Wall clock time and date at job start Mon Mar 30 2020 05:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47231 * 2 1 4 4 H 1.08994 * 109.46845 * 55.00231 * 3 2 1 5 5 C 1.52994 * 109.47133 * 295.00148 * 3 2 1 6 6 N 1.46501 * 109.46986 * 175.00070 * 3 2 1 7 7 N 1.40130 * 126.49323 * 60.00172 * 6 3 2 8 8 N 1.28665 * 108.93524 * 179.74067 * 7 6 3 9 9 C 1.34844 * 109.63414 * 0.41777 * 8 7 6 10 10 C 1.41493 * 126.02035 * 179.84938 * 9 8 7 11 11 H 1.08000 * 120.00508 * 179.68647 * 10 9 8 12 12 C 1.39745 * 119.99743 * 359.68766 * 10 9 8 13 13 N 1.30983 * 120.00276 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99819 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47174 * 270.00046 * 14 12 10 16 16 H 1.48501 * 109.47062 * 29.99998 * 14 12 10 17 17 H 1.48494 * 109.47204 * 149.99517 * 14 12 10 18 18 C 1.35020 * 126.49462 * 240.00158 * 6 3 2 19 19 C 1.50697 * 126.77015 * 359.96149 * 18 6 3 20 20 H 1.09004 * 110.75026 * 359.32166 * 19 18 6 21 21 C 1.55313 * 110.84665 * 122.79006 * 19 18 6 22 22 C 1.55205 * 100.82351 * 152.18113 * 21 19 18 23 23 O 1.43646 * 105.26161 * 323.81558 * 22 21 19 24 24 C 1.43236 * 109.97285 * 24.28948 * 23 22 21 25 25 H 1.09003 * 109.46789 * 299.99937 * 1 2 3 26 26 H 1.08995 * 109.47413 * 59.99663 * 1 2 3 27 27 H 1.09004 * 109.47082 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46789 * 240.00063 * 2 1 3 29 29 H 1.09004 * 109.47235 * 120.00605 * 2 1 3 30 30 H 1.09000 * 109.46937 * 60.00057 * 5 3 2 31 31 H 1.08995 * 109.47068 * 179.97438 * 5 3 2 32 32 H 1.09008 * 109.47333 * 299.99806 * 5 3 2 33 33 H 0.97001 * 119.99794 * 179.97438 * 13 12 10 34 34 H 1.08996 * 111.12178 * 270.24406 * 21 19 18 35 35 H 1.09002 * 111.12001 * 34.40759 * 21 19 18 36 36 H 1.09001 * 110.36437 * 204.80237 * 22 21 19 37 37 H 1.08995 * 110.12883 * 82.71267 * 22 21 19 38 38 H 1.08996 * 109.83287 * 238.77764 * 24 23 22 39 39 H 1.09000 * 109.90826 * 117.83733 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 7 3.5000 1.4442 0.1204 7 7 4.4101 0.8538 -0.7667 8 7 5.6055 1.0636 -0.3396 9 6 5.5589 1.7664 0.8103 10 6 6.6731 2.1829 1.5766 11 1 6.5232 2.7487 2.4842 12 6 7.9675 1.8621 1.1590 13 7 8.1494 1.1754 0.0586 14 14 9.4385 2.4125 2.1704 15 1 9.8868 3.7495 1.7049 16 1 9.0533 2.4905 3.6025 17 1 10.5445 1.4351 2.0079 18 6 4.2238 2.0149 1.1070 19 6 3.6896 2.7726 2.2951 20 1 2.6011 2.8222 2.2639 21 6 4.1758 2.1316 3.6236 22 6 4.1699 3.3674 4.5627 23 8 4.5865 4.4691 3.7404 24 6 4.3023 4.1879 2.3650 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 0.5489 2.1252 -1.3968 31 1 1.9982 3.1543 -1.3071 32 1 2.0699 1.5875 -2.1492 33 1 9.0480 0.9531 -0.2314 34 1 3.4790 1.3681 3.9694 35 1 5.1814 1.7245 3.5183 36 1 4.8710 3.2224 5.3846 37 1 3.1651 3.5412 4.9475 38 1 5.2232 4.2212 1.7828 39 1 3.5924 4.9178 1.9759 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545112.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:27 Heat of formation + Delta-G solvation = 7.920049 kcal Electronic energy + Delta-G solvation = -21138.859432 eV Core-core repulsion = 18082.103421 eV Total energy + Delta-G solvation = -3056.756011 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.07026 -39.94966 -37.57718 -35.22226 -34.22939 -32.54568 -30.91561 -30.00345 -29.47964 -26.95639 -25.68241 -23.65116 -23.25538 -22.90331 -21.15137 -20.44403 -18.81772 -17.66417 -17.13639 -16.61783 -16.50940 -15.99299 -15.93212 -15.59091 -14.89384 -14.57799 -14.22951 -14.08044 -13.73736 -13.51723 -13.21035 -12.99858 -12.87902 -12.75532 -12.66672 -12.50643 -12.38772 -12.21912 -12.14627 -11.92982 -11.72382 -11.55599 -11.40572 -11.14594 -10.72761 -10.36646 -10.18964 -9.29389 -8.30056 -6.16053 0.98961 1.42337 1.43150 1.55631 1.97157 2.32947 2.34079 3.05323 3.51145 3.60390 3.75705 3.83834 3.90013 4.07232 4.13305 4.29709 4.35182 4.41346 4.46652 4.49549 4.61610 4.72656 4.82277 4.88952 4.92178 4.94456 5.04745 5.07208 5.11032 5.17284 5.18924 5.31907 5.41784 5.44828 5.56130 5.68320 6.14350 6.43068 6.48885 6.90923 7.11744 8.32165 8.69029 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.017717 B = 0.007846 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.062816 B = 3567.720274 C = 4687.076330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.145 3.855 4 H 0.116 0.884 5 C -0.152 4.152 6 N -0.353 5.353 7 N -0.162 5.162 8 N -0.288 5.288 9 C 0.119 3.881 10 C -0.467 4.467 11 H 0.094 0.906 12 C 0.022 3.978 13 N -0.825 5.825 14 Si 0.973 3.027 15 H -0.269 1.269 16 H -0.253 1.253 17 H -0.278 1.278 18 C -0.083 4.083 19 C -0.014 4.014 20 H 0.105 0.895 21 C -0.149 4.149 22 C 0.054 3.946 23 O -0.402 6.402 24 C 0.062 3.938 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.111 0.889 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.271 0.729 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.818 2.703 6.512 16.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C 0.044 3.956 4 H 0.134 0.866 5 C -0.209 4.209 6 N -0.148 5.148 7 N -0.137 5.137 8 N -0.157 5.157 9 C -0.013 4.013 10 C -0.503 4.503 11 H 0.112 0.888 12 C -0.192 4.192 13 N -0.453 5.453 14 Si 0.795 3.205 15 H -0.195 1.195 16 H -0.176 1.176 17 H -0.203 1.203 18 C -0.218 4.218 19 C -0.035 4.035 20 H 0.123 0.877 21 C -0.187 4.187 22 C -0.021 4.021 23 O -0.322 6.322 24 C -0.016 4.016 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.130 0.870 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.447 1.937 5.049 15.426 hybrid contribution 1.003 0.233 0.607 1.195 sum -13.444 2.170 5.656 14.746 Atomic orbital electron populations 1.21758 0.91461 1.03118 1.03407 1.21781 0.98621 0.94131 1.01700 1.21670 0.73969 0.98840 1.01170 0.86613 1.22117 1.03634 0.99727 0.95464 1.50109 1.07583 1.39301 1.17778 1.81333 0.93510 1.22329 1.16482 1.75079 1.11258 1.16816 1.12581 1.19429 0.92262 0.97481 0.92160 1.18930 0.89028 1.33684 1.08688 0.88812 1.26685 1.03007 0.93752 0.95732 1.70182 1.23296 1.30641 1.21172 0.85329 0.77179 0.78300 0.79646 1.19452 1.17639 1.20296 1.21664 0.91586 1.11332 0.97188 1.20754 0.99712 0.92872 0.90118 0.87673 1.23408 1.03219 0.98850 0.93263 1.23542 1.01107 0.83998 0.93501 1.88326 1.84757 1.41857 1.17218 1.23123 1.00263 0.95026 0.83148 0.90920 0.90861 0.91517 0.92898 0.93216 0.87027 0.93213 0.93430 0.91932 0.88442 0.91373 0.89071 0.89626 0.92578 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.67 71.98 0.70 -1.61 16 2 C -0.12 -3.26 5.67 30.59 0.17 -3.08 16 3 C 0.15 4.24 3.16 44.99 0.14 4.38 16 4 H 0.12 2.72 6.45 -2.39 -0.02 2.70 16 5 C -0.15 -3.91 9.22 71.98 0.66 -3.25 16 6 N -0.35 -14.99 3.29 -311.29 -1.02 -16.02 16 7 N -0.16 -8.59 13.62 37.02 0.50 -8.08 16 8 N -0.29 -17.37 10.55 -52.52 -0.55 -17.93 16 9 C 0.12 6.61 6.35 39.67 0.25 6.86 16 10 C -0.47 -25.64 7.09 23.44 0.17 -25.47 16 11 H 0.09 4.83 5.44 -2.91 -0.02 4.81 16 12 C 0.02 1.22 5.49 85.18 0.47 1.69 16 13 N -0.82 -49.09 11.92 21.80 0.26 -48.83 16 14 Si 0.97 41.93 29.56 68.60 2.03 43.96 16 15 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 16 H -0.25 -10.28 7.11 99.48 0.71 -9.58 16 17 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 18 C -0.08 -3.71 5.95 42.25 0.25 -3.45 16 19 C -0.01 -0.46 3.20 -10.28 -0.03 -0.50 16 20 H 0.11 2.79 6.55 -2.38 -0.02 2.77 16 21 C -0.15 -4.69 6.26 32.15 0.20 -4.49 16 22 C 0.05 1.46 7.78 72.74 0.57 2.03 16 23 O -0.40 -13.74 11.36 -148.98 -1.69 -15.43 16 24 C 0.06 2.17 6.70 72.45 0.49 2.66 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 1.02 6.56 -2.39 -0.02 1.01 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.11 1.90 6.56 -2.39 -0.02 1.88 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.27 14.96 8.30 -92.71 -0.77 14.19 16 34 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.07 2.69 5.87 -2.39 -0.01 2.67 16 36 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 2.43 6.04 -2.39 -0.01 2.42 16 39 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -73.34 311.37 4.60 -68.74 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 1.05 Total: 17.84 kcal Atomic # 6 Polarization: -28.28 SS G_CDS: 4.03 Total: -24.25 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -0.81 Total: -90.86 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -1.69 Total: -15.43 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -73.34 4.60 -68.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545112.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.655 kcal (2) G-P(sol) polarization free energy of solvation -73.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds