Wall clock time and date at job start Mon Mar 30 2020 05:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38387 * 120.00165 * 2 1 4 4 N 1.32118 * 120.00091 * 179.97438 * 3 2 1 5 5 C 1.32154 * 119.99692 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99920 * 179.72668 * 5 4 3 7 7 N 1.46501 * 109.47318 * 275.00357 * 6 5 4 8 8 C 1.34777 * 120.00154 * 179.97438 * 7 6 5 9 9 S 1.71199 * 119.99898 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99965 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99693 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.46428 * 180.02562 * 11 10 8 13 13 H 1.08001 * 120.00646 * 359.97438 * 12 11 10 14 14 C 1.37886 * 119.99484 * 180.02562 * 12 11 10 15 15 N 1.31506 * 120.00156 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99736 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47053 * 59.99510 * 16 14 12 18 18 H 1.48503 * 109.47010 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46920 * 299.99564 * 16 14 12 20 20 C 1.38342 * 120.00353 * 0.02562 * 5 4 3 21 21 N 1.32124 * 120.00069 * 179.97438 * 2 1 3 22 22 H 1.09003 * 109.46587 * 90.00880 * 1 2 3 23 23 H 1.08998 * 109.47245 * 210.00431 * 1 2 3 24 24 H 1.08997 * 109.47657 * 330.01020 * 1 2 3 25 25 H 1.08001 * 119.99856 * 359.97438 * 3 2 1 26 26 H 1.08999 * 109.47209 * 35.00003 * 6 5 4 27 27 H 1.08994 * 109.47427 * 155.00146 * 6 5 4 28 28 H 0.97003 * 119.99780 * 359.97438 * 7 6 5 29 29 H 0.96996 * 119.99589 * 0.02562 * 10 8 7 30 30 H 1.08997 * 109.47301 * 299.99982 * 11 10 8 31 31 H 1.08998 * 109.47252 * 60.00779 * 11 10 8 32 32 H 0.97002 * 120.00294 * 180.02562 * 15 14 12 33 33 H 1.08001 * 119.99992 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5202 1.1984 0.0005 5 6 4.1809 0.0539 0.0015 6 6 5.6879 0.0538 -0.0041 7 7 6.1711 0.1700 -1.3822 8 6 7.4953 0.1912 -1.6325 9 16 8.6126 0.0816 -0.3401 10 7 7.9398 0.2976 -2.9005 11 6 9.3792 0.3201 -3.1725 12 6 9.6078 0.4454 -4.6568 13 1 8.7653 0.5021 -5.3301 14 6 10.8927 0.4864 -5.1553 15 7 11.9186 0.4168 -4.3355 16 14 11.1761 0.6425 -6.9951 17 1 10.5604 1.9016 -7.4858 18 1 12.6351 0.6651 -7.2710 19 1 10.5582 -0.5147 -7.6910 20 6 3.4891 -1.1442 0.0015 21 7 2.1677 -1.1442 0.0005 22 1 -0.3632 -0.0002 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3634 0.8900 0.5136 25 1 1.6590 2.1338 -0.0004 26 1 6.0535 0.8974 0.5814 27 1 6.0528 -0.8762 0.4316 28 1 5.5380 0.2318 -2.1146 29 1 7.3067 0.3593 -3.6327 30 1 9.8321 1.1702 -2.6625 31 1 9.8316 -0.6036 -2.8116 32 1 12.8225 0.4461 -4.6861 33 1 4.0291 -2.0795 0.0020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000243499674.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:43 Heat of formation + Delta-G solvation = 55.609733 kcal Electronic energy + Delta-G solvation = -16665.783430 eV Core-core repulsion = 13852.589264 eV Total energy + Delta-G solvation = -2813.194166 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.56482 -38.36606 -35.74850 -34.51044 -33.31732 -32.51102 -29.71052 -27.43899 -25.48708 -25.05249 -23.16333 -22.75027 -22.14331 -18.45297 -18.17404 -17.14006 -16.33523 -16.18961 -15.70554 -15.41341 -14.75607 -14.64942 -14.54028 -13.64002 -13.43662 -13.18827 -13.09341 -12.90218 -12.62705 -12.16832 -11.91291 -11.47986 -11.22907 -11.04585 -10.76680 -10.48305 -10.34645 -9.60296 -9.52275 -9.42512 -8.87844 -8.26890 -7.19491 -6.74315 -6.22816 -4.33321 0.28220 0.74222 2.09232 2.58981 3.04042 3.20475 3.25749 3.27142 3.42923 3.62532 3.77927 4.05009 4.17268 4.30822 4.37085 4.67434 4.69906 5.03271 5.08151 5.12292 5.20784 5.43998 5.53409 5.68230 5.98393 6.35322 6.63798 6.90411 7.31060 7.39511 7.40142 7.41250 7.63802 7.85160 8.20991 8.70994 9.32154 10.85732 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.031721 B = 0.003472 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.491373 B = 8063.271740 C = 8655.312999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.082 3.918 3 C 0.051 3.949 4 N -0.417 5.417 5 C 0.050 3.950 6 C 0.190 3.810 7 N -0.700 5.700 8 C 0.557 3.443 9 S -0.667 6.667 10 N -0.651 5.651 11 C 0.252 3.748 12 C -0.558 4.558 13 H 0.061 0.939 14 C 0.070 3.930 15 N -0.875 5.875 16 Si 0.905 3.095 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.275 1.275 20 C 0.078 3.922 21 N -0.440 5.440 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.171 0.829 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.391 0.609 29 H 0.389 0.611 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.269 0.731 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.847 -0.627 6.064 23.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.059 4.059 3 C -0.110 4.110 4 N -0.131 5.131 5 C -0.090 4.090 6 C 0.065 3.935 7 N -0.334 5.334 8 C 0.194 3.806 9 S -0.543 6.543 10 N -0.273 5.273 11 C 0.132 3.868 12 C -0.597 4.597 13 H 0.079 0.921 14 C -0.135 4.135 15 N -0.511 5.511 16 Si 0.732 3.268 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.201 1.201 20 C -0.082 4.082 21 N -0.155 5.155 22 H 0.102 0.898 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.188 0.812 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.226 0.774 29 H 0.224 0.776 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -21.697 -0.703 6.969 22.800 hybrid contribution -0.940 0.246 -2.340 2.534 sum -22.637 -0.458 4.628 23.110 Atomic orbital electron populations 1.20715 0.87523 1.04111 1.03653 1.22447 0.98685 0.89781 0.95014 1.23686 0.90492 0.99355 0.97471 1.68325 1.08696 1.29352 1.06749 1.22346 0.97828 0.89914 0.98918 1.20198 0.84465 1.06048 0.82813 1.44662 1.03966 1.75622 1.09183 1.22125 0.86155 0.81531 0.90780 1.93251 1.52013 1.75330 1.33683 1.46000 1.13150 1.64982 1.03163 1.19658 0.70640 1.00227 0.96299 1.21110 0.92900 1.54650 0.90996 0.92129 1.24895 0.95564 0.94440 0.98647 1.69967 0.98881 1.47366 1.34885 0.86459 0.77454 0.78709 0.84206 1.20064 1.20850 1.20062 1.23753 0.90425 0.99482 0.94587 1.68380 1.08620 1.29279 1.09266 0.89803 0.90010 0.90029 0.81183 0.87882 0.87858 0.77397 0.77628 0.93134 0.93111 0.92110 0.80822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.49 10.19 36.01 0.37 -0.12 16 2 C 0.08 0.68 6.79 -82.41 -0.56 0.12 16 3 C 0.05 0.44 10.88 -17.37 -0.19 0.25 16 4 N -0.42 -4.64 10.42 -9.29 -0.10 -4.74 16 5 C 0.05 0.54 6.15 -82.41 -0.51 0.03 16 6 C 0.19 2.35 5.46 -5.19 -0.03 2.32 16 7 N -0.70 -9.68 5.55 -63.21 -0.35 -10.03 16 8 C 0.56 10.47 7.98 -86.91 -0.69 9.78 16 9 S -0.67 -15.40 27.77 -107.50 -2.99 -18.39 16 10 N -0.65 -12.91 5.55 -63.21 -0.35 -13.26 16 11 C 0.25 6.37 4.88 -5.19 -0.03 6.35 16 12 C -0.56 -14.65 9.28 -34.44 -0.32 -14.97 16 13 H 0.06 1.48 7.60 -52.49 -0.40 1.08 16 14 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 15 N -0.88 -25.27 13.29 55.43 0.74 -24.54 16 16 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 C 0.08 0.75 10.86 -17.38 -0.19 0.57 16 21 N -0.44 -4.44 10.42 -9.29 -0.10 -4.54 16 22 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.08 0.22 8.09 -51.93 -0.42 -0.20 16 25 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 26 H 0.10 1.45 7.99 -51.93 -0.41 1.04 16 27 H 0.10 1.24 7.90 -51.93 -0.41 0.83 16 28 H 0.39 4.53 8.48 -40.82 -0.35 4.19 16 29 H 0.39 6.55 8.33 -40.82 -0.34 6.21 16 30 H 0.05 1.44 7.99 -51.93 -0.42 1.02 16 31 H 0.05 1.43 7.99 -51.93 -0.41 1.02 16 32 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 306.88 15.07 4.62 4.62 Total: -1.00 -33.47 306.88 -9.77 -43.23 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -3.99 Total: 6.11 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -2.24 Total: 6.11 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.16 Total: -57.10 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: -15.40 SS G_CDS: -2.99 Total: -18.39 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.47 -9.77 -43.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243499674.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.844 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds