Wall clock time and date at job start Mon Mar 30 2020 04:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38165 * 120.02022 * 2 1 4 4 C 1.38254 * 120.11345 * 179.97438 * 3 2 1 5 5 C 1.38321 * 120.17303 * 0.25091 * 4 3 2 6 6 C 1.38257 * 120.04587 * 359.49167 * 5 4 3 7 7 F 1.35107 * 120.05903 * 180.22733 * 6 5 4 8 8 C 1.38828 * 120.02727 * 179.97438 * 2 1 3 9 9 N 1.39832 * 120.08325 * 0.04230 * 8 2 1 10 10 C 1.34773 * 119.99907 * 264.32121 * 9 8 2 11 11 O 1.21470 * 120.00221 * 4.98185 * 10 9 8 12 12 C 1.48733 * 119.99793 * 184.97756 * 10 9 8 13 13 O 1.21516 * 119.99817 * 0.02562 * 12 10 9 14 14 N 1.34775 * 120.00199 * 180.02562 * 12 10 9 15 15 C 1.36124 * 120.00179 * 180.02562 * 14 12 10 16 16 H 1.07991 * 119.99789 * 359.97438 * 15 14 12 17 17 C 1.39582 * 119.99645 * 179.97438 * 15 14 12 18 18 N 1.31013 * 120.00489 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99531 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46925 * 90.00372 * 19 17 15 21 21 H 1.48500 * 109.47186 * 209.99788 * 19 17 15 22 22 H 1.48496 * 109.47345 * 330.00057 * 19 17 15 23 23 H 1.08994 * 109.46749 * 90.00385 * 1 2 3 24 24 H 1.09003 * 109.46901 * 210.00143 * 1 2 3 25 25 H 1.09000 * 109.47455 * 329.99819 * 1 2 3 26 26 H 1.07994 * 119.94617 * 359.95461 * 3 2 1 27 27 H 1.07999 * 119.91758 * 179.97438 * 4 3 2 28 28 H 1.07997 * 119.97639 * 179.74501 * 5 4 3 29 29 H 0.97003 * 119.99590 * 84.32964 * 9 8 2 30 30 H 0.97000 * 119.99597 * 359.97438 * 14 12 10 31 31 H 0.96995 * 119.99991 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5809 1.1985 0.0005 5 6 4.2780 0.0039 -0.0042 6 6 3.5933 -1.1972 0.0012 7 9 4.2740 -2.3643 0.0013 8 6 2.2018 -1.2020 0.0005 9 7 1.5050 -2.4143 0.0002 10 6 1.2686 -3.0560 1.1615 11 8 1.5801 -2.5388 2.2156 12 6 0.6261 -4.3973 1.1526 13 8 0.3148 -4.9149 0.0981 14 7 0.3892 -5.0389 2.3139 15 6 -0.1983 -6.2668 2.3057 16 1 -0.4749 -6.7267 1.3685 17 6 -0.4432 -6.9313 3.5085 18 7 -0.1080 -6.3732 4.6454 19 14 -1.2500 -8.6160 3.4971 20 1 -0.2027 -9.6659 3.4175 21 1 -2.0376 -8.7961 4.7432 22 1 -2.1511 -8.7255 2.3219 23 1 -0.3632 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5139 26 1 1.6578 2.1312 -0.0007 27 1 4.1180 2.1355 0.0001 28 1 5.3580 0.0094 -0.0079 29 1 1.1919 -2.7934 -0.8360 30 1 0.6380 -4.6259 3.1556 31 1 -0.2785 -6.8349 5.4812 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225032975.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:50 Heat of formation + Delta-G solvation = -91.451584 kcal Electronic energy + Delta-G solvation = -19549.824034 eV Core-core repulsion = 16131.746884 eV Total energy + Delta-G solvation = -3418.077150 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.085 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.76836 -40.19896 -38.75795 -37.13866 -34.84222 -34.01230 -32.42236 -31.45491 -29.55989 -27.13915 -25.91205 -23.73776 -22.02444 -21.48911 -19.66958 -18.43614 -17.79766 -17.05116 -16.63535 -16.43509 -15.63023 -15.32179 -14.81333 -14.59973 -14.45021 -13.94171 -13.77163 -13.52062 -13.30690 -12.89256 -12.59591 -12.24535 -11.85546 -11.80074 -11.78722 -11.37300 -11.21960 -10.60595 -10.48446 -10.41285 -9.75867 -9.21599 -8.86513 -8.68229 -8.31277 -8.27390 -6.71582 -4.03548 1.03357 1.11256 2.32228 3.11369 3.13105 3.18310 3.27748 3.50054 4.01987 4.16402 4.22874 4.66585 4.74654 4.91029 5.09454 5.12667 5.19168 5.46526 5.50430 5.60629 5.84476 5.96495 5.98078 6.13140 6.20923 6.35898 6.56475 7.00408 7.26812 7.54488 7.76696 8.25817 8.53402 8.90587 9.25584 9.79122 10.43025 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.036123 B = 0.004522 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.940627 B = 6189.856128 C = 6374.971285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.049 4.049 3 C -0.128 4.128 4 C -0.087 4.087 5 C -0.158 4.158 6 C 0.111 3.889 7 F -0.130 7.130 8 C 0.110 3.890 9 N -0.670 5.670 10 C 0.519 3.481 11 O -0.531 6.531 12 C 0.394 3.606 13 O -0.595 6.595 14 N -0.495 5.495 15 C -0.305 4.305 16 H 0.114 0.886 17 C 0.032 3.968 18 N -0.866 5.866 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.264 1.264 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.137 0.863 29 H 0.420 0.580 30 H 0.405 0.595 31 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.139 13.616 -7.598 16.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.051 4.051 3 C -0.147 4.147 4 C -0.105 4.105 5 C -0.178 4.178 6 C 0.090 3.910 7 F -0.109 7.109 8 C 0.017 3.983 9 N -0.324 5.324 10 C 0.305 3.695 11 O -0.406 6.406 12 C 0.178 3.822 13 O -0.484 6.484 14 N -0.129 5.129 15 C -0.436 4.436 16 H 0.132 0.868 17 C -0.176 4.176 18 N -0.504 5.504 19 Si 0.766 3.234 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.188 1.188 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.150 0.850 27 H 0.151 0.849 28 H 0.155 0.845 29 H 0.259 0.741 30 H 0.240 0.760 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.161 13.503 -7.279 15.895 hybrid contribution -0.053 -0.909 0.248 0.943 sum 4.108 12.595 -7.031 14.998 Atomic orbital electron populations 1.20781 0.90043 1.03695 1.02713 1.20087 0.96941 0.91432 0.96643 1.20980 0.94127 0.97304 1.02305 1.20995 0.94079 0.97404 0.98059 1.21040 1.00856 0.90863 1.05017 1.18077 0.89265 0.81965 1.01719 1.91525 1.79519 1.46324 1.93507 1.17411 0.88687 0.86837 1.05404 1.42947 1.57894 1.20605 1.10957 1.20917 0.78610 0.87052 0.82950 1.90722 1.51296 1.67928 1.30618 1.18710 0.90817 0.86897 0.85764 1.90593 1.59188 1.68415 1.30219 1.41565 1.47418 1.16391 1.07494 1.19915 1.35260 0.93141 0.95244 0.86819 1.25615 0.96870 1.00747 0.94322 1.69483 1.43382 1.39165 0.98333 0.85698 0.79176 0.80288 0.78274 1.19818 1.20459 1.18818 0.90524 0.90835 0.90962 0.85034 0.84881 0.84521 0.74081 0.75964 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 9.77 36.01 0.35 -1.04 16 2 C -0.05 -0.67 5.90 -104.43 -0.62 -1.28 16 3 C -0.13 -1.37 9.69 -39.60 -0.38 -1.75 16 4 C -0.09 -0.87 10.04 -39.54 -0.40 -1.27 16 5 C -0.16 -1.92 10.02 -39.54 -0.40 -2.31 16 6 C 0.11 1.75 7.31 -39.23 -0.29 1.46 16 7 F -0.13 -2.32 17.08 2.25 0.04 -2.28 16 8 C 0.11 1.79 5.27 -83.65 -0.44 1.35 16 9 N -0.67 -12.31 4.09 -10.42 -0.04 -12.36 16 10 C 0.52 11.65 7.52 -11.92 -0.09 11.56 16 11 O -0.53 -12.92 16.45 5.39 0.09 -12.84 16 12 C 0.39 10.03 7.81 -11.92 -0.09 9.94 16 13 O -0.60 -15.99 16.04 5.35 0.09 -15.91 16 14 N -0.49 -13.31 5.25 -11.62 -0.06 -13.37 16 15 C -0.31 -8.39 9.67 -15.15 -0.15 -8.53 16 16 H 0.11 3.18 7.15 -52.49 -0.38 2.80 16 17 C 0.03 0.82 5.51 -17.40 -0.10 0.73 16 18 N -0.87 -23.12 13.03 55.53 0.72 -22.40 16 19 Si 0.94 19.95 29.56 -169.99 -5.02 14.92 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 1.08 7.20 -51.93 -0.37 0.71 16 25 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 26 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 27 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.42 7.13 8.29 -40.82 -0.34 6.79 16 30 H 0.40 10.99 7.35 -40.82 -0.30 10.69 16 31 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 LS Contribution 290.00 15.07 4.37 4.37 Total: -1.00 -31.56 290.00 -5.05 -36.61 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -2.63 Total: 14.40 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -2.59 Total: 8.85 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.62 Total: -48.13 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: 0.17 Total: -28.74 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.56 -5.05 -36.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225032975.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.842 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds