Wall clock time and date at job start Mon Mar 30 2020 04:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38165 * 120.02022 * 2 1 4 4 C 1.38254 * 120.11345 * 179.97438 * 3 2 1 5 5 C 1.38321 * 120.17303 * 0.25091 * 4 3 2 6 6 C 1.38257 * 120.04587 * 359.49167 * 5 4 3 7 7 F 1.35107 * 120.05903 * 180.22733 * 6 5 4 8 8 C 1.38828 * 120.02727 * 179.97438 * 2 1 3 9 9 N 1.39832 * 120.08325 * 0.04230 * 8 2 1 10 10 C 1.34773 * 119.99907 * 264.32121 * 9 8 2 11 11 O 1.21470 * 120.00221 * 4.98185 * 10 9 8 12 12 C 1.48733 * 119.99793 * 184.97756 * 10 9 8 13 13 O 1.21516 * 119.99817 * 0.02562 * 12 10 9 14 14 N 1.34775 * 120.00199 * 180.02562 * 12 10 9 15 15 C 1.36124 * 120.00179 * 180.02562 * 14 12 10 16 16 H 1.07991 * 119.99789 * 359.97438 * 15 14 12 17 17 C 1.39582 * 119.99645 * 179.97438 * 15 14 12 18 18 N 1.31013 * 120.00489 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99531 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46925 * 90.00372 * 19 17 15 21 21 H 1.48500 * 109.47186 * 209.99788 * 19 17 15 22 22 H 1.48496 * 109.47345 * 330.00057 * 19 17 15 23 23 H 1.08994 * 109.46749 * 90.00385 * 1 2 3 24 24 H 1.09003 * 109.46901 * 210.00143 * 1 2 3 25 25 H 1.09000 * 109.47455 * 329.99819 * 1 2 3 26 26 H 1.07994 * 119.94617 * 359.95461 * 3 2 1 27 27 H 1.07999 * 119.91758 * 179.97438 * 4 3 2 28 28 H 1.07997 * 119.97639 * 179.74501 * 5 4 3 29 29 H 0.97003 * 119.99590 * 84.32964 * 9 8 2 30 30 H 0.97000 * 119.99597 * 359.97438 * 14 12 10 31 31 H 0.96995 * 119.99991 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5809 1.1985 0.0005 5 6 4.2780 0.0039 -0.0042 6 6 3.5933 -1.1972 0.0012 7 9 4.2740 -2.3643 0.0013 8 6 2.2018 -1.2020 0.0005 9 7 1.5050 -2.4143 0.0002 10 6 1.2686 -3.0560 1.1615 11 8 1.5801 -2.5388 2.2156 12 6 0.6261 -4.3973 1.1526 13 8 0.3148 -4.9149 0.0981 14 7 0.3892 -5.0389 2.3139 15 6 -0.1983 -6.2668 2.3057 16 1 -0.4749 -6.7267 1.3685 17 6 -0.4432 -6.9313 3.5085 18 7 -0.1080 -6.3732 4.6454 19 14 -1.2500 -8.6160 3.4971 20 1 -0.2027 -9.6659 3.4175 21 1 -2.0376 -8.7961 4.7432 22 1 -2.1511 -8.7255 2.3219 23 1 -0.3632 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5139 26 1 1.6578 2.1312 -0.0007 27 1 4.1180 2.1355 0.0001 28 1 5.3580 0.0094 -0.0079 29 1 1.1919 -2.7934 -0.8360 30 1 0.6380 -4.6259 3.1556 31 1 -0.2785 -6.8349 5.4812 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225032975.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:49 Heat of formation + Delta-G solvation = -113.661128 kcal Electronic energy + Delta-G solvation = -19550.787112 eV Core-core repulsion = 16131.746884 eV Total energy + Delta-G solvation = -3419.040228 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.085 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.01398 -41.75251 -40.20681 -38.96192 -36.61749 -35.73313 -33.56872 -33.39202 -30.72645 -28.29167 -27.72541 -25.38453 -23.23197 -22.62687 -21.41706 -20.48969 -19.36578 -18.41734 -17.92045 -17.74483 -17.38577 -16.73369 -16.49392 -16.39637 -15.76953 -15.61421 -14.95475 -14.85705 -14.55647 -14.39444 -14.28480 -13.71267 -13.19994 -13.00014 -12.81517 -12.74135 -12.64252 -12.48108 -12.30287 -12.11035 -11.71069 -10.69920 -10.43092 -10.33401 -9.82088 -9.67476 -8.70951 -6.16087 -0.00870 0.14205 0.45084 1.39364 1.45161 1.54203 1.70343 2.25572 2.26989 2.51717 3.07757 3.09377 3.20243 3.71735 3.91520 3.92495 4.22215 4.27900 4.41691 4.55643 4.71546 4.90167 5.07584 5.17646 5.20747 5.28187 5.31589 5.43903 5.60447 5.87302 5.98481 6.26632 6.72590 6.91050 7.18956 7.71597 8.44781 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.036123 B = 0.004522 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.940627 B = 6189.856128 C = 6374.971285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.059 4.059 3 C -0.117 4.117 4 C -0.069 4.069 5 C -0.155 4.155 6 C 0.074 3.926 7 F -0.154 7.154 8 C 0.066 3.934 9 N -0.650 5.650 10 C 0.526 3.474 11 O -0.555 6.555 12 C 0.388 3.612 13 O -0.614 6.614 14 N -0.505 5.505 15 C -0.345 4.345 16 H 0.101 0.899 17 C -0.003 4.003 18 N -0.893 5.893 19 Si 1.013 2.987 20 H -0.265 1.265 21 H -0.265 1.265 22 H -0.262 1.262 23 H 0.095 0.905 24 H 0.037 0.963 25 H 0.097 0.903 26 H 0.172 0.828 27 H 0.180 0.820 28 H 0.160 0.840 29 H 0.423 0.577 30 H 0.401 0.599 31 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.323 15.697 -7.923 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.061 4.061 3 C -0.135 4.135 4 C -0.087 4.087 5 C -0.174 4.174 6 C 0.053 3.947 7 F -0.132 7.132 8 C -0.026 4.026 9 N -0.301 5.301 10 C 0.311 3.689 11 O -0.432 6.432 12 C 0.173 3.827 13 O -0.504 6.504 14 N -0.138 5.138 15 C -0.475 4.475 16 H 0.119 0.881 17 C -0.208 4.208 18 N -0.530 5.530 19 Si 0.833 3.167 20 H -0.190 1.190 21 H -0.189 1.189 22 H -0.186 1.186 23 H 0.114 0.886 24 H 0.056 0.944 25 H 0.116 0.884 26 H 0.189 0.811 27 H 0.198 0.802 28 H 0.178 0.822 29 H 0.263 0.737 30 H 0.235 0.765 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.360 15.618 -7.631 17.921 hybrid contribution -0.050 -1.364 0.286 1.395 sum 4.310 14.253 -7.344 16.604 Atomic orbital electron populations 1.20819 0.89407 1.03116 1.03788 1.20352 0.97644 0.91421 0.96646 1.21475 0.94716 0.97492 0.99831 1.21575 0.94024 0.98251 0.94829 1.21426 1.02188 0.90102 1.03717 1.18546 0.89344 0.82600 1.04162 1.91458 1.79895 1.47859 1.94017 1.17801 0.89178 0.86519 1.09060 1.42701 1.56640 1.21209 1.09579 1.20304 0.78528 0.86085 0.83962 1.90692 1.52649 1.68239 1.31587 1.19287 0.90237 0.87995 0.85185 1.90553 1.59839 1.69364 1.30691 1.41658 1.47870 1.16645 1.07630 1.20043 1.37698 0.94110 0.95661 0.88093 1.26601 0.96460 1.04425 0.93280 1.69548 1.43528 1.40839 0.99077 0.84659 0.78287 0.75000 0.78747 1.18957 1.18888 1.18603 0.88632 0.94412 0.88450 0.81057 0.80233 0.82230 0.73723 0.76478 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.60 9.77 71.24 0.70 -1.90 16 2 C -0.06 -1.49 5.90 -19.74 -0.12 -1.61 16 3 C -0.12 -1.99 9.69 22.26 0.22 -1.78 16 4 C -0.07 -1.06 10.04 22.29 0.22 -0.84 16 5 C -0.16 -3.36 10.02 22.29 0.22 -3.14 16 6 C 0.07 2.33 7.31 22.49 0.16 2.50 16 7 F -0.15 -5.68 17.08 44.97 0.77 -4.91 16 8 C 0.07 2.17 5.27 38.23 0.20 2.37 16 9 N -0.65 -24.82 4.09 -305.18 -1.25 -26.07 16 10 C 0.53 24.73 7.52 87.05 0.65 25.39 16 11 O -0.55 -28.08 16.45 -3.62 -0.06 -28.14 16 12 C 0.39 20.73 7.81 87.05 0.68 21.41 16 13 O -0.61 -34.45 16.04 -3.77 -0.06 -34.51 16 14 N -0.50 -28.45 5.25 -308.96 -1.62 -30.07 16 15 C -0.35 -19.69 9.67 84.35 0.82 -18.87 16 16 H 0.10 5.89 7.15 -2.92 -0.02 5.87 16 17 C 0.00 -0.15 5.51 85.14 0.47 0.32 16 18 N -0.89 -48.25 13.03 21.76 0.28 -47.96 16 19 Si 1.01 40.79 29.56 68.60 2.03 42.82 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 21 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 22 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 23 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.04 1.12 7.20 -2.39 -0.02 1.11 16 25 H 0.10 1.67 8.09 -2.39 -0.02 1.66 16 26 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 27 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 28 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 29 H 0.42 15.09 8.29 -92.71 -0.77 14.32 16 30 H 0.40 22.84 7.35 -92.71 -0.68 22.16 16 31 H 0.29 14.32 8.30 -92.71 -0.77 13.55 16 Total: -1.00 -71.90 290.00 4.07 -67.83 By element: Atomic # 1 Polarization: 37.41 SS G_CDS: -0.25 Total: 37.16 kcal Atomic # 6 Polarization: 19.63 SS G_CDS: 4.23 Total: 23.86 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -2.59 Total: -104.10 kcal Atomic # 8 Polarization: -62.54 SS G_CDS: -0.12 Total: -62.66 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.77 Total: -4.91 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -71.90 4.07 -67.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225032975.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.829 kcal (2) G-P(sol) polarization free energy of solvation -71.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds