Wall clock time and date at job start Mon Mar 30 2020 04:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48500 * 109.46879 * 240.00122 * 3 2 1 5 5 H 1.48503 * 109.47151 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47196 * 120.00267 * 3 2 1 7 7 C 1.38983 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99696 * 179.97438 * 7 2 1 9 9 N 1.36905 * 120.00618 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00273 * 180.02562 * 9 7 2 11 11 O 1.21758 * 120.00368 * 359.97438 * 10 9 7 12 12 C 1.46316 * 119.99771 * 179.97438 * 10 9 7 13 13 S 1.76204 * 126.17247 * 359.68092 * 12 10 9 14 14 C 1.70917 * 90.40686 * 179.97438 * 13 12 10 15 15 Cl 1.73595 * 124.68727 * 180.02562 * 14 13 12 16 16 N 1.29530 * 110.62966 * 0.30161 * 14 13 12 17 17 C 1.31027 * 117.42607 * 359.76730 * 16 14 13 18 18 Cl 1.73598 * 123.06133 * 179.97438 * 17 16 14 19 19 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 20 20 H 0.96999 * 119.99680 * 359.97438 * 9 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0089 -1.2037 0.0005 8 1 3.0889 -1.2037 0.0001 9 7 1.3245 -2.3893 0.0005 10 6 1.9983 -3.5565 0.0016 11 8 3.2159 -3.5566 0.0021 12 6 1.2667 -4.8236 0.0021 13 16 -0.4851 -5.0130 0.0095 14 6 -0.3135 -6.7135 0.0044 15 17 -1.6345 -7.8398 0.0068 16 7 0.9384 -7.0459 0.0043 17 6 1.8201 -6.0767 0.0033 18 17 3.5336 -6.3552 0.0036 19 1 -0.4850 0.8401 -0.0004 20 1 0.3545 -2.3893 0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307745830.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:08 Heat of formation + Delta-G solvation = -1.632177 kcal Electronic energy + Delta-G solvation = -13172.313696 eV Core-core repulsion = 10355.121616 eV Total energy + Delta-G solvation = -2817.192081 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 265.942 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.60560 -38.10347 -36.89418 -36.03004 -34.34776 -31.73256 -29.95038 -26.18224 -24.95017 -21.53627 -19.66195 -18.70036 -18.23982 -16.15349 -15.64162 -15.21297 -14.85046 -14.70150 -14.04595 -13.53649 -13.04023 -12.20794 -12.02291 -11.79557 -11.54177 -11.32838 -10.97434 -10.75621 -10.57186 -10.52928 -9.90877 -9.83576 -9.34060 -8.72078 -8.47740 -8.38105 -6.90685 -4.11728 0.25008 0.80153 1.36139 1.83271 2.48198 2.69457 3.03406 3.06237 3.09747 3.83634 3.92377 4.54099 4.95252 4.98401 5.49620 5.92471 7.10063 7.38941 7.61834 8.13924 8.71432 9.02165 9.63179 10.23812 Molecular weight = 265.94amu Principal moments of inertia in cm(-1) A = 0.026441 B = 0.006221 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.708113 B = 4499.474149 C = 5548.338390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.023 3.977 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.272 4.272 8 H 0.118 0.882 9 N -0.527 5.527 10 C 0.483 3.517 11 O -0.565 6.565 12 C -0.211 4.211 13 S 0.243 5.757 14 C 0.039 3.961 15 Cl 0.021 6.979 16 N -0.449 5.449 17 C 0.135 3.865 18 Cl 0.022 6.978 19 H 0.284 0.716 20 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.702 -7.419 0.018 8.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.184 4.184 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.404 4.404 8 H 0.136 0.864 9 N -0.160 5.160 10 C 0.270 3.730 11 O -0.451 6.451 12 C -0.339 4.339 13 S 0.493 5.507 14 C -0.261 4.261 15 Cl 0.049 6.951 16 N -0.167 5.167 17 C -0.029 4.029 18 Cl 0.051 6.949 19 H 0.094 0.906 20 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -4.792 -7.315 0.026 8.745 hybrid contribution 0.557 0.207 -0.007 0.594 sum -4.235 -7.108 0.019 8.274 Atomic orbital electron populations 1.69603 1.06394 1.29888 1.44593 1.25581 0.95862 1.00746 0.96203 0.85684 0.78867 0.78830 0.79743 1.19201 1.20417 1.19194 1.20056 0.94281 0.81670 1.44344 0.86441 1.42056 1.09372 1.04938 1.59655 1.16042 0.87252 0.81070 0.88645 1.90752 1.11442 1.85152 1.57774 1.26395 0.95366 0.99745 1.12368 1.84134 1.02460 0.98263 1.65856 1.26488 0.91689 0.95061 1.12878 1.98399 1.39409 1.60487 1.96853 1.65021 0.99493 1.36564 1.15577 1.20303 0.89130 0.86079 1.07416 1.98397 1.03489 1.96419 1.96617 0.90582 0.77313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -20.99 13.05 55.50 0.72 -20.27 14 2 C 0.02 0.54 5.50 -17.46 -0.10 0.45 14 3 Si 0.94 18.70 29.55 -169.99 -5.02 13.68 14 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 14 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 14 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 14 7 C -0.27 -6.88 9.68 -15.01 -0.15 -7.03 14 8 H 0.12 3.06 7.15 -52.49 -0.38 2.69 14 9 N -0.53 -12.63 5.28 -12.27 -0.06 -12.70 14 10 C 0.48 11.43 7.72 -13.01 -0.10 11.33 14 11 O -0.57 -14.85 14.74 5.14 0.08 -14.78 14 12 C -0.21 -4.27 6.51 -36.79 -0.24 -4.51 14 13 S 0.24 3.88 22.33 -107.50 -2.40 1.48 14 14 C 0.04 0.63 8.01 51.79 0.41 1.04 14 15 Cl 0.02 0.27 29.33 -51.86 -1.52 -1.25 14 16 N -0.45 -8.22 10.51 -9.28 -0.10 -8.32 14 17 C 0.13 2.67 7.42 -18.35 -0.14 2.54 14 18 Cl 0.02 0.44 27.38 -51.86 -1.42 -0.98 14 19 H 0.28 6.41 8.31 -40.82 -0.34 6.07 14 20 H 0.39 8.88 7.07 -40.82 -0.29 8.59 14 LS Contribution 240.87 15.07 3.63 3.63 Total: -1.00 -26.88 240.87 -6.20 -33.08 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: 0.20 Total: 2.61 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -0.30 Total: 3.82 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.56 Total: -41.28 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.08 Total: -14.78 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.68 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -2.40 Total: 1.48 kcal Atomic # 17 Polarization: 0.71 SS G_CDS: -2.94 Total: -2.24 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -26.88 -6.20 -33.08 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307745830.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.443 kcal (2) G-P(sol) polarization free energy of solvation -26.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds