Wall clock time and date at job start Mon Mar 30 2020 04:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38097 * 120.00326 * 2 1 4 4 C 1.38847 * 120.00754 * 179.97438 * 3 2 1 5 5 N 1.40001 * 119.99761 * 179.97438 * 4 3 2 6 6 C 1.38899 * 120.00800 * 359.70847 * 4 3 2 7 7 C 1.38046 * 120.00758 * 0.55016 * 6 4 3 8 8 C 1.38895 * 120.00250 * 179.97438 * 2 1 3 9 9 S 1.76200 * 120.00619 * 359.97438 * 8 2 1 10 10 C 1.81408 * 102.99750 * 180.02562 * 9 8 2 11 11 C 1.50701 * 109.46780 * 180.02562 * 10 9 8 12 12 O 1.21295 * 119.99960 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99962 * 179.97438 * 11 10 9 14 14 C 1.37099 * 120.00146 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00133 * 0.02562 * 14 13 11 16 16 C 1.38955 * 119.99905 * 180.02562 * 14 13 11 17 17 N 1.31410 * 120.00049 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99577 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47372 * 60.00348 * 18 16 14 20 20 H 1.48505 * 109.47104 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47444 * 299.99768 * 18 16 14 22 22 H 1.08998 * 109.46860 * 270.01496 * 1 2 3 23 23 H 1.09001 * 109.46730 * 30.01971 * 1 2 3 24 24 H 1.09007 * 109.46786 * 150.01762 * 1 2 3 25 25 H 1.08002 * 119.99267 * 359.97438 * 3 2 1 26 26 H 0.97000 * 119.99778 * 0.02562 * 5 4 3 27 27 H 0.97002 * 120.00332 * 180.02562 * 5 4 3 28 28 H 1.08004 * 119.99804 * 180.29562 * 6 4 3 29 29 H 1.08002 * 120.00704 * 179.75308 * 7 6 4 30 30 H 1.08998 * 109.47236 * 299.99863 * 10 9 8 31 31 H 1.08994 * 109.47007 * 59.99957 * 10 9 8 32 32 H 0.96997 * 119.99825 * 0.02562 * 13 11 10 33 33 H 0.96998 * 119.99917 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1959 0.0000 4 6 3.5861 1.1960 0.0005 5 7 4.2859 2.4085 0.0000 6 6 4.2808 -0.0067 0.0072 7 6 3.5910 -1.2025 0.0018 8 6 2.2016 -1.2028 0.0005 9 16 1.3208 -2.7289 0.0019 10 6 2.6478 -3.9658 0.0030 11 6 2.0464 -5.3476 0.0036 12 8 0.8411 -5.4845 0.0028 13 7 2.8476 -6.4313 0.0039 14 6 2.3005 -7.6884 0.0040 15 1 1.2274 -7.8104 0.0033 16 6 3.1267 -8.8057 0.0048 17 7 4.4324 -8.6574 0.0052 18 14 2.3812 -10.5184 0.0041 19 1 1.5431 -10.6930 -1.2092 20 1 3.4674 -11.5311 0.0059 21 1 1.5406 -10.6930 1.2157 22 1 -0.3633 0.0003 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5136 25 1 1.6575 2.1312 -0.0004 26 1 3.8008 3.2485 -0.0004 27 1 5.2559 2.4087 0.0000 28 1 5.3608 -0.0064 0.0124 29 1 4.1313 -2.1377 0.0029 30 1 3.2639 -3.8386 -0.8871 31 1 3.2639 -3.8369 0.8928 32 1 3.8114 -6.3218 0.0042 33 1 5.0091 -9.4373 0.0062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037193935.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:09 Heat of formation + Delta-G solvation = -42.469329 kcal Electronic energy + Delta-G solvation = -16782.536696 eV Core-core repulsion = 13932.796752 eV Total energy + Delta-G solvation = -2849.739944 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.26076 -40.10896 -36.08033 -35.66998 -33.56765 -33.28448 -30.93751 -29.69793 -27.79490 -26.65710 -23.41388 -22.45332 -21.34063 -20.05484 -18.46684 -17.78550 -17.67886 -17.37325 -16.53139 -16.28193 -16.07986 -15.49797 -15.20948 -14.89098 -14.80087 -14.16773 -13.93241 -13.78517 -13.56412 -13.40449 -12.96866 -12.91094 -12.80986 -12.47193 -12.12228 -11.96352 -11.75271 -11.56764 -10.92043 -10.56117 -10.10255 -9.69053 -9.39121 -8.51660 -7.81156 -6.01543 0.45922 0.53187 0.55630 1.37801 1.41874 1.53068 1.65786 1.91060 2.28271 2.84821 3.03466 3.09797 3.14221 3.89789 3.99262 4.11838 4.15764 4.34816 4.37427 4.53728 4.61215 4.81720 4.83384 4.99969 5.21797 5.35823 5.37265 5.37823 5.62190 5.88241 5.90282 6.48744 6.62571 7.03647 7.06901 7.42577 7.96845 8.65322 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.040496 B = 0.003740 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.255992 B = 7484.034593 C = 8154.843627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.030 4.030 3 C -0.187 4.187 4 C 0.212 3.788 5 N -0.866 5.866 6 C -0.192 4.192 7 C -0.094 4.094 8 C -0.173 4.173 9 S -0.083 6.083 10 C -0.120 4.120 11 C 0.451 3.549 12 O -0.617 6.617 13 N -0.559 5.559 14 C -0.339 4.339 15 H 0.082 0.918 16 C -0.008 4.008 17 N -0.916 5.916 18 Si 0.996 3.004 19 H -0.271 1.271 20 H -0.268 1.268 21 H -0.271 1.271 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.057 0.943 25 H 0.147 0.853 26 H 0.408 0.592 27 H 0.407 0.593 28 H 0.140 0.860 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.399 0.601 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.676 21.161 0.022 21.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.036 4.036 3 C -0.211 4.211 4 C 0.105 3.895 5 N -0.407 5.407 6 C -0.216 4.216 7 C -0.118 4.118 8 C -0.288 4.288 9 S 0.159 5.841 10 C -0.270 4.270 11 C 0.237 3.763 12 O -0.505 6.505 13 N -0.196 5.196 14 C -0.469 4.469 15 H 0.100 0.900 16 C -0.209 4.209 17 N -0.556 5.556 18 Si 0.819 3.181 19 H -0.196 1.196 20 H -0.193 1.193 21 H -0.196 1.196 22 H 0.098 0.902 23 H 0.110 0.890 24 H 0.076 0.924 25 H 0.165 0.835 26 H 0.237 0.763 27 H 0.236 0.764 28 H 0.158 0.842 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.233 0.767 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.862 20.569 0.020 20.587 hybrid contribution 1.936 -0.540 -0.001 2.010 sum 2.798 20.029 0.019 20.224 Atomic orbital electron populations 1.20843 0.90187 1.03214 1.03179 1.19504 0.96488 0.90729 0.96881 1.20583 0.92273 0.97768 1.10451 1.17873 0.91422 0.87239 0.93002 1.42460 1.09392 1.04324 1.84531 1.20678 1.00306 0.90610 1.10016 1.21120 0.92252 0.99098 0.99324 1.21739 0.96790 0.96774 1.13452 1.86024 1.10919 0.94023 1.93156 1.23519 1.01653 0.94195 1.07683 1.19783 0.87016 0.85933 0.83535 1.90528 1.15953 1.86859 1.57130 1.41791 1.09055 1.04676 1.64038 1.19696 0.93761 0.82801 1.50600 0.89984 1.26091 0.95556 1.03514 0.95742 1.69661 1.03423 1.33150 1.49397 0.84950 0.77863 0.76228 0.79088 1.19568 1.19278 1.19574 0.90213 0.88983 0.92417 0.83495 0.76264 0.76384 0.84187 0.85759 0.86367 0.86332 0.76677 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.57 71.24 0.68 -1.98 16 2 C -0.03 -0.76 5.90 -19.74 -0.12 -0.88 16 3 C -0.19 -3.81 9.54 22.38 0.21 -3.60 16 4 C 0.21 4.07 6.76 38.14 0.26 4.33 16 5 N -0.87 -9.73 9.10 -51.21 -0.47 -10.20 16 6 C -0.19 -4.17 9.89 22.38 0.22 -3.95 16 7 C -0.09 -2.52 9.36 22.39 0.21 -2.31 16 8 C -0.17 -5.22 6.11 22.60 0.14 -5.08 16 9 S -0.08 -3.05 19.25 -56.49 -1.09 -4.13 16 10 C -0.12 -4.46 4.81 71.24 0.34 -4.12 16 11 C 0.45 22.37 7.80 87.66 0.68 23.05 16 12 O -0.62 -35.47 15.44 -3.08 -0.05 -35.52 16 13 N -0.56 -29.18 5.29 -306.98 -1.62 -30.81 16 14 C -0.34 -19.40 9.68 84.04 0.81 -18.59 16 15 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 16 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 17 N -0.92 -49.17 13.05 21.66 0.28 -48.89 16 18 Si 1.00 42.76 29.55 68.60 2.03 44.78 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 22 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.09 1.56 8.09 -2.39 -0.02 1.54 16 24 H 0.06 1.54 6.77 -2.38 -0.02 1.52 16 25 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 26 H 0.41 2.93 8.84 -92.71 -0.82 2.11 16 27 H 0.41 3.19 8.84 -92.71 -0.82 2.37 16 28 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 29 H 0.12 3.19 5.87 -2.91 -0.02 3.17 16 30 H 0.12 3.89 7.75 -2.39 -0.02 3.87 16 31 H 0.12 3.90 7.74 -2.39 -0.02 3.88 16 32 H 0.40 19.57 7.90 -92.71 -0.73 18.83 16 33 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -69.63 299.44 1.80 -67.83 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: -1.20 Total: 30.04 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 3.91 Total: -13.10 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -1.81 Total: -89.89 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -0.05 Total: -35.52 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -1.09 Total: -4.13 kcal Total: -69.63 1.80 -67.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037193935.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.356 kcal (2) G-P(sol) polarization free energy of solvation -69.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds