Wall clock time and date at job start Mon Mar 30 2020 05:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 C 1.52993 * 109.47345 * 65.00157 * 3 2 1 6 6 N 1.46497 * 109.46926 * 185.00195 * 3 2 1 7 7 N 1.40129 * 126.49238 * 300.02262 * 6 3 2 8 8 N 1.28664 * 108.93777 * 179.97438 * 7 6 3 9 9 C 1.34846 * 109.63556 * 359.97438 * 8 7 6 10 10 C 1.41489 * 126.01955 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99972 * 179.97438 * 10 9 8 12 12 C 1.39734 * 120.00255 * 359.97438 * 10 9 8 13 13 N 1.30976 * 120.00280 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99868 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47216 * 60.00451 * 14 12 10 16 16 H 1.48507 * 109.46745 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47590 * 300.00219 * 14 12 10 18 18 C 1.35023 * 126.49784 * 119.71047 * 6 3 2 19 19 C 1.50705 * 126.76762 * 0.02562 * 18 6 3 20 20 H 1.08998 * 110.75263 * 359.30011 * 19 18 6 21 21 C 1.55302 * 110.84558 * 122.77034 * 19 18 6 22 22 C 1.55207 * 100.82441 * 152.17677 * 21 19 18 23 23 O 1.43644 * 105.26046 * 323.81909 * 22 21 19 24 24 C 1.43229 * 109.97479 * 24.28359 * 23 22 21 25 25 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 30 30 H 1.09002 * 109.47179 * 299.99584 * 5 3 2 31 31 H 1.08993 * 109.47639 * 59.99724 * 5 3 2 32 32 H 1.09004 * 109.47135 * 179.97438 * 5 3 2 33 33 H 0.96998 * 120.00594 * 180.02562 * 13 12 10 34 34 H 1.08995 * 111.12829 * 270.24065 * 21 19 18 35 35 H 1.08996 * 111.12667 * 34.40984 * 21 19 18 36 36 H 1.08992 * 110.37264 * 204.79705 * 22 21 19 37 37 H 1.09001 * 110.21307 * 82.75221 * 22 21 19 38 38 H 1.09008 * 109.83321 * 238.77697 * 24 23 22 39 39 H 1.09003 * 109.91178 * 117.84435 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 7 3.5000 1.4442 -0.1204 7 7 4.4100 0.8534 0.7664 8 7 5.6052 1.0583 0.3362 9 6 5.5588 1.7654 -0.8111 10 6 6.6730 2.1815 -1.5776 11 1 6.5229 2.7463 -2.4858 12 6 7.9674 1.8616 -1.1596 13 7 8.1494 1.1761 -0.0585 14 14 9.4382 2.4103 -2.1721 15 1 9.4481 3.8922 -2.2678 16 1 10.6891 1.9476 -1.5189 17 1 9.3468 1.8269 -3.5346 18 6 4.2235 2.0103 -1.1100 19 6 3.6889 2.7617 -2.3019 20 1 2.5994 2.7899 -2.2838 21 6 4.2781 4.1974 -2.3599 22 6 4.2247 4.4730 -3.8864 23 8 4.5241 3.2134 -4.5086 24 6 4.2006 2.1389 -3.6187 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5489 2.1253 1.3969 31 1 2.0698 1.5876 2.1491 32 1 1.9990 3.1541 1.3074 33 1 9.0479 0.9543 0.2319 34 1 3.6541 4.9007 -1.8084 35 1 5.3048 4.2158 -1.9945 36 1 4.9698 5.2186 -4.1636 37 1 3.2286 4.8096 -4.1737 38 1 5.0902 1.5399 -3.4232 39 1 3.4235 1.5137 -4.0585 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545138.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:32 Heat of formation + Delta-G solvation = 28.916739 kcal Electronic energy + Delta-G solvation = -21137.471159 eV Core-core repulsion = 18081.625632 eV Total energy + Delta-G solvation = -3055.845526 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.27505 -38.50852 -36.21507 -33.34966 -32.66017 -31.03921 -29.40834 -28.65400 -27.87528 -25.16979 -24.35426 -22.13886 -21.72038 -21.52023 -19.47587 -18.83080 -17.09599 -16.15362 -15.63688 -15.08348 -14.86228 -14.73930 -14.29064 -14.19543 -13.42170 -13.14386 -12.84485 -12.58844 -12.40727 -12.12561 -11.85146 -11.69270 -11.55619 -11.14129 -11.13321 -11.02478 -10.91873 -10.82030 -10.74798 -10.65858 -10.21590 -9.96916 -9.69306 -9.28596 -9.00329 -8.83097 -8.41034 -7.38109 -6.37495 -4.17241 2.78780 3.19415 3.21914 3.25071 3.55979 4.14802 4.28988 4.41213 4.83661 5.04568 5.14598 5.18784 5.35808 5.38208 5.43452 5.47938 5.60234 5.60789 5.66629 5.73279 5.84450 5.93460 6.01425 6.04916 6.12192 6.14703 6.20307 6.33451 6.39104 6.44463 6.67374 6.72371 7.00599 7.14730 7.39823 7.48356 7.54052 8.15997 8.44130 8.81568 9.08421 10.21409 10.58658 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.017709 B = 0.007848 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.698540 B = 3566.815694 C = 4685.227785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.163 3.837 4 H 0.085 0.915 5 C -0.157 4.157 6 N -0.371 5.371 7 N -0.124 5.124 8 N -0.231 5.231 9 C 0.161 3.839 10 C -0.450 4.450 11 H 0.088 0.912 12 C 0.074 3.926 13 N -0.773 5.773 14 Si 0.903 3.097 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.267 1.267 18 C -0.117 4.117 19 C -0.011 4.011 20 H 0.066 0.934 21 C -0.152 4.152 22 C 0.053 3.947 23 O -0.386 6.386 24 C 0.056 3.944 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.272 0.728 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.095 0.905 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.542 3.384 -3.130 12.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C 0.059 3.941 4 H 0.103 0.897 5 C -0.216 4.216 6 N -0.167 5.167 7 N -0.100 5.100 8 N -0.103 5.103 9 C 0.031 3.969 10 C -0.486 4.486 11 H 0.106 0.894 12 C -0.145 4.145 13 N -0.399 5.399 14 Si 0.728 3.272 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.191 1.191 18 C -0.248 4.248 19 C -0.032 4.032 20 H 0.085 0.915 21 C -0.190 4.190 22 C -0.024 4.024 23 O -0.306 6.306 24 C -0.021 4.021 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.113 0.887 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.125 2.421 -1.835 11.532 hybrid contribution 0.302 0.837 -1.100 1.414 sum -10.822 3.257 -2.934 11.677 Atomic orbital electron populations 1.21794 0.95252 1.01827 1.01793 1.21844 0.95545 0.95987 1.03497 1.20985 0.77391 0.96863 0.98880 0.89669 1.22134 1.00930 1.00986 0.97511 1.49561 1.05458 1.42337 1.19367 1.81447 0.93501 1.19891 1.15133 1.75129 1.09628 1.14590 1.10999 1.18910 0.90140 0.96060 0.91742 1.18649 0.88423 1.33319 1.08204 0.89444 1.25790 1.00117 0.93874 0.94749 1.70006 1.23048 1.28041 1.18827 0.86466 0.80370 0.79772 0.80604 1.19279 1.20680 1.19132 1.20944 0.92437 1.14454 0.96940 1.20494 0.97715 0.93597 0.91375 0.91533 1.23455 1.04572 0.95495 0.95455 1.23326 0.99458 0.87137 0.92458 1.88341 1.86786 1.14504 1.40941 1.23291 1.01196 0.89760 0.87869 0.92788 0.92495 0.92317 0.91651 0.90686 0.91482 0.91305 0.92462 0.91705 0.91119 0.87772 0.90276 0.93311 0.88719 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.67 37.16 0.36 -1.19 16 2 C -0.13 -1.85 5.67 -26.73 -0.15 -2.00 16 3 C 0.16 2.59 3.16 -67.94 -0.21 2.38 16 4 H 0.09 1.22 6.45 -51.93 -0.34 0.88 16 5 C -0.16 -2.22 9.22 37.15 0.34 -1.88 16 6 N -0.37 -7.93 3.29 -49.74 -0.16 -8.10 16 7 N -0.12 -3.16 13.62 60.35 0.82 -2.33 16 8 N -0.23 -6.60 10.56 32.05 0.34 -6.26 16 9 C 0.16 4.30 6.35 -85.02 -0.54 3.76 16 10 C -0.45 -11.88 7.09 -37.79 -0.27 -12.15 16 11 H 0.09 2.18 5.44 -52.48 -0.29 1.90 16 12 C 0.07 1.95 5.49 -17.36 -0.10 1.86 16 13 N -0.77 -21.69 11.92 55.54 0.66 -21.03 16 14 Si 0.90 19.69 29.56 -169.99 -5.02 14.66 16 15 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 18 C -0.12 -2.63 5.95 -80.90 -0.48 -3.12 16 19 C -0.01 -0.20 3.20 -89.82 -0.29 -0.48 16 20 H 0.07 1.06 6.55 -51.93 -0.34 0.72 16 21 C -0.15 -2.59 6.26 -24.34 -0.15 -2.74 16 22 C 0.05 0.81 7.78 38.33 0.30 1.11 16 23 O -0.39 -7.14 11.36 -35.23 -0.40 -7.54 16 24 C 0.06 1.04 6.70 37.88 0.25 1.29 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.07 0.72 6.57 -51.93 -0.34 0.38 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.27 7.07 8.30 -40.82 -0.34 6.73 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.10 2.08 5.85 -51.93 -0.30 1.77 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 2.04 6.06 -51.92 -0.31 1.73 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 311.37 15.07 4.69 4.69 Total: -1.00 -30.83 311.37 -5.63 -36.46 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.62 Total: 2.61 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -0.94 Total: -13.16 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 1.66 Total: -37.73 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.40 Total: -7.54 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.83 -5.63 -36.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545138.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.381 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds