Wall clock time and date at job start Mon Mar 30 2020 04:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38097 * 120.00326 * 2 1 4 4 C 1.38847 * 120.00754 * 179.97438 * 3 2 1 5 5 N 1.40001 * 119.99761 * 179.97438 * 4 3 2 6 6 C 1.38899 * 120.00800 * 359.70847 * 4 3 2 7 7 C 1.38046 * 120.00758 * 0.55016 * 6 4 3 8 8 C 1.38895 * 120.00250 * 179.97438 * 2 1 3 9 9 S 1.76200 * 120.00619 * 359.97438 * 8 2 1 10 10 C 1.81408 * 102.99750 * 180.02562 * 9 8 2 11 11 C 1.50701 * 109.46780 * 180.02562 * 10 9 8 12 12 O 1.21295 * 119.99960 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99962 * 179.97438 * 11 10 9 14 14 C 1.37099 * 120.00146 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00133 * 0.02562 * 14 13 11 16 16 C 1.38955 * 119.99905 * 180.02562 * 14 13 11 17 17 N 1.31410 * 120.00049 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99577 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47372 * 60.00348 * 18 16 14 20 20 H 1.48505 * 109.47104 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47444 * 299.99768 * 18 16 14 22 22 H 1.08998 * 109.46860 * 270.01496 * 1 2 3 23 23 H 1.09001 * 109.46730 * 30.01971 * 1 2 3 24 24 H 1.09007 * 109.46786 * 150.01762 * 1 2 3 25 25 H 1.08002 * 119.99267 * 359.97438 * 3 2 1 26 26 H 0.97000 * 119.99778 * 0.02562 * 5 4 3 27 27 H 0.97002 * 120.00332 * 180.02562 * 5 4 3 28 28 H 1.08004 * 119.99804 * 180.29562 * 6 4 3 29 29 H 1.08002 * 120.00704 * 179.75308 * 7 6 4 30 30 H 1.08998 * 109.47236 * 299.99863 * 10 9 8 31 31 H 1.08994 * 109.47007 * 59.99957 * 10 9 8 32 32 H 0.96997 * 119.99825 * 0.02562 * 13 11 10 33 33 H 0.96998 * 119.99917 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1959 0.0000 4 6 3.5861 1.1960 0.0005 5 7 4.2859 2.4085 0.0000 6 6 4.2808 -0.0067 0.0072 7 6 3.5910 -1.2025 0.0018 8 6 2.2016 -1.2028 0.0005 9 16 1.3208 -2.7289 0.0019 10 6 2.6478 -3.9658 0.0030 11 6 2.0464 -5.3476 0.0036 12 8 0.8411 -5.4845 0.0028 13 7 2.8476 -6.4313 0.0039 14 6 2.3005 -7.6884 0.0040 15 1 1.2274 -7.8104 0.0033 16 6 3.1267 -8.8057 0.0048 17 7 4.4324 -8.6574 0.0052 18 14 2.3812 -10.5184 0.0041 19 1 1.5431 -10.6930 -1.2092 20 1 3.4674 -11.5311 0.0059 21 1 1.5406 -10.6930 1.2157 22 1 -0.3633 0.0003 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5136 25 1 1.6575 2.1312 -0.0004 26 1 3.8008 3.2485 -0.0004 27 1 5.2559 2.4087 0.0000 28 1 5.3608 -0.0064 0.0124 29 1 4.1313 -2.1377 0.0029 30 1 3.2639 -3.8386 -0.8871 31 1 3.2639 -3.8369 0.8928 32 1 3.8114 -6.3218 0.0042 33 1 5.0091 -9.4373 0.0062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037193935.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:10 Heat of formation + Delta-G solvation = -20.831447 kcal Electronic energy + Delta-G solvation = -16781.598407 eV Core-core repulsion = 13932.796752 eV Total energy + Delta-G solvation = -2848.801655 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.32723 -38.14247 -34.84884 -34.02787 -32.47230 -31.36927 -29.44252 -28.69500 -26.83647 -24.65866 -22.45362 -21.43512 -19.53001 -18.05866 -17.19942 -16.92738 -16.51957 -15.93037 -14.78071 -14.60579 -14.56369 -14.34001 -13.87784 -13.78447 -13.51534 -13.01702 -12.55098 -12.44544 -12.09216 -12.02985 -11.82877 -11.45608 -11.07528 -11.02416 -10.78718 -10.46752 -10.25966 -9.63480 -9.57136 -8.73427 -8.56908 -8.39178 -8.04749 -6.66577 -6.47674 -3.89054 1.41503 1.52696 1.89800 2.93613 3.17394 3.24072 3.28856 3.74741 3.78005 3.80571 4.13970 4.80991 4.87880 4.91960 5.16256 5.24640 5.42113 5.50993 5.63375 5.68362 5.71193 5.79063 5.88968 6.11933 6.16696 6.27826 6.32321 6.57955 6.79199 7.38303 7.50069 7.62062 7.95993 8.50372 9.09318 9.43245 9.93201 10.69650 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.040496 B = 0.003740 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.255992 B = 7484.034593 C = 8154.843627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.022 4.022 3 C -0.182 4.182 4 C 0.203 3.797 5 N -0.883 5.883 6 C -0.183 4.183 7 C -0.084 4.084 8 C -0.152 4.152 9 S -0.037 6.037 10 C -0.136 4.136 11 C 0.454 3.546 12 O -0.578 6.578 13 N -0.552 5.552 14 C -0.302 4.302 15 H 0.105 0.895 16 C 0.025 3.975 17 N -0.899 5.899 18 Si 0.933 3.067 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.272 1.272 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.120 0.880 26 H 0.395 0.605 27 H 0.396 0.604 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.394 0.606 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.501 19.373 0.014 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.028 4.028 3 C -0.206 4.206 4 C 0.098 3.902 5 N -0.423 5.423 6 C -0.207 4.207 7 C -0.109 4.109 8 C -0.266 4.266 9 S 0.206 5.794 10 C -0.287 4.287 11 C 0.238 3.762 12 O -0.463 6.463 13 N -0.188 5.188 14 C -0.432 4.432 15 H 0.123 0.877 16 C -0.177 4.177 17 N -0.540 5.540 18 Si 0.760 3.240 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.198 1.198 22 H 0.093 0.907 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.138 0.862 26 H 0.223 0.777 27 H 0.223 0.777 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.227 0.773 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.368 18.719 0.012 18.722 hybrid contribution 2.243 -0.196 0.001 2.252 sum 1.875 18.522 0.014 18.617 Atomic orbital electron populations 1.20824 0.90893 1.02986 1.02813 1.19230 0.95660 0.90649 0.97291 1.20319 0.91843 0.97505 1.10969 1.17729 0.91275 0.86312 0.94883 1.42467 1.08670 1.04953 1.86249 1.20442 0.99164 0.90947 1.10130 1.20995 0.92640 0.98088 0.99157 1.21872 0.96399 0.98297 1.10048 1.85945 1.09658 0.91762 1.91987 1.23754 1.01549 0.97650 1.05795 1.18938 0.87484 0.84234 0.85512 1.90561 1.14042 1.85750 1.55931 1.41752 1.08759 1.04752 1.63551 1.19704 0.94356 0.81068 1.48062 0.87707 1.25297 0.95165 1.00335 0.96941 1.69604 1.02664 1.31830 1.49867 0.85875 0.78272 0.80651 0.79206 1.19758 1.20905 1.19764 0.90651 0.91513 0.90458 0.86174 0.77721 0.77663 0.86292 0.85813 0.88367 0.88342 0.77257 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 9.57 36.01 0.34 -1.04 16 2 C -0.02 -0.29 5.90 -104.43 -0.62 -0.91 16 3 C -0.18 -2.12 9.54 -39.41 -0.38 -2.50 16 4 C 0.20 2.27 6.76 -83.66 -0.57 1.71 16 5 N -0.88 -6.68 9.10 32.46 0.30 -6.38 16 6 C -0.18 -2.21 9.89 -39.41 -0.39 -2.60 16 7 C -0.08 -1.18 9.36 -39.39 -0.37 -1.55 16 8 C -0.15 -2.32 6.11 -39.08 -0.24 -2.56 16 9 S -0.04 -0.66 19.25 -107.50 -2.07 -2.73 16 10 C -0.14 -2.51 4.81 36.01 0.17 -2.34 16 11 C 0.45 10.94 7.80 -10.99 -0.09 10.85 16 12 O -0.58 -15.95 15.44 5.54 0.09 -15.86 16 13 N -0.55 -14.05 5.29 -10.96 -0.06 -14.10 16 14 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 15 H 0.11 3.05 7.16 -52.48 -0.38 2.67 16 16 C 0.02 0.66 5.50 -17.47 -0.10 0.57 16 17 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 18 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 24 H 0.08 1.01 6.77 -51.92 -0.35 0.66 16 25 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 26 H 0.40 2.24 8.84 -40.82 -0.36 1.88 16 27 H 0.40 2.33 8.84 -40.82 -0.36 1.97 16 28 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 29 H 0.12 1.64 5.87 -52.49 -0.31 1.33 16 30 H 0.10 1.62 7.75 -51.92 -0.40 1.22 16 31 H 0.10 1.63 7.74 -51.93 -0.40 1.22 16 32 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 33 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 299.44 15.07 4.51 4.51 Total: -1.00 -31.79 299.44 -7.60 -39.39 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -3.71 Total: 11.73 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -2.36 Total: -8.93 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.96 Total: -44.00 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.09 Total: -15.86 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -0.66 SS G_CDS: -2.07 Total: -2.73 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.79 -7.60 -39.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037193935.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.560 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds