Wall clock time and date at job start Mon Mar 30 2020 05:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86801 * 119.99786 * 2 1 4 4 H 1.48504 * 109.47008 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47461 * 300.00224 * 3 2 1 6 6 H 1.48499 * 109.46853 * 60.00568 * 3 2 1 7 7 C 1.38655 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00545 * 180.02562 * 7 2 1 9 9 O 1.34834 * 119.99684 * 359.97438 * 7 2 1 10 10 C 1.35751 * 117.00114 * 185.07486 * 9 7 2 11 11 C 1.38902 * 120.06478 * 354.41164 * 10 9 7 12 12 C 1.38076 * 119.92998 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.06761 * 0.02562 * 12 11 10 14 14 C 1.38285 * 120.13964 * 0.02562 * 13 12 11 15 15 C 1.38118 * 120.06721 * 359.95502 * 14 13 12 16 16 C 1.50699 * 120.03410 * 179.97438 * 15 14 13 17 17 N 1.46896 * 109.47325 * 260.00127 * 16 15 14 18 18 O 1.46297 * 111.00191 * 180.02562 * 17 16 15 19 19 C 1.42897 * 114.00336 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.47262 * 180.02562 * 19 18 17 21 21 N 1.34777 * 119.99763 * 180.02562 * 20 19 18 22 22 O 1.21279 * 120.00064 * 359.97438 * 20 19 18 23 23 H 0.96997 * 120.00240 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.03981 * 0.25577 * 11 10 9 25 25 H 1.08002 * 119.96899 * 179.97438 * 12 11 10 26 26 H 1.07999 * 119.93464 * 179.97438 * 13 12 11 27 27 H 1.08004 * 119.96434 * 179.97438 * 14 13 12 28 28 H 1.08996 * 109.47218 * 20.00417 * 16 15 14 29 29 H 1.09000 * 109.46686 * 139.99988 * 16 15 14 30 30 H 1.00901 * 110.99680 * 303.95365 * 17 16 15 31 31 H 1.08999 * 109.47109 * 299.99958 * 19 18 17 32 32 H 1.08993 * 109.47194 * 59.99506 * 19 18 17 33 33 H 0.96995 * 120.00327 * 359.97438 * 21 20 19 34 34 H 0.97005 * 120.00125 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8907 2.3965 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1059 11 6 3.4574 -3.4395 0.0917 12 6 4.2025 -4.5968 0.2007 13 6 3.5687 -5.8202 0.3234 14 6 2.1876 -5.8884 0.3368 15 6 1.4367 -4.7342 0.2286 16 6 -0.0683 -4.8095 0.2427 17 7 -0.5758 -4.7262 -1.1333 18 8 -2.0369 -4.7956 -1.1584 19 6 -2.5999 -4.7196 -2.4696 20 6 -4.1019 -4.7997 -2.3767 21 7 -4.8500 -4.7482 -3.4966 22 8 -4.6375 -4.9114 -1.2943 23 1 -0.4850 0.8400 0.0004 24 1 3.9529 -2.4843 0.0000 25 1 5.2813 -4.5470 0.1893 26 1 4.1537 -6.7241 0.4081 27 1 1.6957 -6.8451 0.4324 28 1 -0.3807 -5.7537 0.6887 29 1 -0.4680 -3.9814 0.8281 30 1 -0.2459 -3.8893 -1.5903 31 1 -2.3148 -3.7753 -2.9333 32 1 -2.2282 -5.5475 -3.0732 33 1 -4.4217 -4.6593 -4.3623 34 1 -5.8169 -4.7994 -3.4369 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169149530.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:29 Heat of formation + Delta-G solvation = -65.471808 kcal Electronic energy + Delta-G solvation = -19553.700626 eV Core-core repulsion = 16260.210349 eV Total energy + Delta-G solvation = -3293.490277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.91839 -40.54312 -38.24962 -37.68990 -34.85854 -34.67916 -34.21776 -31.17820 -30.38065 -28.33609 -27.37564 -25.49209 -23.30416 -22.15840 -21.79469 -19.81263 -18.88954 -18.50382 -18.40694 -17.44042 -16.92341 -16.51943 -16.47691 -16.12603 -15.86000 -15.44422 -15.32245 -15.09195 -14.57465 -14.47484 -14.00103 -13.84696 -13.54790 -13.08312 -12.98711 -12.54475 -12.31065 -12.21442 -12.08981 -11.61720 -11.22378 -11.09528 -10.82085 -10.76018 -9.93744 -9.58423 -8.96700 -8.47013 -6.14721 0.46152 0.76109 1.35020 1.42451 1.44684 1.48564 1.52286 2.16175 2.73218 2.88406 3.19987 3.46358 3.84858 3.98258 4.02181 4.18136 4.23827 4.31531 4.37277 4.44549 4.65330 4.66673 4.81724 5.12139 5.17475 5.29606 5.38903 5.66714 5.72123 5.79100 5.81324 5.98479 6.09744 6.25508 6.39508 6.98454 7.26255 7.76579 8.74832 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.012891 B = 0.006098 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.536053 B = 4590.202703 C = 6479.583895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.019 4.019 3 Si 1.014 2.986 4 H -0.251 1.251 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.410 4.410 8 H 0.102 0.898 9 O -0.222 6.222 10 C 0.123 3.877 11 C -0.247 4.247 12 C -0.067 4.067 13 C -0.191 4.191 14 C -0.051 4.051 15 C -0.170 4.170 16 C 0.116 3.884 17 N -0.479 5.479 18 O -0.268 6.268 19 C 0.035 3.965 20 C 0.522 3.478 21 N -0.822 5.822 22 O -0.587 6.587 23 H 0.270 0.730 24 H 0.119 0.881 25 H 0.145 0.855 26 H 0.153 0.847 27 H 0.148 0.852 28 H 0.100 0.900 29 H 0.015 0.985 30 H 0.333 0.667 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.423 0.577 34 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.220 -9.197 -8.369 12.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.217 4.217 3 Si 0.835 3.165 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.486 4.486 8 H 0.119 0.881 9 O -0.128 6.128 10 C 0.072 3.928 11 C -0.266 4.266 12 C -0.085 4.085 13 C -0.209 4.209 14 C -0.069 4.069 15 C -0.173 4.173 16 C -0.013 4.013 17 N -0.149 5.149 18 O -0.274 6.274 19 C -0.045 4.045 20 C 0.305 3.695 21 N -0.389 5.389 22 O -0.466 6.466 23 H 0.079 0.921 24 H 0.137 0.863 25 H 0.163 0.837 26 H 0.170 0.830 27 H 0.166 0.834 28 H 0.118 0.882 29 H 0.033 0.967 30 H 0.148 0.852 31 H 0.110 0.890 32 H 0.136 0.864 33 H 0.255 0.745 34 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 0.584 -9.791 -7.581 12.397 hybrid contribution -0.250 2.177 -0.089 2.193 sum 0.334 -7.614 -7.670 10.812 Atomic orbital electron populations 1.70193 1.07895 1.28508 1.48909 1.26476 0.96713 1.02510 0.96002 0.84576 0.78390 0.75254 0.78328 1.17391 1.19423 1.19930 1.21819 0.92488 0.81373 1.52904 0.88089 1.83930 1.35573 1.12276 1.81058 1.19748 0.91558 0.87522 0.93955 1.21303 0.92977 1.00343 1.12021 1.21240 1.00379 0.91543 0.95315 1.21179 0.94036 0.98255 1.07434 1.21017 0.94192 0.96347 0.95392 1.18837 0.93198 0.91579 1.13653 1.20584 0.90986 1.01241 0.88491 1.67060 0.88171 1.41744 1.17962 1.90838 1.13776 1.96222 1.26606 1.22320 0.90122 1.04802 0.87257 1.20455 0.89568 0.74962 0.84493 1.43396 1.11101 1.75881 1.08547 1.90756 1.74990 1.50732 1.30158 0.92102 0.86294 0.83697 0.82951 0.83386 0.88167 0.96685 0.85196 0.89001 0.86431 0.74532 0.75309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.31 13.67 21.61 0.30 -55.01 16 2 C -0.02 -1.06 5.49 84.83 0.47 -0.60 16 3 Si 1.01 42.18 29.55 68.60 2.03 44.20 16 4 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.41 -22.95 9.49 67.92 0.64 -22.31 16 8 H 0.10 5.22 5.20 -2.91 -0.02 5.20 16 9 O -0.22 -12.61 8.95 -22.80 -0.20 -12.82 16 10 C 0.12 5.83 6.62 22.58 0.15 5.98 16 11 C -0.25 -10.24 9.17 22.39 0.21 -10.03 16 12 C -0.07 -2.13 10.04 22.25 0.22 -1.91 16 13 C -0.19 -5.48 10.04 22.30 0.22 -5.26 16 14 C -0.05 -1.64 9.66 22.25 0.22 -1.42 16 15 C -0.17 -6.96 5.41 -19.75 -0.11 -7.07 16 16 C 0.12 4.86 6.02 85.56 0.51 5.37 16 17 N -0.48 -19.22 7.32 -190.02 -1.39 -20.61 16 18 O -0.27 -10.89 10.82 -31.12 -0.34 -11.22 16 19 C 0.04 1.02 6.87 71.24 0.49 1.50 16 20 C 0.52 15.04 8.18 87.66 0.72 15.75 16 21 N -0.82 -13.05 8.87 -173.53 -1.54 -14.59 16 22 O -0.59 -23.93 17.34 16.01 0.28 -23.65 16 23 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 24 H 0.12 5.03 5.64 -2.91 -0.02 5.01 16 25 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 26 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 27 H 0.15 3.80 8.04 -2.91 -0.02 3.78 16 28 H 0.10 3.70 8.00 -2.39 -0.02 3.68 16 29 H 0.01 0.74 7.86 -2.39 -0.02 0.73 16 30 H 0.33 14.41 8.86 -89.69 -0.79 13.61 16 31 H 0.09 2.39 8.14 -2.39 -0.02 2.38 16 32 H 0.12 2.54 8.14 -2.39 -0.02 2.53 16 33 H 0.42 3.38 8.83 -92.71 -0.82 2.56 16 34 H 0.41 5.54 8.93 -92.70 -0.83 4.71 16 Total: -1.00 -79.49 306.89 1.60 -77.89 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: -1.27 Total: 35.82 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 3.74 Total: -19.99 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -2.63 Total: -90.22 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: -0.26 Total: -47.69 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -79.49 1.60 -77.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169149530.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.416 kcal (2) G-P(sol) polarization free energy of solvation -79.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds