Wall clock time and date at job start Mon Mar 30 2020 04:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30407 * 1 3 3 Si 1.86800 * 120.00059 * 2 1 4 4 H 1.48500 * 109.47350 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47257 * 299.99750 * 3 2 1 6 6 H 1.48504 * 109.47313 * 60.00021 * 3 2 1 7 7 C 1.40727 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00592 * 179.72477 * 7 2 1 9 9 C 1.39485 * 119.99473 * 0.02562 * 7 2 1 10 10 S 1.75214 * 124.63244 * 359.41760 * 9 7 2 11 11 C 1.75846 * 92.67579 * 179.91468 * 10 9 7 12 12 C 1.40013 * 110.63884 * 0.35376 * 11 10 9 13 13 C 1.41512 * 118.90332 * 179.73613 * 12 11 10 14 14 C 1.36010 * 120.54100 * 0.02562 * 13 12 11 15 15 C 1.38964 * 120.54287 * 359.97249 * 14 13 12 16 16 C 1.37698 * 120.23753 * 0.02862 * 15 14 13 17 17 F 1.35095 * 119.86415 * 179.97438 * 16 15 14 18 18 C 1.38506 * 124.62947 * 179.72333 * 9 7 2 19 Xx 1.56993 * 123.19797 * 359.97438 * 18 9 7 20 19 O 1.41996 * 120.00415 * 0.02759 * 19 18 9 21 20 O 1.42004 * 120.00179 * 180.02562 * 19 18 9 22 21 H 0.96995 * 120.00116 * 0.02562 * 1 2 3 23 22 H 1.07997 * 119.72747 * 179.97438 * 13 12 11 24 23 H 1.07993 * 119.72861 * 179.97438 * 14 13 12 25 24 H 1.08002 * 119.88374 * 180.02562 * 15 14 13 26 25 H 0.96697 * 114.00815 * 180.02562 * 20 19 18 27 26 H 0.96697 * 114.00059 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3041 0.0000 0.0000 3 14 2.2381 1.6177 0.0000 4 1 3.6981 1.3464 0.0006 5 1 1.8794 2.3964 -1.2125 6 1 1.8794 2.3965 1.2125 7 6 2.0078 -1.2187 0.0005 8 1 3.0877 -1.2187 -0.0039 9 6 1.3104 -2.4266 0.0005 10 16 -0.4360 -2.5682 0.0146 11 6 -0.3760 -4.3256 0.0029 12 6 0.9503 -4.7741 -0.0032 13 6 1.2014 -6.1667 -0.0072 14 6 0.1712 -7.0548 -0.0057 15 6 -1.1451 -6.6093 0.0004 16 6 -1.4206 -5.2602 0.0043 17 9 -2.7030 -4.8355 0.0097 18 6 1.9038 -3.6781 -0.0044 19 8 4.3300 -2.7704 -0.0122 20 8 3.9950 -5.2069 -0.0168 21 1 -0.4850 0.8400 -0.0004 22 1 2.2194 -6.5274 -0.0123 23 1 0.3779 -8.1147 -0.0092 24 1 -1.9550 -7.3238 0.0019 25 1 5.2690 -3.0015 -0.0171 26 1 4.9615 -5.2377 -0.0205 There are 42 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 42 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396370550.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:45 Heat of formation + Delta-G solvation = 77.001307 kcal Electronic energy + Delta-G solvation = -15828.399426 eV Core-core repulsion = 12806.824368 eV Total energy + Delta-G solvation = -3021.575058 eV No. of doubly occupied orbitals = 42 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 255.028 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.49728 -38.48485 -36.60541 -33.62688 -30.46936 -29.86838 -28.94651 -28.34126 -26.43672 -22.84524 -22.19736 -19.75108 -18.73909 -17.22036 -16.73113 -15.77196 -15.41148 -15.28144 -14.83879 -14.10789 -13.62392 -13.09026 -13.02388 -12.43115 -12.34289 -12.27666 -11.67975 -11.29765 -11.15270 -11.14177 -10.74827 -10.69760 -10.23018 -10.15649 -8.82767 -8.75738 -8.33532 -7.05032 -6.91345 -6.83970 -6.42939 -5.39751 -2.42579 -0.18254 1.39056 1.64955 1.95657 2.22702 2.33388 2.36815 2.83054 2.85448 3.03082 3.68509 4.55465 4.61147 4.78361 5.06203 5.36569 5.55151 5.66653 5.84725 6.09634 6.31967 6.42257 6.64876 6.71664 6.85724 7.00221 7.29057 7.68222 7.73574 10.15251 10.34576 Molecular weight = 255.03amu Principal moments of inertia in cm(-1) A = 0.021410 B = 0.008694 C = 0.006196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.487434 B = 3219.969736 C = 4517.601936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.046 4.046 3 Si 0.971 3.029 4 H -0.220 1.220 5 H -0.245 1.245 6 H -0.245 1.245 7 C 0.074 3.926 8 H 0.202 0.798 9 C -0.169 4.169 10 S -0.053 6.053 11 C -0.144 4.144 12 C -0.140 4.140 13 C 0.010 3.990 14 C -0.152 4.152 15 C -0.102 4.102 16 C 0.078 3.922 17 F -0.145 7.145 18 C 0.136 3.864 19 O -0.779 6.779 20 O -0.734 6.734 21 H 0.339 0.661 22 H 0.163 0.837 23 H 0.135 0.865 24 H 0.135 0.865 25 H 0.262 0.738 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.992 4.682 0.029 7.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.210 5.210 2 C -0.283 4.283 3 Si 0.786 3.214 4 H -0.141 1.141 5 H -0.169 1.169 6 H -0.169 1.169 7 C 0.047 3.953 8 H 0.218 0.782 9 C -0.282 4.282 10 S 0.217 5.783 11 C -0.259 4.259 12 C -0.148 4.148 13 C -0.009 4.009 14 C -0.173 4.173 15 C -0.122 4.122 16 C 0.053 3.947 17 F -0.124 7.124 18 C 0.115 3.885 19 O -0.607 6.607 20 O -0.561 6.561 21 H 0.155 0.845 22 H 0.181 0.819 23 H 0.153 0.847 24 H 0.153 0.847 25 H 0.090 0.910 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.221 6.169 0.054 11.095 hybrid contribution 0.162 -0.436 -0.029 0.466 sum -9.060 5.732 0.025 10.721 Atomic orbital electron populations 1.68801 1.09794 1.36224 1.06182 1.28544 0.96273 1.07805 0.95651 0.85118 0.82340 0.72869 0.81118 1.14094 1.16882 1.16885 1.23751 1.03066 0.87848 0.80654 0.78193 1.26544 0.91656 1.01443 1.08587 1.85607 1.18379 0.92171 1.82140 1.25212 0.98379 1.02382 0.99932 1.22158 0.88839 0.98609 1.05222 1.21718 1.01283 0.91023 0.86923 1.20722 0.91378 1.00417 1.04794 1.21180 0.98564 0.92871 0.99629 1.16999 0.77200 0.91724 1.08753 1.91448 1.35637 1.90815 1.94476 1.54845 1.27038 0.79870 0.26746 1.93889 1.17722 1.49174 1.99939 1.94064 1.15059 1.47110 1.99913 0.84463 0.81946 0.84730 0.84699 0.91025 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.59 -10.01 10.55 55.59 0.59 -9.42 15 2 C -0.05 -0.76 5.51 -17.22 -0.09 -0.85 15 3 Si 0.97 11.40 29.57 -169.99 -5.03 6.38 15 4 H -0.22 -2.74 7.11 56.52 0.40 -2.34 15 5 H -0.25 -2.70 7.11 56.52 0.40 -2.29 15 6 H -0.25 -2.70 7.11 56.52 0.40 -2.29 15 7 C 0.07 1.58 8.92 -38.18 -0.34 1.24 15 8 H 0.20 4.54 5.09 -52.49 -0.27 4.27 15 9 C -0.17 -4.23 6.13 -39.02 -0.24 -4.47 15 10 S -0.05 -1.23 20.02 -107.50 -2.15 -3.39 15 11 C -0.14 -3.42 6.43 -38.19 -0.25 -3.66 15 12 C -0.14 -3.57 6.03 -105.19 -0.63 -4.20 15 13 C 0.01 0.22 9.68 -39.13 -0.38 -0.16 15 14 C -0.15 -2.71 9.95 -40.11 -0.40 -3.11 15 15 C -0.10 -1.78 10.01 -39.51 -0.40 -2.18 15 16 C 0.08 1.62 7.33 -39.06 -0.29 1.34 15 17 F -0.14 -2.93 17.26 2.25 0.04 -2.89 15 18 C 0.14 3.83 10.13 -36.69 -0.37 3.46 15 19 O -0.78 -23.98 14.76 -57.73 -0.85 -24.83 15 20 O -0.73 -23.20 15.50 -57.73 -0.90 -24.10 15 21 H 0.34 4.41 8.29 -40.82 -0.34 4.08 15 22 H 0.16 3.87 6.12 -52.49 -0.32 3.55 15 23 H 0.13 1.85 8.06 -52.49 -0.42 1.42 15 24 H 0.14 1.83 8.06 -52.49 -0.42 1.40 15 25 H 0.26 7.59 8.90 45.56 0.41 8.00 15 26 H 0.26 7.75 8.90 45.56 0.41 8.16 15 LS Contribution 262.51 15.07 3.96 3.96 Total: -1.00 -35.45 262.51 -7.49 -42.94 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.24 Total: 23.95 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -3.39 Total: -12.60 kcal Atomic # 7 Polarization: -10.01 SS G_CDS: 0.59 Total: -9.42 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -1.75 Total: -48.93 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 11.40 SS G_CDS: -5.03 Total: 6.38 kcal Atomic # 16 Polarization: -1.23 SS G_CDS: -2.15 Total: -3.39 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -35.45 -7.49 -42.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396370550.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.941 kcal (2) G-P(sol) polarization free energy of solvation -35.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds