Wall clock time and date at job start Mon Mar 30 2020 04:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47136 * 2 1 4 4 C 1.50698 * 109.47095 * 119.99546 * 2 1 3 5 5 C 1.39011 * 126.77534 * 299.98067 * 4 2 1 6 6 C 1.41495 * 126.01954 * 359.97438 * 5 4 2 7 7 H 1.07999 * 120.00006 * 0.02562 * 6 5 4 8 8 C 1.39745 * 119.99835 * 180.02562 * 6 5 4 9 9 N 1.30981 * 119.99595 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99677 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47412 * 59.99736 * 10 8 6 12 12 H 1.48503 * 109.46851 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46970 * 299.99702 * 10 8 6 14 14 N 1.34847 * 107.95904 * 180.25825 * 5 4 2 15 15 N 1.28670 * 109.63076 * 359.58879 * 14 5 4 16 16 N 1.35023 * 126.76716 * 119.99876 * 4 2 1 17 17 C 1.46503 * 126.49556 * 0.02562 * 16 4 2 18 18 C 1.52998 * 109.46931 * 89.99920 * 17 16 4 19 19 H 1.08999 * 109.47201 * 55.00065 * 18 17 16 20 20 O 1.42893 * 109.46956 * 294.99833 * 18 17 16 21 21 C 1.52999 * 109.46779 * 175.00233 * 18 17 16 22 22 C 1.53002 * 117.49517 * 248.61937 * 21 18 17 23 23 C 1.52995 * 117.49742 * 179.97438 * 21 18 17 24 24 H 1.09002 * 109.47283 * 300.00413 * 1 2 3 25 25 H 1.09007 * 109.46746 * 59.99687 * 1 2 3 26 26 H 1.08996 * 109.47164 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47126 * 239.99868 * 2 1 3 28 28 H 1.08999 * 109.46923 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46932 * 299.99763 * 3 2 1 30 30 H 1.08994 * 109.47220 * 59.99926 * 3 2 1 31 31 H 0.97005 * 119.99540 * 180.02562 * 9 8 6 32 32 H 1.09000 * 109.46787 * 209.99928 * 17 16 4 33 33 H 1.09004 * 109.46622 * 329.99955 * 17 16 4 34 34 H 0.96703 * 114.00680 * 299.99879 * 20 18 17 35 35 H 1.09004 * 115.55270 * 34.32848 * 21 18 17 36 36 H 1.08991 * 117.50394 * 0.02562 * 22 21 18 37 37 H 1.09003 * 117.49436 * 145.02141 * 22 21 18 38 38 H 1.09005 * 117.49836 * 214.97650 * 23 21 18 39 39 H 1.09000 * 117.50052 * 359.97293 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.7852 -0.3600 2.5529 6 6 1.0093 0.7390 2.9914 7 1 0.5455 1.3949 2.2695 8 6 0.8430 0.9756 4.3586 9 7 1.4051 0.1798 5.2340 10 14 -0.1819 2.4261 4.9375 11 1 -1.5691 2.2876 4.4261 12 1 -0.2018 2.4569 6.4221 13 1 0.4111 3.6873 4.4246 14 7 2.4202 -1.2483 3.3440 15 7 3.0283 -2.1180 2.6162 16 7 2.8116 -1.8124 1.2660 17 6 3.3327 -2.5486 0.1116 18 6 4.6919 -1.9721 -0.2897 19 1 5.3602 -1.9842 0.5713 20 8 4.5238 -0.6275 -0.7433 21 6 5.2929 -2.8182 -1.4139 22 6 6.5335 -3.6512 -1.0850 23 6 6.6604 -2.4007 -1.9583 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.2893 0.3438 6.1830 32 1 3.4471 -3.6006 0.3731 33 1 2.6376 -2.4551 -0.7228 34 1 3.9397 -0.5408 -1.5092 35 1 4.5770 -3.2382 -2.1204 36 1 6.9212 -3.5968 -0.0679 37 1 6.6338 -4.6196 -1.5752 38 1 6.8443 -2.5469 -3.0228 39 1 7.1317 -1.5231 -1.5160 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545484.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:04 Heat of formation + Delta-G solvation = 51.919657 kcal Electronic energy + Delta-G solvation = -20895.799255 eV Core-core repulsion = 17840.951210 eV Total energy + Delta-G solvation = -3054.848045 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.09924 -38.46547 -35.56762 -34.71928 -33.57793 -32.33740 -28.57644 -28.52807 -26.36927 -25.16186 -23.77878 -22.46286 -21.63249 -20.90837 -20.17027 -18.49237 -17.30502 -16.46287 -15.99334 -15.40727 -14.79189 -14.54538 -14.36921 -13.67844 -13.48352 -13.38934 -12.77574 -12.65083 -12.20560 -11.94648 -11.65574 -11.41855 -11.39501 -11.14230 -11.07071 -11.00615 -10.65974 -10.64329 -10.44135 -10.36200 -10.19152 -10.06206 -9.82746 -9.55381 -9.15331 -8.70867 -8.29935 -7.27481 -6.27363 -4.05436 2.90324 3.22040 3.24979 3.26281 3.51670 3.68198 4.20089 4.40484 4.51320 4.54915 4.76440 4.93991 5.02173 5.16745 5.32478 5.51902 5.57595 5.60424 5.63583 5.69651 5.74448 5.86878 6.00719 6.01436 6.14415 6.23040 6.28299 6.53467 6.59582 6.68127 6.85686 7.07921 7.20693 7.24661 7.49668 7.66181 7.76649 8.23082 8.51969 8.93829 9.18880 10.31504 10.69784 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.028404 B = 0.005651 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.539253 B = 4953.869593 C = 5426.851430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.019 3.981 3 C -0.144 4.144 4 C -0.088 4.088 5 C 0.154 3.846 6 C -0.450 4.450 7 H 0.085 0.915 8 C 0.073 3.927 9 N -0.780 5.780 10 Si 0.901 3.099 11 H -0.269 1.269 12 H -0.282 1.282 13 H -0.269 1.269 14 N -0.228 5.228 15 N -0.144 5.144 16 N -0.373 5.373 17 C 0.111 3.889 18 C 0.125 3.875 19 H 0.103 0.897 20 O -0.541 6.541 21 C -0.192 4.192 22 C -0.173 4.173 23 C -0.164 4.164 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.270 0.730 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.368 0.632 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.844 -2.908 -14.355 15.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.002 4.002 3 C -0.202 4.202 4 C -0.220 4.220 5 C 0.023 3.977 6 C -0.486 4.486 7 H 0.103 0.897 8 C -0.146 4.146 9 N -0.406 5.406 10 Si 0.726 3.274 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.194 1.194 14 N -0.100 5.100 15 N -0.119 5.119 16 N -0.167 5.167 17 C -0.014 4.014 18 C 0.064 3.936 19 H 0.121 0.879 20 O -0.346 6.346 21 C -0.211 4.211 22 C -0.210 4.210 23 C -0.201 4.201 24 H 0.096 0.904 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.214 0.786 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.984 -3.844 -12.571 14.059 hybrid contribution -1.256 0.951 -0.981 1.856 sum 3.728 -2.894 -13.553 14.351 Atomic orbital electron populations 1.21894 0.95422 1.01139 1.01967 1.18986 0.94589 0.94848 0.91792 1.21857 1.01241 0.95588 1.01507 1.21362 1.07935 0.95704 0.97033 1.18889 0.97679 0.95631 0.85464 1.18544 1.29212 1.09243 0.91609 0.89743 1.25769 0.95175 0.96634 0.96985 1.70013 1.34931 1.33615 1.02085 0.86508 0.80754 0.82240 0.77851 1.19399 1.20738 1.19371 1.75054 1.08655 1.02360 1.23882 1.81496 1.24764 1.23130 0.82497 1.49341 1.38757 1.21988 1.06615 1.22008 0.95148 0.96886 0.87367 1.21912 0.95441 0.81662 0.94579 0.87911 1.86720 1.70665 1.25688 1.51483 1.23011 0.91929 1.04064 1.02116 1.22967 1.01010 0.95575 1.01433 1.22841 0.98922 0.99002 0.99374 0.90420 0.93849 0.93838 0.93562 0.92587 0.94165 0.90765 0.91915 0.89030 0.90127 0.78571 0.87591 0.88448 0.88701 0.88899 0.88331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.04 37.16 0.34 -2.19 16 2 C 0.02 0.34 2.70 -91.77 -0.25 0.09 16 3 C -0.14 -2.52 9.04 37.16 0.34 -2.19 16 4 C -0.09 -2.02 5.62 -80.90 -0.45 -2.47 16 5 C 0.15 4.23 6.60 -85.01 -0.56 3.67 16 6 C -0.45 -12.11 7.69 -37.78 -0.29 -12.40 16 7 H 0.08 2.09 4.66 -52.49 -0.24 1.85 16 8 C 0.07 1.95 5.49 -17.35 -0.10 1.86 16 9 N -0.78 -22.46 11.92 55.54 0.66 -21.80 16 10 Si 0.90 19.81 29.56 -169.99 -5.02 14.78 16 11 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 13 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 14 N -0.23 -6.74 10.56 32.05 0.34 -6.40 16 15 N -0.14 -3.81 13.74 60.35 0.83 -2.98 16 16 N -0.37 -8.17 3.59 -56.17 -0.20 -8.37 16 17 C 0.11 1.73 5.79 -4.04 -0.02 1.71 16 18 C 0.12 1.76 3.41 -26.73 -0.09 1.67 16 19 H 0.10 1.73 7.90 -51.93 -0.41 1.32 16 20 O -0.54 -8.07 12.09 -35.23 -0.43 -8.50 16 21 C -0.19 -2.01 5.36 -90.62 -0.49 -2.50 16 22 C -0.17 -1.69 10.18 -26.71 -0.27 -1.97 16 23 C -0.16 -1.61 10.16 -26.71 -0.27 -1.88 16 24 H 0.08 1.51 5.75 -51.93 -0.30 1.21 16 25 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.70 5.81 -51.93 -0.30 0.40 16 28 H 0.06 1.02 7.65 -51.93 -0.40 0.62 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 1.47 5.74 -51.93 -0.30 1.18 16 31 H 0.27 7.21 8.30 -40.82 -0.34 6.87 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.08 1.07 7.16 -51.93 -0.37 0.70 16 34 H 0.37 4.24 8.11 45.56 0.37 4.61 16 35 H 0.11 0.95 8.11 -51.93 -0.42 0.53 16 36 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 318.06 15.07 4.79 4.79 Total: -1.00 -32.72 318.06 -6.03 -38.76 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -4.89 Total: 6.33 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -2.12 Total: -16.61 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 1.63 Total: -39.55 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.43 Total: -8.50 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.72 -6.03 -38.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545484.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.677 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds