Wall clock time and date at job start Mon Mar 30 2020 05:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36004 * 116.99787 * 2 1 4 4 C 1.38690 * 120.04243 * 359.97438 * 3 2 1 5 5 C 1.38209 * 120.08640 * 180.02562 * 4 3 2 6 6 C 1.38247 * 120.17877 * 359.95609 * 5 4 3 7 7 C 1.38643 * 120.09395 * 0.02562 * 6 5 4 8 8 O 1.35994 * 120.05129 * 180.02562 * 7 6 5 9 9 C 1.42896 * 116.99719 * 359.97438 * 8 7 6 10 10 C 1.50710 * 109.47164 * 180.02562 * 9 8 7 11 11 O 1.21434 * 119.99803 * 0.02562 * 10 9 8 12 12 C 1.41026 * 119.99964 * 179.97438 * 10 9 8 13 13 H 1.08004 * 119.99599 * 0.02562 * 12 10 9 14 14 C 1.40455 * 120.00028 * 179.97438 * 12 10 9 15 15 N 1.30526 * 119.99596 * 0.02562 * 14 12 10 16 16 Si 1.86792 * 120.00328 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47218 * 89.99929 * 16 14 12 18 18 H 1.48496 * 109.47573 * 210.00200 * 16 14 12 19 19 H 1.48499 * 109.47065 * 330.00394 * 16 14 12 20 20 C 1.38958 * 120.04501 * 179.73191 * 3 2 1 21 21 O 1.36091 * 120.08739 * 359.96969 * 20 3 2 22 22 C 1.42900 * 117.00006 * 90.00503 * 21 20 3 23 23 H 1.09002 * 109.47382 * 60.00075 * 1 2 3 24 24 H 1.09001 * 109.46938 * 300.00061 * 1 2 3 25 25 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.08003 * 119.95784 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.91156 * 179.97438 * 5 4 3 28 28 H 1.08003 * 119.95577 * 180.02562 * 6 5 4 29 29 H 1.08997 * 109.47517 * 300.00505 * 9 8 7 30 30 H 1.09004 * 109.47132 * 60.00812 * 9 8 7 31 31 H 0.97001 * 119.99784 * 179.97438 * 15 14 12 32 32 H 1.09007 * 109.47156 * 180.02562 * 22 21 20 33 33 H 1.09003 * 109.47141 * 299.99947 * 22 21 20 34 34 H 1.08997 * 109.47350 * 59.99700 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2919 2.3755 -0.0005 5 6 1.9184 3.6075 -0.0011 6 6 3.2986 3.6852 -0.0002 7 6 4.0602 2.5267 0.0008 8 8 5.4179 2.6042 0.0022 9 6 5.9930 3.9124 0.0021 10 6 7.4959 3.8005 0.0031 11 8 8.0233 2.7066 0.0034 12 6 8.2898 4.9661 0.0027 13 1 7.8206 5.9389 0.0020 14 6 9.6904 4.8618 0.0042 15 7 10.2573 3.6860 0.0055 16 14 10.7420 6.4056 0.0044 17 1 11.0192 6.8156 1.4045 18 1 12.0235 6.1318 -0.6942 19 1 10.0192 7.4969 -0.6970 20 6 3.4340 1.2857 0.0056 21 8 4.1779 0.1461 0.0118 22 6 4.5379 -0.4005 -1.2585 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2133 2.3190 -0.0005 27 1 1.3280 4.5119 -0.0019 28 1 3.7844 4.6498 -0.0002 29 1 5.6697 4.4513 -0.8884 30 1 5.6679 4.4522 0.8915 31 1 11.2246 3.6140 0.0062 32 1 5.1276 -1.3053 -1.1108 33 1 3.6350 -0.6432 -1.8188 34 1 5.1254 0.3298 -1.8150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041265177.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:34 Heat of formation + Delta-G solvation = -122.094562 kcal Electronic energy + Delta-G solvation = -19872.593094 eV Core-core repulsion = 16544.354719 eV Total energy + Delta-G solvation = -3328.238375 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.47901 -38.77623 -37.48745 -36.58333 -35.67875 -32.68520 -30.15562 -29.39739 -28.41797 -27.37035 -26.37365 -25.62814 -22.23273 -21.82296 -19.71232 -18.51098 -17.02987 -16.89625 -16.34663 -16.01012 -15.88666 -15.26742 -15.18409 -14.75395 -14.54542 -14.43291 -13.94653 -13.31124 -12.89368 -12.62651 -12.54115 -11.94360 -11.85398 -11.60280 -11.48938 -11.42166 -11.21870 -10.84875 -10.76564 -10.42648 -10.28471 -10.12515 -9.57230 -8.98871 -8.09346 -7.84352 -7.47338 -6.33325 -5.00871 1.36551 1.57001 3.01790 3.02801 3.10805 3.14119 3.67593 3.89885 4.10698 4.14213 4.23184 4.84767 5.02853 5.04052 5.17360 5.29377 5.30239 5.32006 5.38864 5.66537 5.68110 5.81994 5.90143 6.07173 6.22254 6.31662 6.33212 6.40074 6.54754 6.61415 7.17354 7.23020 7.70518 7.94729 8.08898 8.73188 8.73758 10.26041 10.47092 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.038619 B = 0.004281 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.863677 B = 6539.607917 C = 7180.872014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.143 3.857 4 C -0.249 4.249 5 C -0.045 4.045 6 C -0.240 4.240 7 C 0.161 3.839 8 O -0.271 6.271 9 C 0.014 3.986 10 C 0.365 3.635 11 O -0.519 6.519 12 C -0.533 4.533 13 H 0.073 0.927 14 C 0.082 3.918 15 N -0.737 5.737 16 Si 0.912 3.088 17 H -0.268 1.268 18 H -0.276 1.276 19 H -0.261 1.261 20 C 0.020 3.980 21 O -0.311 6.311 22 C 0.038 3.962 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.098 0.902 26 H 0.129 0.871 27 H 0.127 0.873 28 H 0.136 0.864 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.276 0.724 32 H 0.090 0.910 33 H 0.037 0.963 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.716 -0.967 -1.820 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.097 3.903 4 C -0.268 4.268 5 C -0.064 4.064 6 C -0.259 4.259 7 C 0.112 3.888 8 O -0.182 6.182 9 C -0.062 4.062 10 C 0.257 3.743 11 O -0.405 6.405 12 C -0.564 4.564 13 H 0.091 0.909 14 C -0.142 4.142 15 N -0.365 5.365 16 Si 0.736 3.264 17 H -0.193 1.193 18 H -0.201 1.201 19 H -0.185 1.185 20 C -0.025 4.025 21 O -0.226 6.226 22 C -0.057 4.057 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.116 0.884 26 H 0.147 0.853 27 H 0.145 0.855 28 H 0.154 0.846 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.056 0.944 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.019 -2.108 -1.671 16.243 hybrid contribution -0.077 1.438 -0.224 1.457 sum -16.095 -0.670 -1.895 16.220 Atomic orbital electron populations 1.23058 0.78741 1.03713 1.01277 1.86151 1.20922 1.26330 1.88459 1.18988 0.90624 0.84735 0.95916 1.20921 0.99646 0.91767 1.14468 1.20688 0.93698 0.96916 0.95050 1.21217 0.94557 0.97860 1.12281 1.19400 0.85016 0.92442 0.91905 1.86424 1.14096 1.31975 1.85723 1.23895 1.00259 0.81570 1.00496 1.19406 0.84327 0.90872 0.79702 1.90466 1.73356 1.29441 1.47226 1.20526 0.91588 0.94313 1.49988 0.90919 1.25976 0.98599 0.97032 0.92557 1.69957 1.11395 1.24433 1.30701 0.86288 0.79157 0.81754 0.79224 1.19338 1.20108 1.18536 1.17055 0.86285 0.85170 1.14022 1.86164 1.70064 1.37605 1.28814 1.22936 0.98835 0.98741 0.85142 0.92762 0.92647 0.88370 0.85341 0.85487 0.84613 0.91703 0.91591 0.91331 0.89202 0.94428 0.93325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.44 10.28 -34.35 -0.35 -4.79 16 3 C 0.14 2.30 6.70 -39.15 -0.26 2.04 16 4 C -0.25 -3.29 9.04 -39.43 -0.36 -3.64 16 5 C -0.05 -0.60 10.04 -39.59 -0.40 -1.00 16 6 C -0.24 -3.90 9.04 -39.43 -0.36 -4.25 16 7 C 0.16 3.22 6.70 -39.15 -0.26 2.96 16 8 O -0.27 -6.49 9.45 -47.36 -0.45 -6.94 16 9 C 0.01 0.31 5.09 36.01 0.18 0.50 16 10 C 0.37 10.38 6.98 -33.25 -0.23 10.15 16 11 O -0.52 -17.02 15.02 -14.47 -0.22 -17.24 16 12 C -0.53 -14.53 9.22 -37.69 -0.35 -14.88 16 13 H 0.07 1.78 7.85 -52.48 -0.41 1.36 16 14 C 0.08 2.20 5.50 -17.27 -0.10 2.10 16 15 N -0.74 -21.30 11.72 55.57 0.65 -20.65 16 16 Si 0.91 19.08 29.56 -169.99 -5.03 14.05 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 20 C 0.02 0.39 5.75 -39.03 -0.22 0.17 16 21 O -0.31 -6.40 9.98 -45.29 -0.45 -6.85 16 22 C 0.04 0.65 11.13 101.05 1.13 1.77 16 23 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 24 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 25 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.13 1.27 6.29 -52.48 -0.33 0.94 16 27 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.14 2.03 6.29 -52.48 -0.33 1.70 16 29 H 0.06 1.31 7.66 -51.93 -0.40 0.91 16 30 H 0.07 1.35 7.66 -51.93 -0.40 0.95 16 31 H 0.28 7.12 8.29 -40.82 -0.34 6.78 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 302.34 15.07 4.56 4.56 Total: -1.00 -35.19 302.34 -5.43 -40.62 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -3.91 Total: 0.08 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.23 Total: -2.85 kcal Atomic # 7 Polarization: -21.30 SS G_CDS: 0.65 Total: -20.65 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -1.47 Total: -35.81 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.19 -5.43 -40.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041265177.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.476 kcal (2) G-P(sol) polarization free energy of solvation -35.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds