Wall clock time and date at job start Mon Mar 30 2020 05:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47336 * 2 1 4 4 H 1.09001 * 109.47362 * 305.00233 * 3 2 1 5 5 C 1.52996 * 109.47205 * 185.00038 * 3 2 1 6 6 O 1.42899 * 109.47431 * 65.00163 * 5 3 2 7 7 C 1.42897 * 114.00338 * 180.02562 * 6 5 3 8 8 N 1.46502 * 109.47097 * 65.00326 * 3 2 1 9 9 N 1.40126 * 126.49273 * 59.68172 * 8 3 2 10 10 N 1.28676 * 108.93208 * 179.81503 * 9 8 3 11 11 C 1.34846 * 109.63530 * 0.45738 * 10 9 8 12 12 C 1.41490 * 126.01779 * 179.71174 * 11 10 9 13 13 H 1.08007 * 119.99830 * 186.18699 * 12 11 10 14 14 C 1.39739 * 120.00337 * 6.18083 * 12 11 10 15 15 N 1.30986 * 119.99812 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00131 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46931 * 59.99904 * 16 14 12 18 18 H 1.48490 * 109.47051 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47127 * 300.00319 * 16 14 12 20 20 C 1.35023 * 126.49268 * 240.00325 * 8 3 2 21 21 C 1.50699 * 126.77106 * 359.97438 * 20 8 3 22 22 C 1.53000 * 117.49944 * 311.92421 * 21 20 8 23 23 C 1.52999 * 117.50028 * 243.26054 * 21 20 8 24 24 H 1.09008 * 109.47318 * 59.99425 * 1 2 3 25 25 H 1.08996 * 109.47661 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47099 * 300.00358 * 1 2 3 27 27 H 1.08997 * 109.47069 * 120.00100 * 2 1 3 28 28 H 1.09004 * 109.46838 * 240.00084 * 2 1 3 29 29 H 1.09010 * 109.47264 * 185.00352 * 5 3 2 30 30 H 1.09008 * 109.47160 * 304.99675 * 5 3 2 31 31 H 1.09008 * 109.46948 * 300.00099 * 7 6 5 32 32 H 1.09000 * 109.47362 * 59.99438 * 7 6 5 33 33 H 1.09004 * 109.47047 * 180.02562 * 7 6 5 34 34 H 0.97001 * 119.99769 * 179.97438 * 15 14 12 35 35 H 1.09002 * 115.54977 * 97.59247 * 21 20 8 36 36 H 1.08999 * 117.49915 * 359.97438 * 22 21 20 37 37 H 1.08999 * 117.50039 * 145.01748 * 22 21 20 38 38 H 1.09000 * 117.49802 * 214.98011 * 23 21 20 39 39 H 1.09000 * 117.49949 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1257 6 8 3.9386 0.9112 -1.3978 7 6 5.3498 0.8676 -1.6179 8 7 1.6525 2.0974 1.2519 9 7 2.0088 1.6974 2.5467 10 7 1.4888 2.5144 3.3940 11 6 0.7800 3.4561 2.7390 12 6 0.0615 4.5202 3.3336 13 1 -0.5559 5.1626 2.7230 14 6 0.1506 4.7400 4.7107 15 7 0.8996 3.9612 5.4511 16 14 -0.7986 6.1444 5.4957 17 1 -2.2517 5.9547 5.2559 18 1 -0.5358 6.1634 6.9571 19 1 -0.3622 7.4319 4.8980 20 6 0.8795 3.1974 1.3768 21 6 0.2493 3.9888 0.2599 22 6 1.1410 4.3771 -0.9212 23 6 0.6954 5.4417 0.0845 24 1 -0.3634 0.5140 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.9356 2.4655 -0.0365 30 1 3.9954 0.8310 0.6660 31 1 5.7580 1.8767 -1.5595 32 1 5.8171 0.2422 -0.8572 33 1 5.5509 0.4513 -2.6050 34 1 0.9617 4.1140 6.4070 35 1 -0.7935 3.7533 0.0471 36 1 2.1836 4.0606 -0.8901 37 1 0.6848 4.3975 -1.9109 38 1 -0.0538 6.1620 -0.2441 39 1 1.4450 5.8251 0.7767 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:36 Heat of formation + Delta-G solvation = 60.646372 kcal Electronic energy + Delta-G solvation = -20878.970764 eV Core-core repulsion = 17824.501138 eV Total energy + Delta-G solvation = -3054.469626 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.20609 -38.01918 -36.35810 -35.21692 -33.18239 -30.85450 -29.36275 -28.78837 -26.28179 -24.97609 -23.43285 -22.66374 -22.12431 -21.35177 -19.58752 -18.77420 -16.99050 -16.40656 -15.77973 -15.45488 -15.35853 -14.84350 -14.65824 -13.95909 -13.76661 -13.23393 -13.07968 -12.79141 -12.74247 -11.87102 -11.74621 -11.50745 -11.31881 -11.12816 -11.05838 -10.90689 -10.80042 -10.76064 -10.58115 -10.26533 -10.02035 -9.79231 -9.68328 -9.58445 -9.24745 -8.77027 -8.41979 -7.37265 -6.34346 -4.12782 2.78663 3.18279 3.22028 3.23180 3.30709 4.08570 4.16234 4.32801 4.38730 4.85087 5.10105 5.28160 5.29055 5.30336 5.36189 5.44585 5.52626 5.56733 5.57669 5.62001 5.64790 5.81157 5.92606 5.99571 6.06251 6.15171 6.22258 6.35610 6.45788 6.56395 6.59585 6.75177 6.96772 7.10235 7.18001 7.41677 7.54604 8.17420 8.48761 8.85673 9.12631 10.22454 10.62702 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.023214 B = 0.005947 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.892137 B = 4707.449520 C = 4996.734729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.171 3.829 4 H 0.102 0.898 5 C 0.057 3.943 6 O -0.390 6.390 7 C 0.034 3.966 8 N -0.365 5.365 9 N -0.129 5.129 10 N -0.228 5.228 11 C 0.160 3.840 12 C -0.445 4.445 13 H 0.081 0.919 14 C 0.073 3.927 15 N -0.778 5.778 16 Si 0.905 3.095 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.269 1.269 20 C -0.088 4.088 21 C -0.042 4.042 22 C -0.194 4.194 23 C -0.155 4.155 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.272 0.728 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.655 -2.276 -12.522 13.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C 0.066 3.934 4 H 0.120 0.880 5 C -0.021 4.021 6 O -0.308 6.308 7 C -0.063 4.063 8 N -0.162 5.162 9 N -0.105 5.105 10 N -0.100 5.100 11 C 0.031 3.969 12 C -0.481 4.481 13 H 0.100 0.900 14 C -0.146 4.146 15 N -0.405 5.405 16 Si 0.731 3.269 17 H -0.193 1.193 18 H -0.207 1.207 19 H -0.194 1.194 20 C -0.218 4.218 21 C -0.062 4.062 22 C -0.231 4.231 23 C -0.193 4.193 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.409 -3.452 -11.561 12.537 hybrid contribution -0.644 1.459 -0.079 1.597 sum 2.764 -1.992 -11.640 12.128 Atomic orbital electron populations 1.21708 0.95390 1.01185 1.02244 1.21807 0.96592 0.95003 1.02944 1.20822 0.92906 0.94756 0.84950 0.88031 1.22808 0.95538 0.98380 0.85394 1.87779 1.22774 1.84665 1.35557 1.22720 0.81600 1.00449 1.01522 1.49331 1.38834 1.21728 1.06269 1.81467 1.23801 1.22250 0.82957 1.75119 1.10140 1.02779 1.22002 1.18907 0.96846 0.95141 0.86035 1.18496 1.26156 1.11261 0.92215 0.90050 1.25780 0.94700 0.96559 0.97520 1.70004 1.30684 1.33494 1.06311 0.86438 0.80566 0.81827 0.78103 1.19342 1.20710 1.19365 1.20471 1.09528 0.96315 0.95513 1.19788 0.96983 0.95977 0.93467 1.23002 1.00041 1.05921 0.94170 1.22844 1.03485 0.91627 1.01371 0.93033 0.92988 0.92125 0.90927 0.90416 0.93031 0.91968 0.94159 0.94013 0.89670 0.91778 0.88165 0.89627 0.89297 0.89157 0.88433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.80 37.16 0.36 -1.92 16 2 C -0.13 -1.96 5.50 -26.73 -0.15 -2.11 16 3 C 0.17 2.93 2.37 -67.93 -0.16 2.77 16 4 H 0.10 1.66 5.85 -51.93 -0.30 1.35 16 5 C 0.06 0.90 5.59 37.16 0.21 1.11 16 6 O -0.39 -5.45 10.16 -35.23 -0.36 -5.81 16 7 C 0.03 0.36 11.01 101.05 1.11 1.47 16 8 N -0.36 -7.90 2.74 -49.74 -0.14 -8.03 16 9 N -0.13 -3.30 13.62 60.35 0.82 -2.48 16 10 N -0.23 -6.57 10.58 32.05 0.34 -6.23 16 11 C 0.16 4.37 6.71 -85.02 -0.57 3.80 16 12 C -0.45 -12.03 9.16 -37.78 -0.35 -12.38 16 13 H 0.08 2.06 7.74 -52.48 -0.41 1.65 16 14 C 0.07 1.94 5.49 -17.35 -0.10 1.85 16 15 N -0.78 -22.05 11.94 55.54 0.66 -21.39 16 16 Si 0.91 19.65 29.56 -169.99 -5.02 14.62 16 17 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 C -0.09 -2.01 6.55 -80.90 -0.53 -2.54 16 21 C -0.04 -0.78 5.55 -91.77 -0.51 -1.28 16 22 C -0.19 -2.99 8.64 -26.69 -0.23 -3.22 16 23 C -0.16 -2.61 10.24 -26.69 -0.27 -2.89 16 24 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.14 7.75 -51.93 -0.40 0.73 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.08 1.07 7.69 -51.93 -0.40 0.67 16 29 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 30 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 31 H 0.04 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.27 7.11 8.30 -40.82 -0.34 6.77 16 35 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 36 H 0.09 1.38 7.56 -51.93 -0.39 0.99 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 329.14 15.07 4.96 4.96 Total: -1.00 -30.72 329.14 -6.03 -36.75 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -6.11 Total: 2.95 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -1.18 Total: -15.34 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 1.69 Total: -38.13 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.36 Total: -5.81 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.72 -6.03 -36.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.397 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds