Wall clock time and date at job start Mon Mar 30 2020 05:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47227 * 2 1 4 4 C 1.53001 * 109.47227 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47221 * 180.02562 * 4 3 2 6 6 N 1.40124 * 126.49363 * 270.15265 * 5 4 3 7 7 N 1.28672 * 108.93549 * 180.25856 * 6 5 4 8 8 C 1.34837 * 109.63440 * 359.76495 * 7 6 5 9 9 C 1.41490 * 126.02180 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00219 * 186.85991 * 9 8 7 11 11 C 1.39741 * 119.99967 * 6.86427 * 9 8 7 12 12 N 1.30984 * 119.99697 * 8.75180 * 11 9 8 13 13 Si 1.86799 * 119.99937 * 188.75501 * 11 9 8 14 14 H 1.48504 * 109.46914 * 94.92565 * 13 11 9 15 15 H 1.48500 * 109.46810 * 214.92072 * 13 11 9 16 16 H 1.48490 * 109.47362 * 334.92220 * 13 11 9 17 17 C 1.35017 * 126.49308 * 90.00352 * 5 4 3 18 18 C 1.50703 * 126.77210 * 0.02562 * 17 5 4 19 19 H 1.09007 * 110.74979 * 357.69236 * 18 17 5 20 20 C 1.55565 * 111.01219 * 234.12334 * 18 17 5 21 21 C 1.54947 * 100.82167 * 207.60603 * 20 18 17 22 22 O 1.43639 * 105.22761 * 36.43930 * 21 20 18 23 23 C 1.43241 * 109.97074 * 335.52182 * 22 21 20 24 24 H 1.09004 * 109.46741 * 299.99868 * 1 2 3 25 25 H 1.09001 * 109.47131 * 59.99684 * 1 2 3 26 26 H 1.09000 * 109.47241 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47246 * 239.99993 * 2 1 3 28 28 H 1.09001 * 109.47131 * 120.00315 * 2 1 3 29 29 H 1.08994 * 109.47119 * 60.00331 * 3 2 1 30 30 H 1.09001 * 109.47323 * 300.00198 * 3 2 1 31 31 H 1.09005 * 109.47246 * 59.99993 * 4 3 2 32 32 H 1.09001 * 109.47131 * 300.00315 * 4 3 2 33 33 H 0.97001 * 120.00079 * 179.97438 * 12 11 9 34 34 H 1.08998 * 111.22831 * 89.70402 * 20 18 17 35 35 H 1.09005 * 111.12972 * 325.46168 * 20 18 17 36 36 H 1.09005 * 110.30791 * 277.46992 * 21 20 18 37 37 H 1.09001 * 110.30848 * 155.40356 * 21 20 18 38 38 H 1.09001 * 109.83120 * 121.22322 * 23 22 21 39 39 H 1.08997 * 109.83165 * 242.20291 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 7 4.3329 3.6111 -1.1262 7 7 4.7482 4.7652 -0.7375 8 6 4.7671 4.8098 0.6100 9 6 5.1646 5.9138 1.4006 10 1 5.2479 5.8086 2.4722 11 6 5.4495 7.1405 0.7948 12 7 5.1859 7.3203 -0.4756 13 14 6.2061 8.5236 1.7967 14 1 7.6822 8.5016 1.6352 15 1 5.6755 9.8266 1.3214 16 1 5.8622 8.3422 3.2298 17 6 4.3266 3.5801 1.0857 18 6 4.1831 3.1699 2.5288 19 1 3.7826 2.1589 2.6049 20 6 3.2921 4.1782 3.3094 21 6 3.8567 4.0160 4.7432 22 8 5.2688 3.8159 4.5722 23 6 5.5331 3.2832 3.2690 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9330 0.9288 -0.8909 32 1 3.9338 0.9285 0.8891 33 1 5.3833 8.1719 -0.8961 34 1 2.2413 3.8919 3.2662 35 1 3.4358 5.1948 2.9432 36 1 3.4082 3.1504 5.2307 37 1 3.6704 4.9172 5.3273 38 1 6.1986 3.9526 2.7239 39 1 5.9898 2.2976 3.3581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:01 Heat of formation + Delta-G solvation = 22.914878 kcal Electronic energy + Delta-G solvation = -20833.107721 eV Core-core repulsion = 17777.001935 eV Total energy + Delta-G solvation = -3056.105786 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24377 -38.50431 -35.91037 -33.50612 -32.89848 -31.81448 -29.40381 -28.47974 -27.87238 -25.15599 -23.74481 -22.12288 -21.52165 -21.17307 -20.24941 -18.83195 -17.26385 -16.14517 -15.60183 -15.34515 -14.88720 -14.76921 -14.46400 -14.19472 -13.47993 -13.31563 -12.85917 -12.79517 -12.53672 -12.32271 -11.84413 -11.41171 -11.39070 -11.21008 -11.13433 -11.07774 -10.96999 -10.91410 -10.75111 -10.60556 -10.26260 -10.02489 -9.72594 -9.27029 -9.02702 -8.85586 -8.44391 -7.40464 -6.41820 -4.18208 2.75170 3.16263 3.22801 3.26438 3.57953 4.14027 4.26005 4.40661 4.88654 4.90850 5.06697 5.14899 5.20782 5.31784 5.43602 5.55693 5.58361 5.62871 5.66473 5.73379 5.74263 5.77881 5.85808 5.95905 6.09452 6.14192 6.19737 6.21227 6.34133 6.38908 6.62781 6.75387 7.00747 7.11121 7.36066 7.46767 7.52101 8.12495 8.43548 8.79895 9.06580 10.17008 10.56052 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.018208 B = 0.006936 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.409401 B = 4035.667469 C = 5073.772030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.134 4.134 4 C 0.138 3.862 5 N -0.376 5.376 6 N -0.127 5.127 7 N -0.233 5.233 8 C 0.162 3.838 9 C -0.452 4.452 10 H 0.089 0.911 11 C 0.076 3.924 12 N -0.774 5.774 13 Si 0.901 3.099 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.262 1.262 17 C -0.114 4.114 18 C -0.010 4.010 19 H 0.067 0.933 20 C -0.152 4.152 21 C 0.053 3.947 22 O -0.387 6.387 23 C 0.056 3.944 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.272 0.728 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 -10.237 5.959 13.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.173 4.173 4 C 0.014 3.986 5 N -0.172 5.172 6 N -0.103 5.103 7 N -0.105 5.105 8 C 0.033 3.967 9 C -0.487 4.487 10 H 0.107 0.893 11 C -0.143 4.143 12 N -0.400 5.400 13 Si 0.727 3.273 14 H -0.198 1.198 15 H -0.206 1.206 16 H -0.186 1.186 17 C -0.245 4.245 18 C -0.031 4.031 19 H 0.086 0.914 20 C -0.190 4.190 21 C -0.024 4.024 22 O -0.306 6.306 23 C -0.021 4.021 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.126 0.874 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.608 -9.987 4.329 12.245 hybrid contribution 0.045 0.372 1.271 1.325 sum -5.562 -9.615 5.600 12.439 Atomic orbital electron populations 1.21752 0.95749 1.01330 1.02012 1.21456 0.96044 0.96350 1.01997 1.22017 0.94995 0.96959 1.03343 1.21382 0.94014 0.80427 1.02806 1.49460 1.50524 1.11165 1.06037 1.81483 1.21735 0.99157 1.07883 1.75061 1.14790 1.08357 1.12340 1.18919 0.97971 0.91788 0.88059 1.18677 1.43384 0.92494 0.94164 0.89307 1.25779 0.94211 0.99446 0.94885 1.69999 1.35033 1.24136 1.10808 0.86405 0.79871 0.80177 0.80890 1.19769 1.20603 1.18612 1.20943 1.19984 0.95605 0.87969 1.20521 0.95202 0.97708 0.89683 0.91444 1.23463 0.98673 1.03275 0.93619 1.23287 0.81910 0.99978 0.97187 1.88341 1.23301 1.85376 1.33588 1.23283 0.97558 0.98373 0.82852 0.92738 0.92680 0.92866 0.91829 0.91978 0.91527 0.91146 0.89880 0.90470 0.91694 0.91175 0.87413 0.93322 0.90278 0.89094 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.23 5.93 -26.73 -0.16 -1.39 16 3 C -0.13 -1.84 5.54 -26.73 -0.15 -1.98 16 4 C 0.14 2.14 6.18 -4.04 -0.02 2.12 16 5 N -0.38 -8.08 3.63 -56.17 -0.20 -8.29 16 6 N -0.13 -3.27 13.74 60.35 0.83 -2.44 16 7 N -0.23 -6.68 10.68 32.05 0.34 -6.34 16 8 C 0.16 4.33 6.33 -85.02 -0.54 3.79 16 9 C -0.45 -11.88 7.07 -37.78 -0.27 -12.15 16 10 H 0.09 2.22 5.51 -52.49 -0.29 1.93 16 11 C 0.08 2.01 5.48 -17.35 -0.10 1.91 16 12 N -0.77 -21.66 12.03 55.54 0.67 -20.99 16 13 Si 0.90 19.60 29.57 -169.99 -5.03 14.58 16 14 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 15 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 16 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 17 C -0.11 -2.56 5.94 -80.90 -0.48 -3.04 16 18 C -0.01 -0.18 3.18 -89.68 -0.28 -0.47 16 19 H 0.07 1.07 7.02 -51.92 -0.36 0.70 16 20 C -0.15 -2.61 6.27 -24.34 -0.15 -2.76 16 21 C 0.05 0.81 7.77 38.19 0.30 1.11 16 22 O -0.39 -7.10 11.36 -35.23 -0.40 -7.50 16 23 C 0.06 1.03 6.71 37.88 0.25 1.29 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.08 1.05 7.22 -51.93 -0.38 0.67 16 33 H 0.27 7.03 8.30 -40.82 -0.34 6.69 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.11 2.18 5.68 -51.93 -0.30 1.88 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.92 6.24 -51.93 -0.32 1.60 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 316.29 15.07 4.77 4.77 Total: -1.00 -31.00 316.29 -6.11 -37.11 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.85 Total: 1.74 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -1.23 Total: -12.64 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 1.64 Total: -38.06 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.40 Total: -7.50 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.00 -6.11 -37.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.027 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds