Wall clock time and date at job start Mon Mar 30 2020 04:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38305 * 119.93944 * 2 1 4 4 C 1.38264 * 120.16971 * 180.27823 * 3 2 1 5 5 C 1.38304 * 120.05059 * 359.44348 * 4 3 2 6 6 F 1.35099 * 120.06199 * 180.25503 * 5 4 3 7 7 C 1.39115 * 119.87959 * 0.27444 * 5 4 3 8 8 N 1.39828 * 120.08413 * 180.02562 * 7 5 4 9 9 C 1.34777 * 119.99983 * 145.32166 * 8 7 5 10 10 O 1.21472 * 119.99636 * 4.46871 * 9 8 7 11 11 C 1.48723 * 119.99689 * 184.46437 * 9 8 7 12 12 O 1.21508 * 120.00542 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99689 * 180.02562 * 11 9 8 14 14 C 1.36123 * 119.99926 * 180.02562 * 13 11 9 15 15 H 1.07996 * 120.00393 * 359.97438 * 14 13 11 16 16 C 1.39589 * 120.00145 * 180.02562 * 14 13 11 17 17 N 1.31023 * 119.99791 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00210 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47193 * 89.99526 * 18 16 14 20 20 H 1.48503 * 109.47033 * 209.99583 * 18 16 14 21 21 H 1.48503 * 109.46816 * 329.99327 * 18 16 14 22 22 C 1.38118 * 119.94002 * 179.72079 * 2 1 3 23 23 H 1.09005 * 109.46961 * 270.27519 * 1 2 3 24 24 H 1.08995 * 109.47338 * 30.27792 * 1 2 3 25 25 H 1.08998 * 109.46950 * 150.27761 * 1 2 3 26 26 H 1.08003 * 119.91259 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.97665 * 179.72125 * 4 3 2 28 28 H 0.97002 * 119.99865 * 325.32043 * 8 7 5 29 29 H 0.97000 * 120.00259 * 0.02562 * 13 11 9 30 30 H 0.97000 * 119.99659 * 180.02562 * 17 16 14 31 31 H 1.07995 * 120.02839 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1985 0.0000 4 6 3.5799 1.2041 -0.0058 5 6 4.2773 0.0098 0.0000 6 9 5.6283 0.0150 -0.0005 7 6 3.5852 -1.1970 0.0059 8 7 4.2860 -2.4069 0.0123 9 6 3.7929 -3.4678 0.6817 10 8 2.7018 -3.3981 1.2111 11 6 4.5845 -4.7235 0.7719 12 8 5.6761 -4.7931 0.2426 13 7 4.0912 -5.7845 1.4408 14 6 4.8160 -6.9337 1.5238 15 1 5.7861 -6.9956 1.0534 16 6 4.3048 -8.0328 2.2161 17 7 3.1276 -7.9580 2.7865 18 14 5.2991 -9.6101 2.3295 19 1 6.1625 -9.5653 3.5368 20 1 4.3773 -10.7707 2.4228 21 1 6.1479 -9.7482 1.1187 22 6 2.1964 -1.1968 0.0058 23 1 -0.3633 0.0049 1.0277 24 1 -0.3634 0.8874 -0.5181 25 1 -0.3633 -0.8925 -0.5095 26 1 1.6549 2.1324 -0.0004 27 1 4.1158 2.1418 -0.0103 28 1 5.1270 -2.4828 -0.4650 29 1 3.2197 -5.7292 1.8630 30 1 2.7726 -8.7217 3.2679 31 1 1.6559 -2.1318 0.0100 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037244026.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:47 Heat of formation + Delta-G solvation = -114.284023 kcal Electronic energy + Delta-G solvation = -19248.131266 eV Core-core repulsion = 15829.064027 eV Total energy + Delta-G solvation = -3419.067239 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.085 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.96426 -41.89583 -40.18831 -39.02262 -36.71952 -35.88142 -33.56124 -33.13338 -31.09570 -28.00914 -27.57244 -25.58845 -23.79825 -22.36086 -21.30853 -20.48473 -19.38161 -18.45741 -18.07559 -17.50785 -17.28165 -16.84428 -16.49563 -16.31662 -15.76517 -15.31517 -15.11077 -14.85642 -14.78079 -14.46390 -14.26733 -13.72104 -13.10821 -13.00297 -12.92932 -12.76971 -12.64782 -12.56810 -12.12739 -12.04918 -11.72439 -11.46564 -10.36541 -10.34904 -9.74769 -9.23273 -8.72960 -6.17108 -0.12581 0.15860 0.58054 1.37743 1.44702 1.51315 1.62190 2.22001 2.24328 2.56618 3.03185 3.07938 3.15579 3.71670 3.84978 3.92458 4.19562 4.25045 4.38371 4.76631 4.86681 4.89942 5.01499 5.13615 5.19608 5.23290 5.30346 5.53529 5.60128 5.89798 5.93910 6.23889 6.64248 6.85138 7.16357 7.70013 8.42387 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.033167 B = 0.004361 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.000526 B = 6419.716458 C = 7146.944778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.077 4.077 3 C -0.097 4.097 4 C -0.122 4.122 5 C 0.047 3.953 6 F -0.145 7.145 7 C 0.094 3.906 8 N -0.644 5.644 9 C 0.523 3.477 10 O -0.537 6.537 11 C 0.385 3.615 12 O -0.617 6.617 13 N -0.500 5.500 14 C -0.345 4.345 15 H 0.101 0.899 16 C -0.001 4.001 17 N -0.889 5.889 18 Si 1.012 2.988 19 H -0.264 1.264 20 H -0.264 1.264 21 H -0.263 1.263 22 C -0.119 4.119 23 H 0.079 0.921 24 H 0.098 0.902 25 H 0.063 0.937 26 H 0.176 0.824 27 H 0.171 0.829 28 H 0.425 0.575 29 H 0.403 0.597 30 H 0.292 0.708 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.925 16.046 -4.515 17.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.078 4.078 3 C -0.115 4.115 4 C -0.140 4.140 5 C 0.026 3.974 6 F -0.124 7.124 7 C 0.000 4.000 8 N -0.290 5.290 9 C 0.308 3.692 10 O -0.414 6.414 11 C 0.170 3.830 12 O -0.508 6.508 13 N -0.133 5.133 14 C -0.474 4.474 15 H 0.118 0.882 16 C -0.206 4.206 17 N -0.526 5.526 18 Si 0.832 3.168 19 H -0.189 1.189 20 H -0.189 1.189 21 H -0.188 1.188 22 C -0.139 4.139 23 H 0.098 0.902 24 H 0.117 0.883 25 H 0.082 0.918 26 H 0.193 0.807 27 H 0.188 0.812 28 H 0.263 0.737 29 H 0.238 0.762 30 H 0.102 0.898 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.067 15.861 -4.342 17.207 hybrid contribution 0.797 -1.086 0.162 1.357 sum -4.269 14.775 -4.180 15.938 Atomic orbital electron populations 1.20859 0.88373 1.04139 1.03433 1.20259 0.98190 0.91717 0.97626 1.21345 0.92598 0.98898 0.98635 1.21358 0.95455 0.96235 1.01000 1.17805 0.76795 0.93712 1.09118 1.91465 1.29176 1.97336 1.94448 1.18128 0.92672 0.83974 1.05273 1.42934 1.26344 1.08931 1.50762 1.20261 0.85840 0.85013 0.78069 1.90673 1.20962 1.83274 1.46467 1.19197 0.88739 0.85670 0.89404 1.90570 1.22962 1.83785 1.53440 1.41634 1.19084 1.10497 1.42096 1.20049 1.03321 0.89756 1.34301 0.88156 1.26582 0.97102 1.03068 0.93853 1.69541 1.17612 1.34358 1.31057 0.84670 0.77697 0.74942 0.79478 1.18892 1.18857 1.18760 1.21193 0.91175 1.00338 1.01213 0.90232 0.88349 0.91818 0.80655 0.81172 0.73721 0.76236 0.89795 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 10.01 71.24 0.71 -1.06 16 2 C -0.08 -1.70 5.88 -19.88 -0.12 -1.82 16 3 C -0.10 -1.63 9.69 22.29 0.22 -1.42 16 4 C -0.12 -2.40 10.02 22.29 0.22 -2.18 16 5 C 0.05 1.33 7.31 22.50 0.16 1.49 16 6 F -0.15 -4.38 16.96 44.97 0.76 -3.61 16 7 C 0.09 3.14 6.31 38.23 0.24 3.38 16 8 N -0.64 -24.75 5.21 -305.18 -1.59 -26.34 16 9 C 0.52 23.67 7.71 87.05 0.67 24.34 16 10 O -0.54 -25.05 13.88 -3.63 -0.05 -25.10 16 11 C 0.38 20.08 7.81 87.05 0.68 20.76 16 12 O -0.62 -34.41 16.04 -3.74 -0.06 -34.47 16 13 N -0.50 -27.33 5.25 -308.97 -1.62 -28.95 16 14 C -0.34 -19.24 9.68 84.35 0.82 -18.43 16 15 H 0.10 5.77 7.15 -2.91 -0.02 5.75 16 16 C 0.00 -0.03 5.51 85.14 0.47 0.44 16 17 N -0.89 -46.74 13.03 21.77 0.28 -46.46 16 18 Si 1.01 40.04 29.56 68.60 2.03 42.06 16 19 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 21 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 22 C -0.12 -3.67 8.35 22.39 0.19 -3.48 16 23 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 24 H 0.10 0.96 8.09 -2.39 -0.02 0.94 16 25 H 0.06 1.10 8.08 -2.39 -0.02 1.08 16 26 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 27 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 28 H 0.42 15.71 8.12 -92.71 -0.75 14.96 16 29 H 0.40 22.00 7.35 -92.71 -0.68 21.32 16 30 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 31 H 0.13 4.50 6.20 -2.91 -0.02 4.48 16 Total: -1.00 -66.15 287.05 3.79 -62.36 By element: Atomic # 1 Polarization: 38.70 SS G_CDS: -0.23 Total: 38.48 kcal Atomic # 6 Polarization: 17.77 SS G_CDS: 4.26 Total: 22.04 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -2.93 Total: -101.76 kcal Atomic # 8 Polarization: -59.46 SS G_CDS: -0.11 Total: -59.57 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.76 Total: -3.61 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.06 kcal Total: -66.15 3.79 -62.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037244026.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.919 kcal (2) G-P(sol) polarization free energy of solvation -66.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds