Wall clock time and date at job start Mon Mar 30 2020 05:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 C 1.52993 * 109.47345 * 65.00157 * 3 2 1 6 6 N 1.46497 * 109.46926 * 185.00195 * 3 2 1 7 7 N 1.40129 * 126.49238 * 300.02262 * 6 3 2 8 8 N 1.28664 * 108.93777 * 179.97438 * 7 6 3 9 9 C 1.34846 * 109.63556 * 359.97438 * 8 7 6 10 10 C 1.41489 * 126.01955 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99972 * 179.97438 * 10 9 8 12 12 C 1.39734 * 120.00255 * 359.97438 * 10 9 8 13 13 N 1.30976 * 120.00280 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99868 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47216 * 60.00451 * 14 12 10 16 16 H 1.48507 * 109.46745 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47590 * 300.00219 * 14 12 10 18 18 C 1.35023 * 126.49784 * 119.71047 * 6 3 2 19 19 C 1.50705 * 126.76762 * 0.02562 * 18 6 3 20 20 H 1.08998 * 110.75263 * 359.30011 * 19 18 6 21 21 C 1.55302 * 110.84558 * 122.77034 * 19 18 6 22 22 C 1.55207 * 100.82441 * 152.17677 * 21 19 18 23 23 O 1.43644 * 105.26046 * 323.81909 * 22 21 19 24 24 C 1.43229 * 109.97479 * 24.28359 * 23 22 21 25 25 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 30 30 H 1.09002 * 109.47179 * 299.99584 * 5 3 2 31 31 H 1.08993 * 109.47639 * 59.99724 * 5 3 2 32 32 H 1.09004 * 109.47135 * 179.97438 * 5 3 2 33 33 H 0.96998 * 120.00594 * 180.02562 * 13 12 10 34 34 H 1.08995 * 111.12829 * 270.24065 * 21 19 18 35 35 H 1.08996 * 111.12667 * 34.40984 * 21 19 18 36 36 H 1.08992 * 110.37264 * 204.79705 * 22 21 19 37 37 H 1.09001 * 110.21307 * 82.75221 * 22 21 19 38 38 H 1.09008 * 109.83321 * 238.77697 * 24 23 22 39 39 H 1.09003 * 109.91178 * 117.84435 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 7 3.5000 1.4442 -0.1204 7 7 4.4100 0.8534 0.7664 8 7 5.6052 1.0583 0.3362 9 6 5.5588 1.7654 -0.8111 10 6 6.6730 2.1815 -1.5776 11 1 6.5229 2.7463 -2.4858 12 6 7.9674 1.8616 -1.1596 13 7 8.1494 1.1761 -0.0585 14 14 9.4382 2.4103 -2.1721 15 1 9.4481 3.8922 -2.2678 16 1 10.6891 1.9476 -1.5189 17 1 9.3468 1.8269 -3.5346 18 6 4.2235 2.0103 -1.1100 19 6 3.6889 2.7617 -2.3019 20 1 2.5994 2.7899 -2.2838 21 6 4.2781 4.1974 -2.3599 22 6 4.2247 4.4730 -3.8864 23 8 4.5241 3.2134 -4.5086 24 6 4.2006 2.1389 -3.6187 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5489 2.1253 1.3969 31 1 2.0698 1.5876 2.1491 32 1 1.9990 3.1541 1.3074 33 1 9.0479 0.9543 0.2319 34 1 3.6541 4.9007 -1.8084 35 1 5.3048 4.2158 -1.9945 36 1 4.9698 5.2186 -4.1636 37 1 3.2286 4.8096 -4.1737 38 1 5.0902 1.5399 -3.4232 39 1 3.4235 1.5137 -4.0585 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545138.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:31 Heat of formation + Delta-G solvation = 7.957654 kcal Electronic energy + Delta-G solvation = -21138.380013 eV Core-core repulsion = 18081.625632 eV Total energy + Delta-G solvation = -3056.754380 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.06952 -39.95129 -37.57735 -35.22391 -34.23095 -32.54231 -30.91845 -30.01612 -29.46337 -26.96071 -25.68453 -23.64127 -23.24193 -22.92745 -21.14944 -20.44394 -18.81595 -17.65197 -17.14040 -16.63001 -16.55268 -15.96311 -15.89437 -15.59804 -14.88554 -14.63342 -14.20387 -14.06822 -13.75073 -13.49399 -13.22510 -12.99747 -12.86306 -12.74893 -12.66997 -12.52100 -12.40027 -12.21711 -12.12461 -11.95174 -11.72889 -11.56473 -11.41071 -11.12808 -10.72670 -10.36912 -10.18832 -9.29423 -8.29873 -6.16054 0.99159 1.42324 1.44873 1.53713 1.97260 2.32770 2.34397 3.05283 3.51238 3.60327 3.75407 3.83212 3.91587 4.07288 4.11862 4.30027 4.36145 4.40757 4.46423 4.49522 4.61687 4.72535 4.82274 4.88916 4.92568 4.94211 5.04969 5.07202 5.10900 5.17252 5.18625 5.32062 5.41562 5.44933 5.56041 5.68361 6.14282 6.42782 6.48867 6.90961 7.11677 8.32196 8.69043 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.017709 B = 0.007848 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.698540 B = 3566.815694 C = 4685.227785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.145 3.855 4 H 0.116 0.884 5 C -0.150 4.150 6 N -0.353 5.353 7 N -0.162 5.162 8 N -0.288 5.288 9 C 0.120 3.880 10 C -0.468 4.468 11 H 0.094 0.906 12 C 0.023 3.977 13 N -0.824 5.824 14 Si 0.973 3.027 15 H -0.258 1.258 16 H -0.279 1.279 17 H -0.263 1.263 18 C -0.084 4.084 19 C -0.014 4.014 20 H 0.105 0.895 21 C -0.149 4.149 22 C 0.054 3.946 23 O -0.402 6.402 24 C 0.062 3.938 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.111 0.889 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.271 0.729 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.666 5.168 -4.981 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.044 3.956 4 H 0.134 0.866 5 C -0.208 4.208 6 N -0.148 5.148 7 N -0.136 5.136 8 N -0.157 5.157 9 C -0.013 4.013 10 C -0.504 4.504 11 H 0.112 0.888 12 C -0.191 4.191 13 N -0.453 5.453 14 Si 0.795 3.205 15 H -0.182 1.182 16 H -0.204 1.204 17 H -0.187 1.187 18 C -0.218 4.218 19 C -0.035 4.035 20 H 0.123 0.877 21 C -0.187 4.187 22 C -0.022 4.022 23 O -0.322 6.322 24 C -0.015 4.015 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.130 0.870 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.302 4.188 -3.643 15.342 hybrid contribution 0.997 0.326 -0.570 1.194 sum -13.305 4.514 -4.213 14.668 Atomic orbital electron populations 1.21756 0.91445 1.03120 1.03415 1.21792 0.98654 0.94217 1.01685 1.21669 0.73968 0.98784 1.01222 0.86618 1.22106 1.03609 0.99736 0.95380 1.50106 1.07582 1.39381 1.17707 1.81331 0.93532 1.22154 1.16628 1.75079 1.11264 1.16737 1.12660 1.19420 0.92243 0.97439 0.92187 1.18897 0.89049 1.33913 1.08557 0.88832 1.26678 1.02998 0.93780 0.95685 1.70169 1.23375 1.30610 1.21120 0.85392 0.76669 0.79648 0.78776 1.18190 1.20407 1.18718 1.21664 0.91574 1.11413 0.97161 1.20752 0.99792 0.93801 0.89105 0.87680 1.23408 1.02897 0.95031 0.97402 1.23545 1.01994 0.86093 0.90544 1.88325 1.87302 1.15484 1.41062 1.23116 1.00175 0.89990 0.88254 0.90945 0.91544 0.90795 0.93308 0.92855 0.87037 0.93467 0.93138 0.91908 0.88385 0.91336 0.89020 0.89637 0.92637 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.67 71.98 0.70 -1.64 16 2 C -0.12 -3.32 5.67 30.59 0.17 -3.15 16 3 C 0.15 4.24 3.16 44.99 0.14 4.38 16 4 H 0.12 2.72 6.45 -2.39 -0.02 2.71 16 5 C -0.15 -3.84 9.22 71.98 0.66 -3.18 16 6 N -0.35 -15.00 3.29 -311.28 -1.02 -16.03 16 7 N -0.16 -8.58 13.62 37.02 0.50 -8.08 16 8 N -0.29 -17.38 10.56 -52.52 -0.55 -17.93 16 9 C 0.12 6.63 6.35 39.67 0.25 6.89 16 10 C -0.47 -25.70 7.09 23.43 0.17 -25.53 16 11 H 0.09 4.81 5.44 -2.91 -0.02 4.80 16 12 C 0.02 1.24 5.49 85.18 0.47 1.71 16 13 N -0.82 -49.09 11.92 21.79 0.26 -48.83 16 14 Si 0.97 41.90 29.56 68.60 2.03 43.93 16 15 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 16 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 18 C -0.08 -3.73 5.95 42.26 0.25 -3.48 16 19 C -0.01 -0.46 3.20 -10.28 -0.03 -0.49 16 20 H 0.11 2.79 6.55 -2.39 -0.02 2.77 16 21 C -0.15 -4.68 6.26 32.14 0.20 -4.48 16 22 C 0.05 1.45 7.78 72.74 0.57 2.02 16 23 O -0.40 -13.76 11.36 -148.98 -1.69 -15.46 16 24 C 0.06 2.19 6.70 72.45 0.49 2.67 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 1.03 6.57 -2.39 -0.02 1.02 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.11 1.87 6.57 -2.39 -0.02 1.86 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.27 15.01 8.30 -92.71 -0.77 14.24 16 34 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.07 2.69 5.85 -2.39 -0.01 2.68 16 36 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 2.42 6.06 -2.38 -0.01 2.40 16 39 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -73.34 311.37 4.60 -68.73 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 1.05 Total: 17.94 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: 4.03 Total: -24.28 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -0.81 Total: -90.87 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -1.69 Total: -15.46 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -73.34 4.60 -68.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545138.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.689 kcal (2) G-P(sol) polarization free energy of solvation -73.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds