Wall clock time and date at job start Mon Mar 30 2020 04:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47356 * 2 1 4 4 C 1.50696 * 109.46981 * 120.00472 * 2 1 3 5 5 C 1.39010 * 126.77382 * 300.01933 * 4 2 1 6 6 C 1.41493 * 126.01892 * 359.94656 * 5 4 2 7 7 H 1.08000 * 120.00508 * 359.97438 * 6 5 4 8 8 C 1.39745 * 119.99743 * 179.97438 * 6 5 4 9 9 N 1.30983 * 120.00276 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99819 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47187 * 179.97438 * 10 8 6 12 12 H 1.48502 * 109.47194 * 300.00406 * 10 8 6 13 13 H 1.48506 * 109.46902 * 60.00174 * 10 8 6 14 14 N 1.34844 * 107.96014 * 180.21203 * 5 4 2 15 15 N 1.28665 * 109.63414 * 359.58391 * 14 5 4 16 16 N 1.35020 * 126.76957 * 119.98284 * 4 2 1 17 17 C 1.46501 * 126.49462 * 0.03268 * 16 4 2 18 18 C 1.52993 * 109.47051 * 90.00040 * 17 16 4 19 19 H 1.08999 * 109.87485 * 53.99782 * 18 17 16 20 20 C 1.54104 * 109.87649 * 174.99890 * 18 17 16 21 21 C 1.54813 * 104.18662 * 121.45278 * 20 18 17 22 22 C 1.54996 * 102.09120 * 20.88392 * 21 20 18 23 23 O 1.43740 * 109.87836 * 292.83060 * 18 17 16 24 24 H 1.09006 * 109.47047 * 299.99888 * 1 2 3 25 25 H 1.09007 * 109.47496 * 59.99439 * 1 2 3 26 26 H 1.08994 * 109.47749 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46803 * 240.00550 * 2 1 3 28 28 H 1.09000 * 109.47533 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47463 * 300.01047 * 3 2 1 30 30 H 1.09006 * 109.46952 * 60.00053 * 3 2 1 31 31 H 0.97001 * 119.99794 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.46860 * 210.00229 * 17 16 4 33 33 H 1.09001 * 109.47068 * 329.99745 * 17 16 4 34 34 H 1.08998 * 110.49010 * 240.12665 * 20 18 17 35 35 H 1.08997 * 110.48737 * 2.64803 * 20 18 17 36 36 H 1.08994 * 110.90668 * 139.07863 * 21 20 18 37 37 H 1.08998 * 110.90583 * 262.64677 * 21 20 18 38 38 H 1.08997 * 110.62237 * 81.47773 * 22 21 20 39 39 H 1.09008 * 110.61525 * 204.31823 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 1.2304 5 6 1.7844 -0.3608 2.5528 6 6 1.0082 0.7379 2.9914 7 1 0.5455 1.3947 2.2697 8 6 0.8405 0.9733 4.3586 9 7 1.4013 0.1765 5.2341 10 14 -0.1837 2.4242 4.9378 11 1 -0.2065 2.4528 6.4223 12 1 0.4112 3.6854 4.4269 13 1 -1.5705 2.2876 4.4244 14 7 2.4188 -1.2496 3.3438 15 7 3.0270 -2.1191 2.6160 16 7 2.8112 -1.8128 1.2658 17 6 3.3322 -2.5490 0.1113 18 6 4.6915 -1.9727 -0.2899 19 1 5.3597 -1.9656 0.5712 20 6 5.3055 -2.8185 -1.4224 21 6 5.5109 -1.8109 -2.5797 22 6 5.5148 -0.4535 -1.8316 23 8 4.5263 -0.6373 -0.7953 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.2851 0.3402 6.1831 32 1 3.4463 -3.6010 0.3726 33 1 2.6372 -2.4552 -0.7232 34 1 6.2608 -3.2396 -1.1092 35 1 4.6197 -3.6112 -1.7213 36 1 6.4642 -1.9821 -3.0798 37 1 4.6862 -1.8616 -3.2906 38 1 6.4949 -0.2575 -1.3968 39 1 5.2251 0.3554 -2.5025 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545089.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:59 Heat of formation + Delta-G solvation = 8.380389 kcal Electronic energy + Delta-G solvation = -21169.287165 eV Core-core repulsion = 18112.551116 eV Total energy + Delta-G solvation = -3056.736049 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.92137 -40.28559 -36.35486 -35.65704 -34.36744 -32.99664 -30.81519 -30.42532 -27.76903 -27.36169 -26.32853 -23.36719 -23.25527 -22.12104 -21.84385 -20.16882 -19.07991 -17.57424 -17.03148 -16.69463 -16.58086 -16.19681 -15.47451 -15.31350 -15.01475 -14.51370 -14.40087 -13.75867 -13.60821 -13.54657 -13.16551 -12.94143 -12.84625 -12.71822 -12.58540 -12.43498 -12.32768 -12.04016 -11.89516 -11.85228 -11.61663 -11.45265 -11.38946 -11.09760 -10.74165 -10.57575 -10.11691 -9.23944 -8.22085 -6.07479 1.09149 1.44843 1.48100 1.56817 2.03262 2.37740 2.41367 2.94784 3.60874 3.63228 3.69714 3.90326 3.95820 4.08211 4.15882 4.23996 4.39317 4.42994 4.55165 4.61348 4.79923 4.84948 4.87786 4.93291 4.95951 4.99636 5.08263 5.10327 5.22051 5.22527 5.28269 5.33322 5.58360 5.59969 5.65650 5.87790 5.99262 6.49210 6.53981 7.00288 7.19079 8.38055 8.77911 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.027815 B = 0.006100 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.392141 B = 4589.061115 C = 5009.889055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.017 3.983 3 C -0.130 4.130 4 C -0.049 4.049 5 C 0.106 3.894 6 C -0.469 4.469 7 H 0.099 0.901 8 C 0.017 3.983 9 N -0.834 5.834 10 Si 0.978 3.022 11 H -0.282 1.282 12 H -0.259 1.259 13 H -0.257 1.257 14 N -0.286 5.286 15 N -0.188 5.188 16 N -0.360 5.360 17 C 0.125 3.875 18 C 0.065 3.935 19 H 0.040 0.960 20 C -0.139 4.139 21 C -0.141 4.141 22 C 0.033 3.967 23 O -0.386 6.386 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.268 0.732 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.493 -1.555 -18.837 19.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.004 4.004 3 C -0.188 4.188 4 C -0.186 4.186 5 C -0.028 4.028 6 C -0.506 4.506 7 H 0.116 0.884 8 C -0.196 4.196 9 N -0.463 5.463 10 Si 0.800 3.200 11 H -0.208 1.208 12 H -0.184 1.184 13 H -0.181 1.181 14 N -0.154 5.154 15 N -0.163 5.163 16 N -0.152 5.152 17 C 0.003 3.997 18 C 0.005 3.995 19 H 0.058 0.942 20 C -0.177 4.177 21 C -0.179 4.179 22 C -0.043 4.043 23 O -0.306 6.306 24 H 0.070 0.930 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.119 -2.525 -17.511 18.417 hybrid contribution -0.377 0.827 0.349 0.974 sum 4.741 -1.698 -17.162 17.885 Atomic orbital electron populations 1.21842 0.94189 1.01208 1.02607 1.19222 0.95262 0.95090 0.90831 1.21688 1.00094 0.95122 1.01862 1.22233 1.04439 0.94408 0.97501 1.19508 0.99315 0.96714 0.87232 1.18932 1.29618 1.09664 0.92394 0.88369 1.26748 0.96311 0.99531 0.96981 1.70204 1.37697 1.36260 1.02156 0.85333 0.79258 0.78430 0.77029 1.20768 1.18365 1.18110 1.74986 1.10633 1.03928 1.25864 1.81339 1.26762 1.23932 0.84223 1.49888 1.36761 1.21395 1.07195 1.22187 0.95607 0.96354 0.85519 1.23095 0.94981 0.84159 0.97218 0.94166 1.22932 1.02446 0.98811 0.93520 1.23100 1.04441 0.92882 0.97442 1.23785 0.91981 0.99482 0.89073 1.89031 1.56416 1.30471 1.54636 0.92950 0.89883 0.94095 0.90179 0.94279 0.90384 0.93414 0.92206 0.86946 0.87132 0.89297 0.88189 0.88063 0.89332 0.92758 0.87726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.04 71.98 0.65 -4.11 16 2 C 0.02 0.62 2.77 -11.54 -0.03 0.58 16 3 C -0.13 -4.62 9.04 71.98 0.65 -3.97 16 4 C -0.05 -2.36 5.77 42.25 0.24 -2.11 16 5 C 0.11 6.16 6.60 39.67 0.26 6.42 16 6 C -0.47 -26.52 7.69 23.44 0.18 -26.34 16 7 H 0.10 5.05 4.66 -2.91 -0.01 5.03 16 8 C 0.02 0.94 5.49 85.18 0.47 1.41 16 9 N -0.83 -51.22 11.92 21.80 0.26 -50.96 16 10 Si 0.98 42.28 29.56 68.60 2.03 44.31 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 13 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 14 N -0.29 -18.07 10.55 -52.52 -0.55 -18.62 16 15 N -0.19 -10.60 13.74 37.02 0.51 -10.09 16 16 N -0.36 -16.47 3.61 -331.65 -1.20 -17.67 16 17 C 0.13 3.94 5.62 86.38 0.49 4.42 16 18 C 0.06 1.83 3.67 30.97 0.11 1.94 16 19 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 20 C -0.14 -2.34 6.64 31.59 0.21 -2.13 16 21 C -0.14 -1.96 7.15 31.90 0.23 -1.73 16 22 C 0.03 0.66 7.72 72.67 0.56 1.22 16 23 O -0.39 -11.67 10.16 -148.98 -1.51 -13.19 16 24 H 0.05 2.04 5.74 -2.38 -0.01 2.03 16 25 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 2.58 6.55 -2.39 -0.02 2.56 16 28 H 0.04 1.47 7.75 -2.39 -0.02 1.45 16 29 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.05 1.93 5.74 -2.38 -0.01 1.91 16 31 H 0.27 15.32 8.30 -92.71 -0.77 14.55 16 32 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 33 H 0.11 2.93 7.16 -2.39 -0.02 2.91 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.10 1.31 7.70 -2.39 -0.02 1.29 16 36 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -78.31 313.08 4.60 -73.71 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 1.05 Total: 16.90 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 4.02 Total: -24.38 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -0.98 Total: -97.35 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -1.51 Total: -13.19 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -78.31 4.60 -73.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545089.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.093 kcal (2) G-P(sol) polarization free energy of solvation -78.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds