Wall clock time and date at job start Mon Mar 30 2020 05:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53011 * 109.46763 * 2 1 4 4 H 1.08999 * 109.46840 * 304.99985 * 3 2 1 5 5 C 1.52995 * 109.47009 * 184.99837 * 3 2 1 6 6 O 1.42903 * 109.47022 * 65.00211 * 5 3 2 7 7 N 1.46500 * 109.46607 * 65.00236 * 3 2 1 8 8 N 1.40119 * 126.49652 * 60.00302 * 7 3 2 9 9 N 1.28669 * 108.93606 * 179.71824 * 8 7 3 10 10 C 1.34846 * 109.63347 * 0.44784 * 9 8 7 11 11 C 1.41492 * 126.02037 * 179.81192 * 10 9 8 12 12 H 1.07997 * 120.00074 * 187.02355 * 11 10 9 13 13 C 1.39739 * 119.99875 * 6.75391 * 11 10 9 14 14 N 1.30979 * 120.00090 * 356.28373 * 13 11 10 15 15 Si 1.86807 * 119.99821 * 176.28315 * 13 11 10 16 16 H 1.48502 * 109.47031 * 94.84609 * 15 13 11 17 17 H 1.48498 * 109.47105 * 214.84681 * 15 13 11 18 18 H 1.48494 * 109.47125 * 334.84653 * 15 13 11 19 19 C 1.35022 * 126.48757 * 239.99583 * 7 3 2 20 20 C 1.50702 * 126.77507 * 0.03774 * 19 7 3 21 21 C 1.53776 * 113.61929 * 224.09405 * 20 19 7 22 22 C 1.53777 * 87.08177 * 220.02119 * 21 20 19 23 23 C 1.53778 * 113.61323 * 126.58995 * 20 19 7 24 24 H 1.09003 * 109.46369 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46997 * 299.99652 * 1 2 3 26 26 H 1.08997 * 109.46899 * 59.99892 * 1 2 3 27 27 H 1.08999 * 109.47416 * 240.00648 * 2 1 3 28 28 H 1.08995 * 109.47397 * 119.99954 * 2 1 3 29 29 H 1.08995 * 109.47146 * 184.99953 * 5 3 2 30 30 H 1.09005 * 109.47752 * 305.00447 * 5 3 2 31 31 H 0.96703 * 114.00398 * 179.97438 * 6 5 3 32 32 H 0.97001 * 119.99783 * 180.02562 * 14 13 11 33 33 H 1.09010 * 112.84630 * 355.39888 * 20 19 7 34 34 H 1.09010 * 113.60902 * 334.56584 * 21 20 19 35 35 H 1.08994 * 113.61989 * 105.46561 * 21 20 19 36 36 H 1.09002 * 113.61063 * 270.88337 * 22 21 20 37 37 H 1.09000 * 113.69182 * 139.99236 * 22 21 20 38 38 H 1.08994 * 113.61923 * 254.53108 * 23 20 19 39 39 H 1.09003 * 113.61315 * 25.35485 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5647 1.4445 -0.1257 6 8 3.9385 0.9115 -1.3978 7 7 1.6523 2.0975 1.2519 8 7 2.0137 1.7011 2.5463 9 7 1.4935 2.5179 3.3936 10 6 0.7797 3.4561 2.7390 11 6 0.0611 4.5201 3.3335 12 1 -0.5708 5.1509 2.7259 13 6 0.1646 4.7512 4.7077 14 7 0.8685 3.9398 5.4571 15 14 -0.7009 6.2176 5.4760 16 1 -2.0225 5.7921 6.0029 17 1 0.1256 6.7539 6.5871 18 1 -0.8939 7.2725 4.4489 19 6 0.8793 3.1974 1.3768 20 6 0.2481 3.9881 0.2598 21 6 0.3818 5.5105 0.4307 22 6 -1.0611 5.6166 -0.0904 23 6 -1.2687 4.1820 0.4231 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.9354 2.4656 -0.0366 30 1 3.9954 0.8313 0.6659 31 1 4.8935 0.8827 -1.5471 32 1 0.9400 4.1000 6.4111 33 1 0.5388 3.6310 -0.7283 34 1 0.4956 5.8250 1.4682 35 1 1.1200 5.9612 -0.2326 36 1 -1.1282 5.7062 -1.1746 37 1 -1.6625 6.3594 0.4338 38 1 -1.8630 3.5604 -0.2464 39 1 -1.6063 4.1320 1.4583 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545174.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:41 Heat of formation + Delta-G solvation = 49.364123 kcal Electronic energy + Delta-G solvation = -21157.986163 eV Core-core repulsion = 18103.027302 eV Total energy + Delta-G solvation = -3054.958861 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.29029 -37.75239 -37.28968 -34.83477 -33.16858 -31.01561 -29.50686 -28.21394 -25.80451 -24.88989 -24.03802 -23.39474 -22.00411 -20.16182 -19.18787 -18.38766 -17.59963 -16.68848 -15.64306 -14.98770 -14.84386 -14.69748 -14.49827 -14.08935 -13.66525 -13.13511 -12.86607 -12.63633 -12.18728 -11.83552 -11.69795 -11.54762 -11.40273 -11.18234 -11.15175 -10.92814 -10.78977 -10.64946 -10.35096 -9.94962 -9.92204 -9.81004 -9.65124 -9.50614 -9.24035 -8.79142 -8.39166 -7.33166 -6.35613 -4.13885 2.80352 3.15339 3.21256 3.23621 3.43138 4.13793 4.32621 4.46313 4.89077 5.19647 5.23557 5.32749 5.34540 5.42342 5.50655 5.56147 5.61142 5.75275 5.77956 5.91638 5.98249 6.05807 6.11221 6.18739 6.29548 6.43514 6.45054 6.47547 6.57690 6.78041 6.80990 6.88393 7.17830 7.26038 7.46940 7.56946 7.59246 8.17924 8.44482 8.85528 9.10921 10.23807 10.61362 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.020256 B = 0.007132 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.962912 B = 3925.091268 C = 4583.238774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.171 3.829 4 H 0.094 0.906 5 C 0.071 3.929 6 O -0.573 6.573 7 N -0.369 5.369 8 N -0.134 5.134 9 N -0.228 5.228 10 C 0.157 3.843 11 C -0.453 4.453 12 H 0.090 0.910 13 C 0.074 3.926 14 N -0.776 5.776 15 Si 0.900 3.100 16 H -0.274 1.274 17 H -0.280 1.280 18 H -0.264 1.264 19 C -0.095 4.095 20 C -0.011 4.011 21 C -0.137 4.137 22 C -0.144 4.144 23 C -0.131 4.131 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.380 0.620 32 H 0.271 0.729 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 -0.948 -11.250 11.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.066 3.934 4 H 0.112 0.888 5 C -0.008 4.008 6 O -0.377 6.377 7 N -0.166 5.166 8 N -0.109 5.109 9 N -0.100 5.100 10 C 0.027 3.973 11 C -0.489 4.489 12 H 0.108 0.892 13 C -0.145 4.145 14 N -0.403 5.403 15 Si 0.725 3.275 16 H -0.199 1.199 17 H -0.206 1.206 18 H -0.188 1.188 19 C -0.226 4.226 20 C -0.032 4.032 21 C -0.175 4.175 22 C -0.182 4.182 23 C -0.169 4.169 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.227 0.773 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.772 -2.120 -10.223 10.469 hybrid contribution -0.207 1.385 -0.223 1.418 sum 0.565 -0.735 -10.446 10.487 Atomic orbital electron populations 1.21713 0.95421 1.01198 1.02229 1.21793 0.96540 0.94986 1.02913 1.20734 0.93344 0.94638 0.84658 0.88847 1.22425 0.95273 0.98043 0.85057 1.86369 1.28509 1.86692 1.36155 1.49400 1.38889 1.22006 1.06318 1.81464 1.23992 1.22475 0.82994 1.75107 1.10032 1.02782 1.22052 1.18886 0.97156 0.95219 0.86061 1.18689 1.25999 1.11775 0.92466 0.89235 1.25785 0.94571 0.96654 0.97518 1.70020 1.31303 1.33014 1.05937 0.86441 0.79642 0.82098 0.79310 1.19938 1.20559 1.18772 1.21352 1.08665 0.95927 0.96625 1.20436 0.95007 0.93988 0.93725 1.23168 0.95308 0.95364 1.03684 1.22777 0.98122 0.97806 0.99454 1.23039 0.95704 0.95492 1.02682 0.92985 0.92065 0.93122 0.90468 0.90907 0.93266 0.92259 0.77280 0.91884 0.91020 0.86937 0.93047 0.91434 0.91811 0.92950 0.88143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.80 37.16 0.36 -1.94 16 2 C -0.12 -1.95 5.51 -26.72 -0.15 -2.09 16 3 C 0.17 2.94 2.78 -67.93 -0.19 2.75 16 4 H 0.09 1.53 6.54 -51.93 -0.34 1.19 16 5 C 0.07 1.08 6.70 37.16 0.25 1.33 16 6 O -0.57 -7.22 13.11 -35.23 -0.46 -7.69 16 7 N -0.37 -7.98 2.74 -49.73 -0.14 -8.11 16 8 N -0.13 -3.41 13.62 60.35 0.82 -2.58 16 9 N -0.23 -6.49 10.58 32.05 0.34 -6.15 16 10 C 0.16 4.17 6.54 -85.02 -0.56 3.61 16 11 C -0.45 -11.78 7.11 -37.78 -0.27 -12.05 16 12 H 0.09 2.14 4.61 -52.49 -0.24 1.90 16 13 C 0.07 1.92 5.49 -17.35 -0.10 1.82 16 14 N -0.78 -21.70 11.94 55.54 0.66 -21.04 16 15 Si 0.90 19.26 29.56 -169.99 -5.03 14.24 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 19 C -0.09 -2.14 6.34 -80.90 -0.51 -2.66 16 20 C -0.01 -0.20 4.01 -90.96 -0.36 -0.56 16 21 C -0.14 -2.42 7.17 -25.92 -0.19 -2.60 16 22 C -0.14 -2.19 8.08 -25.92 -0.21 -2.40 16 23 C -0.13 -2.26 7.19 -25.92 -0.19 -2.45 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.15 7.75 -51.93 -0.40 0.75 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.08 1.07 7.69 -51.93 -0.40 0.67 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.38 2.97 9.12 45.56 0.42 3.38 16 32 H 0.27 6.99 8.30 -40.82 -0.34 6.65 16 33 H 0.07 1.21 6.73 -51.92 -0.35 0.86 16 34 H 0.11 2.29 5.27 -51.92 -0.27 2.01 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 1.98 6.10 -51.93 -0.32 1.66 16 LS Contribution 314.99 15.07 4.75 4.75 Total: -1.00 -30.77 314.99 -6.00 -36.77 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.85 Total: 7.07 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -2.10 Total: -17.24 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 1.69 Total: -37.89 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.46 Total: -7.69 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.77 -6.00 -36.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545174.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.132 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds