Wall clock time and date at job start Mon Mar 30 2020 05:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36004 * 116.99787 * 2 1 4 4 C 1.38690 * 120.04243 * 359.97438 * 3 2 1 5 5 C 1.38209 * 120.08640 * 180.02562 * 4 3 2 6 6 C 1.38247 * 120.17877 * 359.95609 * 5 4 3 7 7 C 1.38643 * 120.09395 * 0.02562 * 6 5 4 8 8 O 1.35994 * 120.05129 * 180.02562 * 7 6 5 9 9 C 1.42896 * 116.99719 * 359.97438 * 8 7 6 10 10 C 1.50710 * 109.47164 * 180.02562 * 9 8 7 11 11 O 1.21434 * 119.99803 * 0.02562 * 10 9 8 12 12 C 1.41026 * 119.99964 * 179.97438 * 10 9 8 13 13 H 1.08004 * 119.99599 * 0.02562 * 12 10 9 14 14 C 1.40455 * 120.00028 * 179.97438 * 12 10 9 15 15 N 1.30526 * 119.99596 * 0.02562 * 14 12 10 16 16 Si 1.86792 * 120.00328 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47218 * 89.99929 * 16 14 12 18 18 H 1.48496 * 109.47573 * 210.00200 * 16 14 12 19 19 H 1.48499 * 109.47065 * 330.00394 * 16 14 12 20 20 C 1.38958 * 120.04501 * 179.73191 * 3 2 1 21 21 O 1.36091 * 120.08739 * 359.96969 * 20 3 2 22 22 C 1.42900 * 117.00006 * 90.00503 * 21 20 3 23 23 H 1.09002 * 109.47382 * 60.00075 * 1 2 3 24 24 H 1.09001 * 109.46938 * 300.00061 * 1 2 3 25 25 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.08003 * 119.95784 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.91156 * 179.97438 * 5 4 3 28 28 H 1.08003 * 119.95577 * 180.02562 * 6 5 4 29 29 H 1.08997 * 109.47517 * 300.00505 * 9 8 7 30 30 H 1.09004 * 109.47132 * 60.00812 * 9 8 7 31 31 H 0.97001 * 119.99784 * 179.97438 * 15 14 12 32 32 H 1.09007 * 109.47156 * 180.02562 * 22 21 20 33 33 H 1.09003 * 109.47141 * 299.99947 * 22 21 20 34 34 H 1.08997 * 109.47350 * 59.99700 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2919 2.3755 -0.0005 5 6 1.9184 3.6075 -0.0011 6 6 3.2986 3.6852 -0.0002 7 6 4.0602 2.5267 0.0008 8 8 5.4179 2.6042 0.0022 9 6 5.9930 3.9124 0.0021 10 6 7.4959 3.8005 0.0031 11 8 8.0233 2.7066 0.0034 12 6 8.2898 4.9661 0.0027 13 1 7.8206 5.9389 0.0020 14 6 9.6904 4.8618 0.0042 15 7 10.2573 3.6860 0.0055 16 14 10.7420 6.4056 0.0044 17 1 11.0192 6.8156 1.4045 18 1 12.0235 6.1318 -0.6942 19 1 10.0192 7.4969 -0.6970 20 6 3.4340 1.2857 0.0056 21 8 4.1779 0.1461 0.0118 22 6 4.5379 -0.4005 -1.2585 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2133 2.3190 -0.0005 27 1 1.3280 4.5119 -0.0019 28 1 3.7844 4.6498 -0.0002 29 1 5.6697 4.4513 -0.8884 30 1 5.6679 4.4522 0.8915 31 1 11.2246 3.6140 0.0062 32 1 5.1276 -1.3053 -1.1108 33 1 3.6350 -0.6432 -1.8188 34 1 5.1254 0.3298 -1.8150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041265177.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:33 Heat of formation + Delta-G solvation = -146.271795 kcal Electronic energy + Delta-G solvation = -19873.641497 eV Core-core repulsion = 16544.354719 eV Total energy + Delta-G solvation = -3329.286779 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.74316 -40.17573 -38.99143 -38.38218 -37.11088 -34.79386 -31.47499 -30.74721 -30.15187 -28.36484 -27.89573 -27.24789 -23.52838 -23.13997 -21.56865 -19.83146 -18.59174 -18.31037 -17.92100 -17.44158 -17.28754 -16.96868 -16.60995 -16.07815 -15.71726 -15.62914 -15.54099 -15.07110 -14.45147 -14.23868 -13.83452 -13.32883 -13.26718 -13.12332 -12.90731 -12.76474 -12.66283 -12.36886 -12.19311 -12.04873 -11.90740 -11.60244 -11.00864 -10.98093 -9.62660 -9.30462 -9.16096 -8.37364 -7.19178 0.16069 0.34105 1.36265 1.38943 1.57350 1.88048 2.11583 2.21057 2.46873 2.71182 2.94341 3.26831 3.88439 3.99329 4.06599 4.15848 4.25442 4.36497 4.40434 4.43172 4.44250 4.45485 4.48028 4.52277 4.69851 4.75476 5.13865 5.14641 5.21562 5.38471 5.47414 5.88042 6.08814 6.33363 6.63219 6.65572 6.77275 8.18578 8.44690 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.038619 B = 0.004281 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.863677 B = 6539.607917 C = 7180.872014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.328 6.328 3 C 0.142 3.858 4 C -0.231 4.231 5 C -0.031 4.031 6 C -0.244 4.244 7 C 0.121 3.879 8 O -0.316 6.316 9 C 0.029 3.971 10 C 0.334 3.666 11 O -0.583 6.583 12 C -0.554 4.554 13 H 0.100 0.900 14 C 0.022 3.978 15 N -0.791 5.791 16 Si 1.005 2.995 17 H -0.258 1.258 18 H -0.270 1.270 19 H -0.242 1.242 20 C -0.017 4.017 21 O -0.343 6.343 22 C 0.039 3.961 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.118 0.882 26 H 0.172 0.828 27 H 0.174 0.826 28 H 0.147 0.853 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.284 0.716 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.453 1.612 -1.928 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.242 6.242 3 C 0.095 3.905 4 C -0.249 4.249 5 C -0.049 4.049 6 C -0.263 4.263 7 C 0.074 3.926 8 O -0.229 6.229 9 C -0.047 4.047 10 C 0.231 3.769 11 O -0.475 6.475 12 C -0.584 4.584 13 H 0.118 0.882 14 C -0.197 4.197 15 N -0.419 5.419 16 Si 0.823 3.177 17 H -0.182 1.182 18 H -0.195 1.195 19 H -0.165 1.165 20 C -0.062 4.062 21 O -0.259 6.259 22 C -0.055 4.055 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.137 0.863 26 H 0.190 0.810 27 H 0.192 0.808 28 H 0.164 0.836 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -18.819 0.483 -1.782 18.909 hybrid contribution 0.568 0.543 -0.192 0.809 sum -18.251 1.026 -1.974 18.386 Atomic orbital electron populations 1.23468 0.75707 1.05806 1.02885 1.86129 1.24013 1.25926 1.88130 1.19062 0.89599 0.86417 0.95394 1.21436 1.01576 0.90488 1.11434 1.21215 0.92517 0.98805 0.92345 1.21446 0.95955 0.96836 1.12057 1.19764 0.83556 0.94299 0.95012 1.86323 1.16993 1.32185 1.87359 1.23475 0.96696 0.82080 1.02411 1.20292 0.87405 0.90496 0.78739 1.90416 1.75420 1.31396 1.50226 1.21153 0.92698 0.95210 1.49367 0.88152 1.27376 1.00132 1.01229 0.90946 1.70123 1.12351 1.28008 1.31443 0.84911 0.76675 0.76287 0.79852 1.18207 1.19459 1.16492 1.17550 0.87919 0.84573 1.16171 1.86083 1.70908 1.38575 1.30384 1.22999 0.99667 0.98387 0.84432 0.90852 0.91083 0.86350 0.81038 0.80813 0.83581 0.89420 0.89562 0.90597 0.87840 0.92244 0.95717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -8.99 10.28 -79.64 -0.82 -9.81 16 3 C 0.14 4.35 6.70 22.55 0.15 4.50 16 4 C -0.23 -5.17 9.04 22.37 0.20 -4.97 16 5 C -0.03 -0.70 10.04 22.26 0.22 -0.47 16 6 C -0.24 -7.56 9.04 22.37 0.20 -7.36 16 7 C 0.12 4.96 6.70 22.55 0.15 5.11 16 8 O -0.32 -16.01 9.45 -67.05 -0.63 -16.65 16 9 C 0.03 1.36 5.09 71.24 0.36 1.72 16 10 C 0.33 19.88 6.98 26.37 0.18 20.06 16 11 O -0.58 -40.90 15.02 15.51 0.23 -40.67 16 12 C -0.55 -30.67 9.22 23.49 0.22 -30.45 16 13 H 0.10 4.80 7.85 -2.91 -0.02 4.78 16 14 C 0.02 1.20 5.50 85.43 0.47 1.67 16 15 N -0.79 -47.54 11.72 21.91 0.26 -47.28 16 16 Si 1.01 38.72 29.56 68.60 2.03 40.75 16 17 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 18 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 19 H -0.24 -8.51 7.11 99.48 0.71 -7.80 16 20 C -0.02 -0.69 5.75 22.63 0.13 -0.56 16 21 O -0.34 -14.99 9.98 -70.43 -0.70 -15.70 16 22 C 0.04 1.43 11.13 113.37 1.26 2.69 16 23 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 24 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 25 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.17 2.34 6.29 -2.91 -0.02 2.32 16 27 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 28 H 0.15 4.08 6.29 -2.91 -0.02 4.06 16 29 H 0.09 3.59 7.66 -2.39 -0.02 3.57 16 30 H 0.09 3.57 7.66 -2.38 -0.02 3.56 16 31 H 0.28 15.18 8.29 -92.71 -0.77 14.42 16 32 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -84.29 302.34 6.15 -78.14 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 1.12 Total: 17.93 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 4.67 Total: -6.71 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.26 Total: -47.28 kcal Atomic # 8 Polarization: -80.90 SS G_CDS: -1.92 Total: -82.82 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -84.29 6.15 -78.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041265177.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.129 kcal (2) G-P(sol) polarization free energy of solvation -84.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds