Wall clock time and date at job start Mon Mar 30 2020 04:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47505 * 2 1 4 4 C 1.50701 * 109.47332 * 120.00560 * 2 1 3 5 5 C 1.39012 * 126.77072 * 300.12742 * 4 2 1 6 6 C 1.41495 * 126.02134 * 0.03835 * 5 4 2 7 7 H 1.07995 * 120.00285 * 0.24739 * 6 5 4 8 8 C 1.39742 * 119.99977 * 180.24675 * 6 5 4 9 9 N 1.30988 * 120.00040 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99769 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47253 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46809 * 120.00385 * 10 8 6 13 13 H 1.48503 * 109.46828 * 239.99635 * 10 8 6 14 14 N 1.34846 * 107.95829 * 180.26919 * 5 4 2 15 15 N 1.28665 * 109.63189 * 359.76675 * 14 5 4 16 16 N 1.35020 * 126.77206 * 119.99710 * 4 2 1 17 17 C 1.46502 * 126.49236 * 0.02562 * 16 4 2 18 18 C 1.53005 * 109.46658 * 265.03315 * 17 16 4 19 19 C 1.53001 * 115.54597 * 151.58981 * 18 17 16 20 20 O 1.42901 * 109.47169 * 321.03411 * 19 18 17 21 21 C 1.52998 * 117.49745 * 297.25416 * 18 17 16 22 22 C 1.52999 * 60.02961 * 107.50475 * 21 18 17 23 23 H 1.09004 * 109.46489 * 299.99638 * 1 2 3 24 24 H 1.08991 * 109.47489 * 59.99550 * 1 2 3 25 25 H 1.08997 * 109.47351 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46964 * 240.00298 * 2 1 3 27 27 H 1.09004 * 109.47551 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47086 * 300.00959 * 3 2 1 29 29 H 1.08999 * 109.46767 * 60.00177 * 3 2 1 30 30 H 0.96992 * 120.00012 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.46934 * 145.03677 * 17 16 4 32 32 H 1.08997 * 109.46956 * 25.03311 * 17 16 4 33 33 H 1.08999 * 109.47487 * 81.03700 * 19 18 17 34 34 H 1.08995 * 109.46858 * 201.03882 * 19 18 17 35 35 H 0.96696 * 114.00420 * 180.02562 * 20 19 18 36 36 H 1.09002 * 117.49462 * 215.00092 * 21 18 17 37 37 H 1.08994 * 117.50348 * 0.02562 * 21 18 17 38 38 H 1.08998 * 117.50443 * 107.50230 * 22 21 18 39 39 H 1.09004 * 117.49854 * 252.52018 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.7828 -0.3620 2.5528 6 6 1.0031 0.7342 2.9915 7 1 0.5350 1.3871 2.2697 8 6 0.8386 0.9719 4.3587 9 7 1.4067 0.1803 5.2341 10 14 -0.1903 2.4195 4.9378 11 1 -0.7184 3.1541 3.7602 12 1 -1.3230 1.9240 5.7603 13 1 0.6522 3.3307 5.7533 14 7 2.4190 -1.2496 3.3438 15 7 3.0330 -2.1150 2.6160 16 7 2.8116 -1.8126 1.2658 17 6 3.3327 -2.5487 0.1112 18 6 2.3974 -3.7150 -0.2144 19 6 2.3705 -4.1495 -1.6811 20 8 2.4336 -2.9951 -2.5211 21 6 2.2288 -4.8030 0.8480 22 6 1.0913 -3.8162 0.5773 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8898 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 1.2929 0.3455 6.1830 31 1 4.3258 -2.9332 0.3436 32 1 3.3935 -1.8808 -0.7481 33 1 3.2254 -4.7942 -1.8849 34 1 1.4483 -4.6947 -1.8816 35 1 2.4203 -3.1957 -3.4670 36 1 2.0985 -5.8284 0.5019 37 1 2.7837 -4.6878 1.7790 38 1 0.2127 -4.1923 0.0532 39 1 0.8984 -3.0517 1.3299 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545202.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:51 Heat of formation + Delta-G solvation = 35.594369 kcal Electronic energy + Delta-G solvation = -21264.807520 eV Core-core repulsion = 18209.251558 eV Total energy + Delta-G solvation = -3055.555962 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.04516 -39.47021 -36.78103 -36.38018 -35.27927 -33.56550 -30.43434 -29.00245 -27.81608 -27.51434 -26.54714 -23.47433 -23.29579 -22.33334 -20.67248 -19.79851 -18.87973 -18.23218 -17.27874 -16.79186 -16.68120 -15.56677 -15.48138 -15.26204 -15.05802 -14.53907 -14.29727 -13.97983 -13.83591 -13.69656 -13.17872 -12.94689 -12.85109 -12.77287 -12.49309 -12.34745 -12.26637 -11.93422 -11.88260 -11.58855 -11.41502 -11.37735 -11.18207 -11.07776 -10.58674 -10.54247 -10.15388 -9.24173 -8.23797 -6.08809 1.08909 1.44126 1.44386 1.59071 2.01173 2.36289 2.41046 2.66133 3.30060 3.61401 3.69674 3.83233 3.85924 4.04512 4.17729 4.19062 4.36430 4.50439 4.53773 4.62735 4.68953 4.73951 4.85819 4.91292 4.95364 4.97490 5.04868 5.05960 5.17403 5.22036 5.26274 5.34779 5.57003 5.58295 5.60733 5.85907 6.48665 6.53902 6.99329 7.02868 7.18174 8.38844 8.76275 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025353 B = 0.006707 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.129861 B = 4173.503076 C = 4743.860774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.009 3.991 3 C -0.138 4.138 4 C -0.062 4.062 5 C 0.112 3.888 6 C -0.469 4.469 7 H 0.099 0.901 8 C 0.017 3.983 9 N -0.832 5.832 10 Si 0.976 3.024 11 H -0.247 1.247 12 H -0.277 1.277 13 H -0.277 1.277 14 N -0.286 5.286 15 N -0.175 5.175 16 N -0.354 5.354 17 C 0.161 3.839 18 C -0.136 4.136 19 C 0.129 3.871 20 O -0.586 6.586 21 C -0.154 4.154 22 C -0.175 4.175 23 H 0.051 0.949 24 H 0.080 0.920 25 H 0.037 0.963 26 H 0.079 0.921 27 H 0.038 0.962 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.268 0.732 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.401 0.599 36 H 0.128 0.872 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -5.284 -17.524 18.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.011 4.011 3 C -0.196 4.196 4 C -0.198 4.198 5 C -0.021 4.021 6 C -0.506 4.506 7 H 0.117 0.883 8 C -0.195 4.195 9 N -0.462 5.462 10 Si 0.798 3.202 11 H -0.170 1.170 12 H -0.203 1.203 13 H -0.202 1.202 14 N -0.155 5.155 15 N -0.150 5.150 16 N -0.147 5.147 17 C 0.039 3.961 18 C -0.137 4.137 19 C 0.051 3.949 20 O -0.395 6.395 21 C -0.190 4.190 22 C -0.212 4.212 23 H 0.070 0.930 24 H 0.098 0.902 25 H 0.056 0.944 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.130 0.870 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.252 0.748 36 H 0.146 0.854 37 H 0.093 0.907 38 H 0.128 0.872 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.013 -6.074 -15.718 16.851 hybrid contribution -0.649 0.720 -0.055 0.970 sum -0.635 -5.354 -15.774 16.670 Atomic orbital electron populations 1.21737 0.94029 1.00965 1.02351 1.19290 0.95946 0.94922 0.90988 1.21802 0.99923 0.95286 1.02598 1.22178 1.05518 0.94591 0.97485 1.19442 0.99029 0.96619 0.87050 1.19009 1.29205 1.09998 0.92356 0.88347 1.26731 0.96314 0.99434 0.97035 1.70210 1.37585 1.36210 1.02146 0.85240 0.77918 0.77993 0.79009 1.16962 1.20272 1.20235 1.75025 1.10694 1.03916 1.25818 1.81355 1.26138 1.23375 0.84097 1.49845 1.36869 1.20830 1.07165 1.21168 0.96509 0.93109 0.85266 1.21906 0.99112 0.98453 0.94235 1.21492 1.01584 0.86983 0.84811 1.86429 1.97548 1.33293 1.22237 1.23032 1.01409 0.95800 0.98801 1.22993 0.92911 1.02485 1.02857 0.92966 0.90157 0.94416 0.90261 0.94275 0.89949 0.92837 0.92224 0.89280 0.87024 0.90634 0.91572 0.74818 0.85394 0.90705 0.87152 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 9.04 71.98 0.65 -3.93 16 2 C 0.01 0.34 3.03 -11.54 -0.03 0.31 16 3 C -0.14 -4.73 9.04 71.98 0.65 -4.07 16 4 C -0.06 -2.91 5.06 42.25 0.21 -2.69 16 5 C 0.11 6.36 6.60 39.67 0.26 6.62 16 6 C -0.47 -26.10 7.69 23.44 0.18 -25.92 16 7 H 0.10 5.00 4.66 -2.91 -0.01 4.99 16 8 C 0.02 0.97 5.49 85.18 0.47 1.44 16 9 N -0.83 -50.53 11.92 21.80 0.26 -50.27 16 10 Si 0.98 41.94 29.56 68.60 2.03 43.96 16 11 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 12 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 13 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 14 N -0.29 -17.66 10.56 -52.51 -0.55 -18.21 16 15 N -0.18 -9.59 13.49 37.02 0.50 -9.09 16 16 N -0.35 -15.95 2.21 -331.63 -0.73 -16.68 16 17 C 0.16 5.41 6.33 86.38 0.55 5.96 16 18 C -0.14 -3.76 2.55 -52.16 -0.13 -3.89 16 19 C 0.13 2.30 7.13 71.98 0.51 2.81 16 20 O -0.59 -10.46 12.35 -148.98 -1.84 -12.30 16 21 C -0.15 -4.44 9.92 30.59 0.30 -4.13 16 22 C -0.18 -5.82 9.48 30.62 0.29 -5.53 16 23 H 0.05 2.04 5.72 -2.39 -0.01 2.03 16 24 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.08 2.62 6.77 -2.39 -0.02 2.61 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 29 H 0.05 2.09 5.76 -2.39 -0.01 2.07 16 30 H 0.27 15.09 8.30 -92.71 -0.77 14.32 16 31 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.11 3.45 5.74 -2.39 -0.01 3.44 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 0.98 7.94 -2.39 -0.02 0.96 16 35 H 0.40 2.89 9.12 -74.06 -0.68 2.21 16 36 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.07 2.68 8.00 -2.39 -0.02 2.67 16 38 H 0.11 3.07 8.08 -2.39 -0.02 3.05 16 39 H 0.05 2.41 6.28 -2.38 -0.01 2.39 16 Total: -1.00 -76.49 316.12 3.97 -72.52 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.40 Total: 23.10 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 3.91 Total: -33.03 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -0.53 Total: -94.26 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -1.84 Total: -12.30 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -76.49 3.97 -72.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545202.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.117 kcal (2) G-P(sol) polarization free energy of solvation -76.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds