0400 -0.7212 1.2492 6 7 1.5517 -2.1024 1.2492 7 7 0.3528 -2.5625 1.8099 8 7 0.2638 -3.8322 1.6214 9 6 1.3488 -4.2675 0.9495 10 6 1.6055 -5.6033 0.5598 11 1 2.6231 -5.9548 0.4740 12 6 0.5424 -6.4678 0.2860 13 7 0.7286 -7.7641 0.3133 14 14 -1.1443 -5.7750 -0.1191 15 1 -1.2121 -5.4518 -1.5669 16 1 -2.1854 -6.7806 0.2128 17 1 -1.3766 -4.5417 0.6748 18 6 2.1703 -3.1729 0.7065 19 6 3.4936 -3.1804 -0.0145 20 6 4.5076 -4.1784 0.5692 21 6 4.9073 -4.4996 -0.8806 22 6 3.4967 -4.0444 -1.2900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9564 0.8901 29 1 2.9702 -0.7121 -1.2328 30 1 1.6767 -0.2074 2.1392 31 1 3.1300 -0.7208 1.2494 32 1 -0.0092 -8.3642 0.1229 33 1 3.9014 -2.1805 -0.1635 34 1 4.0448 -5.0164 1.0904 35 1 5.3021 -3.7061 1.1469 36 1 5.7016 -3.8604 -1.2662 37 1 5.0929 -5.5589 -1.0578 38 1 3.4757 -3.4639 -2.2123 39 1 2.7581 -4.8458 -1.2762 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:49 Heat of formation + Delta-G solvation = 32.577864 kcal Electronic energy + Delta-G solvation = -21545.751305 eV Core-core repulsion = 18490.064537 eV Total energy + Delta-G solvation = -3055.686768 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.29704 -39.28881 -39.14524 -35.42879 -34.54501 -32.97878 -31.65808 -28.53329 -28.33980 -26.94893 -26.25306 -25.65919 -22.62254 -21.82414 -21.09857 -19.87108 -19.34456 -17.84290 -17.19536 -16.72216 -16.39121 -15.93453 -15.80627 -15.59910 -15.04799 -14.75930 -13.99419 -13.93752 -13.46624 -13.33396 -13.20153 -13.13084 -13.00334 -12.93663 -12.80250 -12.65319 -12.60406 -12.35861 -12.00656 -11.86660 -11.32970 -11.29354 -11.18355 -11.09870 -10.95768 -10.56840 -9.99542 -9.27905 -8.60580 -6.19724 0.88383 1.25978 1.37364 1.63207 1.87219 2.07048 2.43901 3.26328 3.27224 3.62641 3.67994 3.91695 3.97174 4.04818 4.05363 4.24889 4.25872 4.35372 4.47418 4.65568 4.71139 4.80634 4.88664 4.96008 4.97809 5.00445 5.06290 5.14006 5.22260 5.26060 5.31694 5.32578 5.39814 5.60384 5.64836 5.96117 6.35466 6.44607 6.78411 6.87371 7.07566 8.01219 8.47422 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.018261 B = 0.009068 C = 0.006999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.979623 B = 3087.106843 C = 3999.839123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.117 3.883 3 C -0.163 4.163 4 O -0.568 6.568 5 C 0.091 3.909 6 N -0.343 5.343 7 N -0.154 5.154 8 N -0.324 5.324 9 C 0.088 3.912 10 C -0.455 4.455 11 H 0.086 0.914 12 C 0.067 3.933 13 N -0.872 5.872 14 Si 0.903 3.097 15 H -0.286 1.286 16 H -0.285 1.285 17 H -0.214 1.214 18 C -0.013 4.013 19 C -0.011 4.011 20 C -0.134 4.134 21 C -0.125 4.125 22 C -0.137 4.137 23 H 0.083 0.917 24 H 0.065 0.935 25 H 0.023 0.977 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.385 0.615 30 H 0.111 0.889 31 H 0.122 0.878 32 H 0.279 0.721 33 H 0.119 0.881 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.252 17.944 -2.719 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.075 3.925 3 C -0.221 4.221 4 O -0.376 6.376 5 C -0.031 4.031 6 N -0.134 5.134 7 N -0.128 5.128 8 N -0.194 5.194 9 C -0.046 4.046 10 C -0.492 4.492 11 H 0.103 0.897 12 C -0.145 4.145 13 N -0.504 5.504 14 Si 0.728 3.272 15 H -0.213 1.213 16 H -0.211 1.211 17 H -0.137 1.137 18 C -0.149 4.149 19 C -0.031 4.031 20 C -0.172 4.172 21 C -0.162 4.162 22 C -0.175 4.175 23 H 0.102 0.898 24 H 0.084 0.916 25 H 0.043 0.957 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.235 0.765 30 H 0.129 0.871 31 H 0.140 0.860 32 H 0.089 0.911 33 H 0.137 0.863 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.127 0.873 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.208 18.133 -1.998 19.615 hybrid contribution 0.144 -0.767 -0.471 0.911 sum 7.352 17.367 -2.468 19.019 Atomic orbital electron populations 1.21730 0.93987 1.01138 1.02788 1.21629 0.94696 0.92481 0.83684 1.22345 1.02906 0.92776 1.04041 1.86696 1.27696 1.79890 1.43326 1.22893 1.01391 0.77386 1.01430 1.49756 1.15477 1.08010 1.40196 1.81264 1.02239 1.05928 1.23409 1.74863 1.23762 1.03939 1.16796 1.19270 0.90676 0.95056 0.99558 1.18280 0.94847 0.91607 1.44463 0.89667 1.26063 1.02015 0.94228 0.92168 1.69811 1.35158 1.03914 1.41533 0.86308 0.80439 0.82010 0.78451 1.21274 1.21128 1.13708 1.22253 1.00616 0.86261 1.05789 1.20901 0.87474 0.99500 0.95231 1.22955 0.97772 0.98956 0.97494 1.22741 0.96717 1.01355 0.95376 1.23016 0.98114 1.00013 0.96391 0.89799 0.91642 0.95746 0.89642 0.91145 0.89905 0.76502 0.87069 0.85957 0.91143 0.86288 0.92422 0.89799 0.87257 0.92665 0.90680 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 8.60 71.98 0.62 -3.26 16 2 C 0.12 2.58 1.17 -10.79 -0.01 2.57 16 3 C -0.16 -2.07 8.82 71.99 0.63 -1.44 16 4 O -0.57 -14.37 12.12 -148.98 -1.81 -16.17 16 5 C 0.09 2.19 5.31 86.38 0.46 2.64 16 6 N -0.34 -13.09 3.01 -331.66 -1.00 -14.09 16 7 N -0.15 -7.36 12.70 37.02 0.47 -6.89 16 8 N -0.32 -17.73 8.74 -52.52 -0.46 -18.19 16 9 C 0.09 4.64 5.66 39.67 0.22 4.86 16 10 C -0.46 -25.70 7.13 23.44 0.17 -25.53 16 11 H 0.09 4.89 5.47 -2.91 -0.02 4.88 16 12 C 0.07 3.88 5.50 85.18 0.47 4.35 16 13 N -0.87 -51.75 13.94 21.79 0.30 -51.45 16 14 Si 0.90 47.66 27.53 68.60 1.89 49.55 16 15 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 16 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 17 H -0.21 -11.79 5.10 99.48 0.51 -11.29 16 18 C -0.01 -0.56 6.00 42.25 0.25 -0.31 16 19 C -0.01 -0.33 3.56 -10.92 -0.04 -0.37 16 20 C -0.13 -4.16 7.25 31.12 0.23 -3.93 16 21 C -0.12 -3.40 8.07 31.12 0.25 -3.15 16 22 C -0.14 -4.58 7.29 31.21 0.23 -4.35 16 23 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.02 0.91 6.80 -2.38 -0.02 0.90 16 26 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.39 6.42 7.70 -74.06 -0.57 5.85 16 30 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.12 2.09 7.35 -2.39 -0.02 2.07 16 32 H 0.28 15.46 8.30 -92.71 -0.77 14.69 16 33 H 0.12 2.58 5.91 -2.39 -0.01 2.57 16 34 H 0.06 2.33 5.84 -2.39 -0.01 2.32 16 35 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.07 3.06 5.52 -2.39 -0.01 3.05 16 Total: -1.00 -75.07 306.00 3.18 -71.90 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.30 Total: 13.26 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 3.48 Total: -27.92 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -0.68 Total: -90.61 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -1.81 Total: -16.17 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 1.89 Total: 49.55 kcal Total: -75.07 3.18 -71.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.477 kcal (2) G-P(sol) polarization free energy of solvation -75.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds