Wall clock time and date at job start Mon Mar 30 2020 04:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47001 * 2 1 4 4 C 1.50704 * 109.46683 * 119.99348 * 2 1 3 5 5 C 1.39012 * 126.77192 * 300.00082 * 4 2 1 6 6 C 1.41488 * 126.02296 * 0.02562 * 5 4 2 7 7 H 1.08001 * 120.00286 * 0.02562 * 6 5 4 8 8 C 1.39746 * 120.00190 * 179.97438 * 6 5 4 9 9 N 1.30988 * 119.99703 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00193 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.46884 * 0.02562 * 10 8 6 12 12 H 1.48493 * 109.47286 * 120.00259 * 10 8 6 13 13 H 1.48500 * 109.47307 * 240.00465 * 10 8 6 14 14 N 1.34844 * 107.95803 * 180.02562 * 5 4 2 15 15 N 1.28678 * 109.63229 * 359.70963 * 14 5 4 16 16 N 1.35019 * 126.77178 * 120.00584 * 4 2 1 17 17 C 1.46506 * 126.48955 * 359.97438 * 16 4 2 18 18 C 1.53002 * 109.47035 * 90.00586 * 17 16 4 19 19 H 1.09005 * 109.46847 * 304.99833 * 18 17 16 20 20 O 1.42903 * 109.47256 * 64.99491 * 18 17 16 21 21 C 1.52999 * 109.46954 * 184.99888 * 18 17 16 22 22 C 1.52996 * 117.49513 * 248.61907 * 21 18 17 23 23 C 1.52999 * 60.00393 * 252.51227 * 22 21 18 24 24 H 1.08994 * 109.47814 * 300.00348 * 1 2 3 25 25 H 1.09002 * 109.46646 * 60.00868 * 1 2 3 26 26 H 1.09005 * 109.47155 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47361 * 239.99368 * 2 1 3 28 28 H 1.09004 * 109.46987 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46712 * 299.99092 * 3 2 1 30 30 H 1.08994 * 109.47579 * 59.99502 * 3 2 1 31 31 H 0.96995 * 119.99582 * 179.97438 * 9 8 6 32 32 H 1.09004 * 109.47073 * 210.00268 * 17 16 4 33 33 H 1.09000 * 109.47212 * 330.00350 * 17 16 4 34 34 H 0.96702 * 113.99511 * 60.00086 * 20 18 17 35 35 H 1.08996 * 115.55213 * 34.32811 * 21 18 17 36 36 H 1.08993 * 117.50450 * 0.02562 * 22 21 18 37 37 H 1.09001 * 117.49828 * 145.02332 * 22 21 18 38 38 H 1.08999 * 117.50378 * 252.51490 * 23 22 21 39 39 H 1.09003 * 117.50217 * 107.48472 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 6 1.7846 -0.3601 2.5529 6 6 1.0075 0.7380 2.9913 7 1 0.5430 1.3934 2.2694 8 6 0.8401 0.9740 4.3585 9 7 1.4030 0.1788 5.2341 10 14 -0.1864 2.4233 4.9374 11 1 -0.7095 3.1612 3.7595 12 1 -1.3226 1.9296 5.7561 13 1 0.6563 3.3311 5.7565 14 7 2.4154 -1.2513 3.3442 15 7 3.0234 -2.1212 2.6165 16 7 2.8115 -1.8123 1.2663 17 6 3.3320 -2.5491 0.1119 18 6 4.6910 -1.9728 -0.2904 19 1 4.5936 -0.9015 -0.4665 20 8 5.6340 -2.1992 0.7591 21 6 5.1769 -2.6577 -1.5693 22 6 6.3917 -3.5812 -1.4582 23 6 6.5276 -2.2169 -2.1373 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.2870 0.3429 6.1830 32 1 3.4465 -3.6010 0.3738 33 1 2.6365 -2.4560 -0.7222 34 1 5.7711 -3.1329 0.9699 35 1 4.3980 -2.9336 -2.2800 36 1 6.8444 -3.7012 -0.4740 37 1 6.4120 -4.4650 -2.0958 38 1 6.6372 -2.2031 -3.2217 39 1 7.0698 -1.4389 -1.5998 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:02 Heat of formation + Delta-G solvation = 52.856705 kcal Electronic energy + Delta-G solvation = -20795.247617 eV Core-core repulsion = 17740.440206 eV Total energy + Delta-G solvation = -3054.807411 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.09094 -38.69769 -35.10859 -34.82353 -33.62776 -32.36220 -28.67846 -28.54478 -26.42958 -25.27156 -23.82911 -22.52781 -21.61949 -20.52880 -20.24198 -18.51335 -17.32069 -16.62985 -16.06434 -15.24618 -14.93800 -14.75453 -14.27795 -13.65526 -13.42595 -13.40124 -12.71408 -12.61255 -12.21520 -11.99106 -11.62083 -11.46261 -11.40850 -11.27127 -11.10775 -11.02977 -10.72537 -10.61999 -10.50361 -10.25956 -10.15685 -10.07930 -9.85484 -9.54163 -9.18291 -8.71379 -8.29341 -7.28315 -6.29533 -4.07678 2.88988 3.19335 3.24529 3.27544 3.55880 3.67285 4.18439 4.40333 4.43827 4.63107 4.77312 4.83294 5.12784 5.18348 5.32373 5.50183 5.55365 5.58351 5.58876 5.65198 5.75109 5.95816 5.98269 6.01950 6.05177 6.20661 6.24804 6.46521 6.56766 6.60506 6.83293 7.00297 7.19503 7.23204 7.47995 7.64281 7.79222 8.23260 8.51011 8.92194 9.17005 10.31752 10.67491 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.028086 B = 0.005574 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.686436 B = 5022.157945 C = 5533.569091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.013 3.987 3 C -0.143 4.143 4 C -0.110 4.110 5 C 0.158 3.842 6 C -0.449 4.449 7 H 0.086 0.914 8 C 0.072 3.928 9 N -0.777 5.777 10 Si 0.901 3.099 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.278 1.278 14 N -0.230 5.230 15 N -0.125 5.125 16 N -0.372 5.372 17 C 0.111 3.889 18 C 0.125 3.875 19 H 0.104 0.896 20 O -0.543 6.543 21 C -0.190 4.190 22 C -0.177 4.177 23 C -0.168 4.168 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.270 0.730 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.371 0.629 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.918 -3.309 -13.964 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.008 4.008 3 C -0.201 4.201 4 C -0.241 4.241 5 C 0.028 3.972 6 C -0.485 4.485 7 H 0.104 0.896 8 C -0.146 4.146 9 N -0.404 5.404 10 Si 0.726 3.274 11 H -0.188 1.188 12 H -0.204 1.204 13 H -0.203 1.203 14 N -0.102 5.102 15 N -0.101 5.101 16 N -0.167 5.167 17 C -0.014 4.014 18 C 0.064 3.936 19 H 0.122 0.878 20 O -0.349 6.349 21 C -0.210 4.210 22 C -0.214 4.214 23 C -0.205 4.205 24 H 0.096 0.904 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.219 0.781 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.672 -3.709 -12.702 14.032 hybrid contribution -0.942 0.587 -0.615 1.269 sum 3.730 -3.122 -13.316 14.177 Atomic orbital electron populations 1.21856 0.95118 1.01231 1.01947 1.19028 0.95107 0.94663 0.92005 1.21854 1.00315 0.96039 1.01922 1.21376 1.09179 0.96474 0.97113 1.18892 0.97374 0.95520 0.85425 1.18635 1.28953 1.09313 0.91639 0.89631 1.25787 0.95172 0.96646 0.97003 1.70035 1.34790 1.33512 1.02036 0.86387 0.79934 0.81748 0.79301 1.18758 1.20351 1.20329 1.75083 1.08777 1.02438 1.23926 1.81491 1.23526 1.22584 0.82475 1.49294 1.38772 1.21970 1.06680 1.22005 0.95416 0.96522 0.87455 1.21826 0.87295 1.00198 0.84323 0.87797 1.86688 1.62489 1.30617 1.55059 1.23096 0.92436 1.04786 1.00641 1.22952 1.01607 0.93994 1.02869 1.22889 0.99349 0.98389 0.99911 0.90405 0.93849 0.93719 0.93253 0.93691 0.93852 0.90418 0.91975 0.89604 0.89573 0.78121 0.87143 0.88125 0.88875 0.88978 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.04 37.15 0.34 -2.15 16 2 C 0.01 0.24 3.03 -91.77 -0.28 -0.04 16 3 C -0.14 -2.52 9.04 37.16 0.34 -2.18 16 4 C -0.11 -2.54 5.80 -80.90 -0.47 -3.01 16 5 C 0.16 4.33 6.60 -85.02 -0.56 3.77 16 6 C -0.45 -12.06 7.69 -37.78 -0.29 -12.35 16 7 H 0.09 2.12 4.66 -52.49 -0.24 1.87 16 8 C 0.07 1.94 5.49 -17.35 -0.10 1.84 16 9 N -0.78 -22.33 11.92 55.54 0.66 -21.67 16 10 Si 0.90 19.71 29.56 -169.99 -5.02 14.69 16 11 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 12 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 N -0.23 -6.79 10.56 32.05 0.34 -6.45 16 15 N -0.13 -3.30 13.74 60.35 0.83 -2.47 16 16 N -0.37 -8.16 3.58 -56.17 -0.20 -8.36 16 17 C 0.11 1.74 5.79 -4.04 -0.02 1.71 16 18 C 0.12 1.77 3.57 -26.73 -0.10 1.68 16 19 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 20 O -0.54 -8.78 12.44 -35.23 -0.44 -9.22 16 21 C -0.19 -2.00 5.71 -90.62 -0.52 -2.52 16 22 C -0.18 -1.66 9.73 -26.73 -0.26 -1.92 16 23 C -0.17 -1.67 10.19 -26.73 -0.27 -1.95 16 24 H 0.08 1.51 5.74 -51.93 -0.30 1.21 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.79 6.88 -51.93 -0.36 0.43 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.53 5.74 -51.93 -0.30 1.23 16 31 H 0.27 7.13 8.30 -40.82 -0.34 6.79 16 32 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.09 1.16 7.16 -51.93 -0.37 0.79 16 34 H 0.37 4.83 7.57 45.56 0.34 5.18 16 35 H 0.11 1.01 8.11 -51.93 -0.42 0.59 16 36 H 0.10 0.96 6.38 -51.93 -0.33 0.63 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 318.61 15.07 4.80 4.80 Total: -1.00 -32.85 318.61 -6.14 -39.00 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -4.92 Total: 6.80 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -2.19 Total: -17.12 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 1.63 Total: -38.95 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.44 Total: -9.22 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.85 -6.14 -39.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.852 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds