Wall clock time and date at job start Mon Mar 30 2020 05:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47231 * 2 1 4 4 H 1.08994 * 109.46845 * 55.00231 * 3 2 1 5 5 C 1.52994 * 109.47133 * 295.00148 * 3 2 1 6 6 N 1.46501 * 109.46986 * 175.00070 * 3 2 1 7 7 N 1.40130 * 126.49323 * 60.00172 * 6 3 2 8 8 N 1.28665 * 108.93524 * 179.74067 * 7 6 3 9 9 C 1.34844 * 109.63414 * 0.41777 * 8 7 6 10 10 C 1.41493 * 126.02035 * 179.84938 * 9 8 7 11 11 H 1.08000 * 120.00508 * 179.68647 * 10 9 8 12 12 C 1.39745 * 119.99743 * 359.68766 * 10 9 8 13 13 N 1.30983 * 120.00276 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99819 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47174 * 270.00046 * 14 12 10 16 16 H 1.48501 * 109.47062 * 29.99998 * 14 12 10 17 17 H 1.48494 * 109.47204 * 149.99517 * 14 12 10 18 18 C 1.35020 * 126.49462 * 240.00158 * 6 3 2 19 19 C 1.50697 * 126.77015 * 359.96149 * 18 6 3 20 20 H 1.09004 * 110.75026 * 359.32166 * 19 18 6 21 21 C 1.55313 * 110.84665 * 122.79006 * 19 18 6 22 22 C 1.55205 * 100.82351 * 152.18113 * 21 19 18 23 23 O 1.43646 * 105.26161 * 323.81558 * 22 21 19 24 24 C 1.43236 * 109.97285 * 24.28948 * 23 22 21 25 25 H 1.09003 * 109.46789 * 299.99937 * 1 2 3 26 26 H 1.08995 * 109.47413 * 59.99663 * 1 2 3 27 27 H 1.09004 * 109.47082 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46789 * 240.00063 * 2 1 3 29 29 H 1.09004 * 109.47235 * 120.00605 * 2 1 3 30 30 H 1.09000 * 109.46937 * 60.00057 * 5 3 2 31 31 H 1.08995 * 109.47068 * 179.97438 * 5 3 2 32 32 H 1.09008 * 109.47333 * 299.99806 * 5 3 2 33 33 H 0.97001 * 119.99794 * 179.97438 * 13 12 10 34 34 H 1.08996 * 111.12178 * 270.24406 * 21 19 18 35 35 H 1.09002 * 111.12001 * 34.40759 * 21 19 18 36 36 H 1.09001 * 110.36437 * 204.80237 * 22 21 19 37 37 H 1.08995 * 110.12883 * 82.71267 * 22 21 19 38 38 H 1.08996 * 109.83287 * 238.77764 * 24 23 22 39 39 H 1.09000 * 109.90826 * 117.83733 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 7 3.5000 1.4442 0.1204 7 7 4.4101 0.8538 -0.7667 8 7 5.6055 1.0636 -0.3396 9 6 5.5589 1.7664 0.8103 10 6 6.6731 2.1829 1.5766 11 1 6.5232 2.7487 2.4842 12 6 7.9675 1.8621 1.1590 13 7 8.1494 1.1754 0.0586 14 14 9.4385 2.4125 2.1704 15 1 9.8868 3.7495 1.7049 16 1 9.0533 2.4905 3.6025 17 1 10.5445 1.4351 2.0079 18 6 4.2238 2.0149 1.1070 19 6 3.6896 2.7726 2.2951 20 1 2.6011 2.8222 2.2639 21 6 4.1758 2.1316 3.6236 22 6 4.1699 3.3674 4.5627 23 8 4.5865 4.4691 3.7404 24 6 4.3023 4.1879 2.3650 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 0.5489 2.1252 -1.3968 31 1 1.9982 3.1543 -1.3071 32 1 2.0699 1.5875 -2.1492 33 1 9.0480 0.9531 -0.2314 34 1 3.4790 1.3681 3.9694 35 1 5.1814 1.7245 3.5183 36 1 4.8710 3.2224 5.3846 37 1 3.1651 3.5412 4.9475 38 1 5.2232 4.2212 1.7828 39 1 3.5924 4.9178 1.9759 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545112.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:27 Heat of formation + Delta-G solvation = 28.892425 kcal Electronic energy + Delta-G solvation = -21137.950002 eV Core-core repulsion = 18082.103421 eV Total energy + Delta-G solvation = -3055.846580 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.27584 -38.50716 -36.21668 -33.34842 -32.65893 -31.04640 -29.39624 -28.65739 -27.88105 -25.16286 -24.35775 -22.15184 -21.72399 -21.50449 -19.47800 -18.83095 -17.09915 -16.16203 -15.63400 -15.03608 -14.86433 -14.74018 -14.37395 -14.18104 -13.36825 -13.15570 -12.84008 -12.60128 -12.42699 -12.12161 -11.85784 -11.69563 -11.52888 -11.16972 -11.10751 -11.04094 -10.92346 -10.81554 -10.75092 -10.65632 -10.20202 -9.96962 -9.68272 -9.29640 -9.00294 -8.83123 -8.41170 -7.38104 -6.37714 -4.17249 2.78458 3.17763 3.22844 3.26307 3.55856 4.14805 4.28897 4.41253 4.83517 5.04889 5.14528 5.17616 5.35776 5.38831 5.43622 5.47357 5.58762 5.63092 5.65357 5.73591 5.84553 5.94087 6.00723 6.04382 6.12407 6.14411 6.20287 6.33475 6.39643 6.43800 6.67363 6.72577 7.00655 7.14665 7.39813 7.48365 7.53973 8.15924 8.44577 8.81506 9.08478 10.21336 10.58468 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.017717 B = 0.007846 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.062816 B = 3567.720274 C = 4687.076330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.163 3.837 4 H 0.085 0.915 5 C -0.158 4.158 6 N -0.371 5.371 7 N -0.124 5.124 8 N -0.231 5.231 9 C 0.161 3.839 10 C -0.450 4.450 11 H 0.088 0.912 12 C 0.074 3.926 13 N -0.773 5.773 14 Si 0.903 3.097 15 H -0.272 1.272 16 H -0.263 1.263 17 H -0.281 1.281 18 C -0.117 4.117 19 C -0.011 4.011 20 H 0.066 0.934 21 C -0.151 4.151 22 C 0.053 3.947 23 O -0.386 6.386 24 C 0.056 3.944 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.272 0.728 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.095 0.905 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.649 1.527 4.282 12.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C 0.059 3.941 4 H 0.103 0.897 5 C -0.216 4.216 6 N -0.167 5.167 7 N -0.100 5.100 8 N -0.103 5.103 9 C 0.031 3.969 10 C -0.486 4.486 11 H 0.106 0.894 12 C -0.146 4.146 13 N -0.399 5.399 14 Si 0.728 3.272 15 H -0.197 1.197 16 H -0.187 1.187 17 H -0.206 1.206 18 C -0.247 4.247 19 C -0.032 4.032 20 H 0.085 0.915 21 C -0.190 4.190 22 C -0.024 4.024 23 O -0.306 6.306 24 C -0.021 4.021 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.113 0.887 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.223 0.787 2.855 11.608 hybrid contribution 0.294 0.572 1.246 1.402 sum -10.929 1.359 4.101 11.752 Atomic orbital electron populations 1.21795 0.95256 1.01809 1.01806 1.21837 0.95533 0.95989 1.03463 1.20985 0.77391 0.96855 0.98891 0.89668 1.22141 1.00947 1.01021 0.97503 1.49562 1.05456 1.42218 1.19484 1.81448 0.93483 1.20013 1.15031 1.75129 1.09621 1.14651 1.10939 1.18920 0.90161 0.96098 0.91710 1.18690 0.88407 1.33151 1.08313 0.89386 1.25799 1.00135 0.93842 0.94789 1.70023 1.22932 1.28062 1.18892 0.86403 0.80890 0.78937 0.80988 1.19734 1.18748 1.20608 1.20943 0.92447 1.14354 0.97006 1.20495 0.97696 0.93435 0.91557 0.91536 1.23456 1.04625 0.97364 0.93518 1.23327 0.98698 0.86132 0.94211 1.88342 1.84114 1.40711 1.17401 1.23293 1.01489 0.94381 0.82973 0.92804 0.92290 0.92510 0.90696 0.91697 0.91479 0.92415 0.91290 0.91771 0.91125 0.87783 0.90268 0.93313 0.88710 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.67 37.16 0.36 -1.18 16 2 C -0.13 -1.84 5.67 -26.73 -0.15 -1.99 16 3 C 0.16 2.59 3.16 -67.93 -0.21 2.38 16 4 H 0.09 1.22 6.45 -51.93 -0.34 0.88 16 5 C -0.16 -2.23 9.22 37.15 0.34 -1.89 16 6 N -0.37 -7.93 3.29 -49.74 -0.16 -8.09 16 7 N -0.12 -3.16 13.62 60.35 0.82 -2.34 16 8 N -0.23 -6.60 10.55 32.05 0.34 -6.26 16 9 C 0.16 4.29 6.35 -85.02 -0.54 3.75 16 10 C -0.45 -11.87 7.09 -37.78 -0.27 -12.14 16 11 H 0.09 2.20 5.44 -52.49 -0.29 1.91 16 12 C 0.07 1.94 5.49 -17.35 -0.10 1.85 16 13 N -0.77 -21.69 11.92 55.54 0.66 -21.03 16 14 Si 0.90 19.69 29.56 -169.99 -5.02 14.66 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 16 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 C -0.12 -2.63 5.95 -80.91 -0.48 -3.11 16 19 C -0.01 -0.20 3.20 -89.82 -0.29 -0.48 16 20 H 0.07 1.06 6.55 -51.93 -0.34 0.72 16 21 C -0.15 -2.59 6.26 -24.34 -0.15 -2.74 16 22 C 0.05 0.81 7.78 38.33 0.30 1.11 16 23 O -0.39 -7.14 11.36 -35.23 -0.40 -7.54 16 24 C 0.06 1.03 6.70 37.88 0.25 1.29 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.72 6.56 -51.93 -0.34 0.38 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 33 H 0.27 7.04 8.30 -40.82 -0.34 6.70 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.10 2.08 5.87 -51.93 -0.31 1.78 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 2.04 6.04 -51.93 -0.31 1.73 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 311.37 15.07 4.69 4.69 Total: -1.00 -30.85 311.37 -5.63 -36.49 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.62 Total: 2.57 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -0.94 Total: -13.16 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 1.66 Total: -37.72 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.40 Total: -7.54 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.85 -5.63 -36.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545112.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.378 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds