Wall clock time and date at job start Mon Mar 30 2020 04:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38305 * 119.93944 * 2 1 4 4 C 1.38264 * 120.16971 * 180.27823 * 3 2 1 5 5 C 1.38304 * 120.05059 * 359.44348 * 4 3 2 6 6 F 1.35099 * 120.06199 * 180.25503 * 5 4 3 7 7 C 1.39115 * 119.87959 * 0.27444 * 5 4 3 8 8 N 1.39828 * 120.08413 * 180.02562 * 7 5 4 9 9 C 1.34777 * 119.99983 * 145.32166 * 8 7 5 10 10 O 1.21472 * 119.99636 * 4.46871 * 9 8 7 11 11 C 1.48723 * 119.99689 * 184.46437 * 9 8 7 12 12 O 1.21508 * 120.00542 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99689 * 180.02562 * 11 9 8 14 14 C 1.36123 * 119.99926 * 180.02562 * 13 11 9 15 15 H 1.07996 * 120.00393 * 359.97438 * 14 13 11 16 16 C 1.39589 * 120.00145 * 180.02562 * 14 13 11 17 17 N 1.31023 * 119.99791 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00210 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47193 * 89.99526 * 18 16 14 20 20 H 1.48503 * 109.47033 * 209.99583 * 18 16 14 21 21 H 1.48503 * 109.46816 * 329.99327 * 18 16 14 22 22 C 1.38118 * 119.94002 * 179.72079 * 2 1 3 23 23 H 1.09005 * 109.46961 * 270.27519 * 1 2 3 24 24 H 1.08995 * 109.47338 * 30.27792 * 1 2 3 25 25 H 1.08998 * 109.46950 * 150.27761 * 1 2 3 26 26 H 1.08003 * 119.91259 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.97665 * 179.72125 * 4 3 2 28 28 H 0.97002 * 119.99865 * 325.32043 * 8 7 5 29 29 H 0.97000 * 120.00259 * 0.02562 * 13 11 9 30 30 H 0.97000 * 119.99659 * 180.02562 * 17 16 14 31 31 H 1.07995 * 120.02839 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1985 0.0000 4 6 3.5799 1.2041 -0.0058 5 6 4.2773 0.0098 0.0000 6 9 5.6283 0.0150 -0.0005 7 6 3.5852 -1.1970 0.0059 8 7 4.2860 -2.4069 0.0123 9 6 3.7929 -3.4678 0.6817 10 8 2.7018 -3.3981 1.2111 11 6 4.5845 -4.7235 0.7719 12 8 5.6761 -4.7931 0.2426 13 7 4.0912 -5.7845 1.4408 14 6 4.8160 -6.9337 1.5238 15 1 5.7861 -6.9956 1.0534 16 6 4.3048 -8.0328 2.2161 17 7 3.1276 -7.9580 2.7865 18 14 5.2991 -9.6101 2.3295 19 1 6.1625 -9.5653 3.5368 20 1 4.3773 -10.7707 2.4228 21 1 6.1479 -9.7482 1.1187 22 6 2.1964 -1.1968 0.0058 23 1 -0.3633 0.0049 1.0277 24 1 -0.3634 0.8874 -0.5181 25 1 -0.3633 -0.8925 -0.5095 26 1 1.6549 2.1324 -0.0004 27 1 4.1158 2.1418 -0.0103 28 1 5.1270 -2.4828 -0.4650 29 1 3.2197 -5.7292 1.8630 30 1 2.7726 -8.7217 3.2679 31 1 1.6559 -2.1318 0.0100 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037244026.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:48 Heat of formation + Delta-G solvation = -94.105975 kcal Electronic energy + Delta-G solvation = -19247.256280 eV Core-core repulsion = 15829.064027 eV Total energy + Delta-G solvation = -3418.192253 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.085 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.80624 -40.33075 -38.75675 -37.27857 -35.02372 -34.11373 -32.19667 -31.52404 -29.86279 -26.69018 -26.04561 -24.00968 -22.50277 -21.15380 -19.62003 -18.50987 -17.88372 -17.18328 -16.55484 -16.18906 -15.70928 -15.31736 -14.84148 -14.64452 -14.31919 -13.99199 -13.93564 -13.66079 -13.35854 -12.96201 -12.79512 -12.13280 -11.92607 -11.85517 -11.76810 -11.46043 -11.26514 -10.61860 -10.49154 -10.44244 -10.18803 -9.81584 -8.69236 -8.41583 -8.33998 -8.02947 -6.78487 -4.09304 1.06071 1.21886 2.26428 3.03642 3.09030 3.13751 3.21657 3.57685 3.97000 4.13943 4.24865 4.67903 4.71894 4.86632 5.07673 5.11399 5.21915 5.41270 5.56737 5.68239 5.79666 5.92736 6.01204 6.07243 6.26107 6.42379 6.56971 6.99720 7.20563 7.44474 7.69085 8.15423 8.40087 8.83428 9.17817 9.72156 10.35776 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.033167 B = 0.004361 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.000526 B = 6419.716458 C = 7146.944778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.079 4.079 3 C -0.117 4.117 4 C -0.132 4.132 5 C 0.060 3.940 6 F -0.137 7.137 7 C 0.132 3.868 8 N -0.655 5.655 9 C 0.515 3.485 10 O -0.526 6.526 11 C 0.390 3.610 12 O -0.595 6.595 13 N -0.491 5.491 14 C -0.303 4.303 15 H 0.115 0.885 16 C 0.032 3.968 17 N -0.863 5.863 18 Si 0.941 3.059 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.263 1.263 22 C -0.100 4.100 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.130 0.870 27 H 0.136 0.864 28 H 0.423 0.577 29 H 0.405 0.595 30 H 0.283 0.717 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.146 14.094 -4.472 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.079 4.079 3 C -0.136 4.136 4 C -0.152 4.152 5 C 0.038 3.962 6 F -0.116 7.116 7 C 0.035 3.965 8 N -0.301 5.301 9 C 0.302 3.698 10 O -0.401 6.401 11 C 0.174 3.826 12 O -0.483 6.483 13 N -0.125 5.125 14 C -0.434 4.434 15 H 0.133 0.867 16 C -0.175 4.175 17 N -0.501 5.501 18 Si 0.766 3.234 19 H -0.198 1.198 20 H -0.204 1.204 21 H -0.188 1.188 22 C -0.120 4.120 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.148 0.852 27 H 0.154 0.846 28 H 0.262 0.738 29 H 0.241 0.759 30 H 0.093 0.907 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.268 13.865 -4.292 15.128 hybrid contribution 0.638 -0.684 0.193 0.955 sum -3.630 13.181 -4.099 14.272 Atomic orbital electron populations 1.20771 0.90528 1.02838 1.02683 1.19879 0.96590 0.92352 0.99119 1.20815 0.92915 0.97896 1.01926 1.20904 0.94843 0.96301 1.03117 1.17531 0.76981 0.93307 1.08358 1.91487 1.28540 1.97286 1.94286 1.17857 0.92053 0.84486 1.02079 1.43143 1.26426 1.08725 1.51849 1.20959 0.86281 0.85197 0.77375 1.90681 1.20814 1.83038 1.45558 1.18615 0.88768 0.84805 0.90366 1.90611 1.21899 1.83025 1.52814 1.41567 1.19200 1.10076 1.41657 1.19952 1.03029 0.88422 1.32002 0.86722 1.25641 0.96208 1.00410 0.95288 1.69484 1.16526 1.32987 1.31071 0.85678 0.79066 0.79145 0.79465 1.19753 1.20392 1.18759 1.21221 0.91485 0.99658 0.99638 0.90830 0.91474 0.91213 0.85188 0.84568 0.73838 0.75915 0.90692 0.83101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 36.01 0.36 -0.69 16 2 C -0.08 -0.96 5.88 -104.64 -0.62 -1.58 16 3 C -0.12 -1.25 9.69 -39.55 -0.38 -1.63 16 4 C -0.13 -1.55 10.02 -39.55 -0.40 -1.94 16 5 C 0.06 0.88 7.31 -39.23 -0.29 0.60 16 6 F -0.14 -2.11 16.96 2.25 0.04 -2.07 16 7 C 0.13 2.18 6.31 -83.65 -0.53 1.65 16 8 N -0.66 -12.14 5.21 -10.42 -0.05 -12.19 16 9 C 0.52 11.17 7.71 -11.93 -0.09 11.07 16 10 O -0.53 -11.77 13.88 5.39 0.07 -11.69 16 11 C 0.39 9.72 7.81 -11.93 -0.09 9.62 16 12 O -0.59 -15.89 16.04 5.36 0.09 -15.81 16 13 N -0.49 -12.84 5.25 -11.62 -0.06 -12.90 16 14 C -0.30 -8.18 9.68 -15.14 -0.15 -8.32 16 15 H 0.12 3.16 7.15 -52.49 -0.38 2.78 16 16 C 0.03 0.82 5.51 -17.39 -0.10 0.72 16 17 N -0.86 -22.46 13.03 55.53 0.72 -21.74 16 18 Si 0.94 19.57 29.56 -169.99 -5.02 14.55 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 22 C -0.10 -1.54 8.35 -39.39 -0.33 -1.87 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 25 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 26 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 27 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.42 7.49 8.12 -40.82 -0.33 7.16 16 29 H 0.41 10.57 7.35 -40.82 -0.30 10.27 16 30 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 31 H 0.15 2.55 6.20 -52.49 -0.33 2.22 16 LS Contribution 287.05 15.07 4.33 4.33 Total: -1.00 -29.47 287.05 -5.07 -34.54 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -2.57 Total: 15.35 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -2.61 Total: 7.63 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.61 Total: -46.83 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: 0.16 Total: -27.50 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.47 -5.07 -34.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037244026.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.568 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds