Wall clock time and date at job start Mon Mar 30 2020 05:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86801 * 119.99786 * 2 1 4 4 H 1.48504 * 109.47008 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47461 * 300.00224 * 3 2 1 6 6 H 1.48499 * 109.46853 * 60.00568 * 3 2 1 7 7 C 1.38655 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00545 * 180.02562 * 7 2 1 9 9 O 1.34834 * 119.99684 * 359.97438 * 7 2 1 10 10 C 1.35751 * 117.00114 * 185.07486 * 9 7 2 11 11 C 1.38902 * 120.06478 * 354.41164 * 10 9 7 12 12 C 1.38076 * 119.92998 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.06761 * 0.02562 * 12 11 10 14 14 C 1.38285 * 120.13964 * 0.02562 * 13 12 11 15 15 C 1.38118 * 120.06721 * 359.95502 * 14 13 12 16 16 C 1.50699 * 120.03410 * 179.97438 * 15 14 13 17 17 N 1.46896 * 109.47325 * 260.00127 * 16 15 14 18 18 O 1.46297 * 111.00191 * 180.02562 * 17 16 15 19 19 C 1.42897 * 114.00336 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.47262 * 180.02562 * 19 18 17 21 21 N 1.34777 * 119.99763 * 180.02562 * 20 19 18 22 22 O 1.21279 * 120.00064 * 359.97438 * 20 19 18 23 23 H 0.96997 * 120.00240 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.03981 * 0.25577 * 11 10 9 25 25 H 1.08002 * 119.96899 * 179.97438 * 12 11 10 26 26 H 1.07999 * 119.93464 * 179.97438 * 13 12 11 27 27 H 1.08004 * 119.96434 * 179.97438 * 14 13 12 28 28 H 1.08996 * 109.47218 * 20.00417 * 16 15 14 29 29 H 1.09000 * 109.46686 * 139.99988 * 16 15 14 30 30 H 1.00901 * 110.99680 * 303.95365 * 17 16 15 31 31 H 1.08999 * 109.47109 * 299.99958 * 19 18 17 32 32 H 1.08993 * 109.47194 * 59.99506 * 19 18 17 33 33 H 0.96995 * 120.00327 * 359.97438 * 21 20 19 34 34 H 0.97005 * 120.00125 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8907 2.3965 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1059 11 6 3.4574 -3.4395 0.0917 12 6 4.2025 -4.5968 0.2007 13 6 3.5687 -5.8202 0.3234 14 6 2.1876 -5.8884 0.3368 15 6 1.4367 -4.7342 0.2286 16 6 -0.0683 -4.8095 0.2427 17 7 -0.5758 -4.7262 -1.1333 18 8 -2.0369 -4.7956 -1.1584 19 6 -2.5999 -4.7196 -2.4696 20 6 -4.1019 -4.7997 -2.3767 21 7 -4.8500 -4.7482 -3.4966 22 8 -4.6375 -4.9114 -1.2943 23 1 -0.4850 0.8400 0.0004 24 1 3.9529 -2.4843 0.0000 25 1 5.2813 -4.5470 0.1893 26 1 4.1537 -6.7241 0.4081 27 1 1.6957 -6.8451 0.4324 28 1 -0.3807 -5.7537 0.6887 29 1 -0.4680 -3.9814 0.8281 30 1 -0.2459 -3.8893 -1.5903 31 1 -2.3148 -3.7753 -2.9333 32 1 -2.2282 -5.5475 -3.0732 33 1 -4.4217 -4.6593 -4.3623 34 1 -5.8169 -4.7994 -3.4369 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169149530.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:29 Heat of formation + Delta-G solvation = -38.884987 kcal Electronic energy + Delta-G solvation = -19552.547735 eV Core-core repulsion = 16260.210349 eV Total energy + Delta-G solvation = -3292.337386 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.36595 -39.23607 -36.58573 -36.20886 -33.72713 -33.21172 -32.30716 -29.69479 -28.81695 -27.03537 -25.46288 -23.93507 -21.66138 -20.84812 -20.42970 -18.02666 -17.65266 -17.20120 -16.88567 -16.12259 -15.63718 -14.97133 -14.79621 -14.61497 -14.31585 -13.99837 -13.66114 -13.58160 -13.13540 -12.88244 -12.59579 -12.27050 -11.75503 -11.56330 -11.36934 -10.94910 -10.74182 -10.68212 -10.46708 -10.21135 -9.88159 -9.77544 -9.41562 -8.92174 -8.39219 -8.03560 -7.30335 -6.52122 -4.12160 1.97896 2.31319 2.63350 2.78192 3.07650 3.09810 3.14925 3.87568 3.90184 4.52912 4.92521 5.01145 5.14222 5.34784 5.39447 5.46172 5.54860 5.64850 5.79820 5.94068 6.12792 6.27453 6.36654 6.64822 6.67944 6.82817 6.97627 7.04749 7.19099 7.20805 7.31440 7.33674 7.65037 7.76392 7.92305 8.23693 8.93475 9.59386 10.65022 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.012891 B = 0.006098 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.536053 B = 4590.202703 C = 6479.583895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.041 3.959 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.177 6.177 10 C 0.159 3.841 11 C -0.233 4.233 12 C -0.070 4.070 13 C -0.215 4.215 14 C -0.052 4.052 15 C -0.163 4.163 16 C 0.110 3.890 17 N -0.492 5.492 18 O -0.237 6.237 19 C 0.044 3.956 20 C 0.522 3.478 21 N -0.855 5.855 22 O -0.524 6.524 23 H 0.270 0.730 24 H 0.128 0.872 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.344 0.656 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.402 0.598 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.876 -7.342 -7.272 10.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.080 6.080 10 C 0.105 3.895 11 C -0.252 4.252 12 C -0.088 4.088 13 C -0.234 4.234 14 C -0.071 4.071 15 C -0.166 4.166 16 C -0.018 4.018 17 N -0.164 5.164 18 O -0.242 6.242 19 C -0.037 4.037 20 C 0.305 3.695 21 N -0.422 5.422 22 O -0.398 6.398 23 H 0.080 0.920 24 H 0.146 0.854 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.133 0.867 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.160 0.840 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.230 0.770 34 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.541 -7.883 -6.409 10.276 hybrid contribution 0.326 1.929 -0.361 1.990 sum -1.215 -5.954 -6.770 9.097 Atomic orbital electron populations 1.70038 1.05891 1.27686 1.45789 1.25281 0.95832 0.98805 0.96451 0.85653 0.79153 0.80393 0.78280 1.19090 1.20171 1.20133 1.21362 0.91854 0.80631 1.53120 0.88956 1.83941 1.34350 1.11432 1.78293 1.19224 0.90339 0.87581 0.92397 1.21159 0.93589 0.99113 1.11353 1.20807 0.98554 0.92459 0.97000 1.20609 0.94232 0.97042 1.11476 1.20584 0.93488 0.96205 0.96829 1.18585 0.93090 0.91273 1.13617 1.20627 0.90598 1.02144 0.88451 1.67078 0.87630 1.42819 1.18876 1.90870 1.14142 1.96021 1.23187 1.21977 0.90104 1.02788 0.88880 1.20379 0.89433 0.75508 0.84207 1.43687 1.10754 1.78670 1.09084 1.90778 1.74129 1.47257 1.27681 0.92003 0.85432 0.87416 0.87440 0.86679 0.90146 0.92356 0.84030 0.90236 0.89753 0.77008 0.76556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.48 13.67 55.48 0.76 -23.72 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.03 29.55 -169.99 -5.02 15.01 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 7 C -0.39 -10.54 9.49 30.89 0.29 -10.24 16 8 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 9 O -0.18 -4.74 8.95 0.03 0.00 -4.74 16 10 C 0.16 3.67 6.62 -39.11 -0.26 3.41 16 11 C -0.23 -4.89 9.17 -39.40 -0.36 -5.25 16 12 C -0.07 -1.24 10.04 -39.61 -0.40 -1.64 16 13 C -0.21 -3.62 10.04 -39.53 -0.40 -4.02 16 14 C -0.05 -0.93 9.66 -39.61 -0.38 -1.31 16 15 C -0.16 -3.35 5.41 -104.44 -0.56 -3.91 16 16 C 0.11 2.24 6.02 -4.98 -0.03 2.21 16 17 N -0.49 -9.63 7.32 -11.41 -0.08 -9.71 16 18 O -0.24 -4.68 10.82 -33.83 -0.37 -5.05 16 19 C 0.04 0.64 6.87 36.01 0.25 0.88 16 20 C 0.52 7.58 8.18 -10.99 -0.09 7.49 16 21 N -0.86 -7.51 8.87 31.22 0.28 -7.23 16 22 O -0.52 -10.39 17.34 -14.35 -0.25 -10.63 16 23 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.13 2.67 5.64 -52.49 -0.30 2.38 16 25 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 26 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 27 H 0.12 1.75 8.04 -52.48 -0.42 1.33 16 28 H 0.08 1.49 8.00 -51.93 -0.42 1.07 16 29 H 0.06 1.35 7.86 -51.93 -0.41 0.95 16 30 H 0.34 7.07 8.86 -39.29 -0.35 6.72 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 2.13 8.83 -40.82 -0.36 1.76 16 34 H 0.40 3.04 8.93 -40.82 -0.36 2.68 16 LS Contribution 306.89 15.07 4.62 4.62 Total: -1.00 -33.70 306.89 -5.81 -39.51 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -3.71 Total: 13.32 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -2.04 Total: -11.38 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.95 Total: -40.67 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.61 Total: -20.42 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.70 -5.81 -39.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169149530.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.629 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds